Wall clock time and date at job start Tue Mar 31 2020 11:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47336 * 2 1 4 4 H 1.09004 * 110.05352 * 305.03710 * 3 2 1 5 5 C 1.54266 * 110.03482 * 66.45433 * 3 2 1 6 6 C 1.54891 * 104.31343 * 142.96208 * 5 3 2 7 7 C 1.54892 * 102.74959 * 321.99283 * 6 5 3 8 8 C 1.54224 * 110.14449 * 183.47947 * 3 2 1 9 9 H 1.09000 * 110.04153 * 121.41916 * 8 3 2 10 10 N 1.46892 * 110.02257 * 0.03906 * 8 3 2 11 11 C 1.46905 * 111.00152 * 156.33915 * 10 8 3 12 12 C 1.50699 * 109.47229 * 179.97438 * 11 10 8 13 13 C 1.38288 * 119.92224 * 269.72861 * 12 11 10 14 14 C 1.38106 * 120.07463 * 179.73011 * 13 12 11 15 15 C 1.38916 * 119.92013 * 0.53846 * 14 13 12 16 16 N 1.39674 * 120.07228 * 179.75063 * 15 14 13 17 17 C 1.46494 * 120.00033 * 179.97438 * 16 15 14 18 18 C 1.46500 * 120.00175 * 359.97438 * 16 15 14 19 19 C 1.50700 * 109.47276 * 89.99773 * 18 16 15 20 20 H 1.07995 * 120.00068 * 359.97438 * 19 18 16 21 21 C 1.37877 * 120.00082 * 180.02562 * 19 18 16 22 22 N 1.31516 * 120.00100 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00271 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46867 * 59.99704 * 23 21 19 25 25 H 1.48494 * 109.47289 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.47193 * 300.00165 * 23 21 19 27 27 C 1.38908 * 119.85442 * 359.72985 * 15 14 13 28 28 C 1.38108 * 119.92129 * 0.02562 * 27 15 14 29 29 H 1.09005 * 109.47075 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46762 * 300.00015 * 1 2 3 31 31 H 1.08993 * 109.47312 * 60.00107 * 1 2 3 32 32 H 1.08999 * 109.47163 * 239.99341 * 2 1 3 33 33 H 1.09002 * 109.47084 * 120.00024 * 2 1 3 34 34 H 1.09002 * 110.48609 * 24.21622 * 5 3 2 35 35 H 1.08998 * 110.48769 * 261.70715 * 5 3 2 36 36 H 1.09000 * 110.75322 * 80.30558 * 6 5 3 37 37 H 1.09002 * 110.75658 * 203.67757 * 6 5 3 38 38 H 1.08993 * 110.48715 * 156.62375 * 7 6 5 39 39 H 1.09001 * 110.48596 * 279.13315 * 7 6 5 40 40 H 1.00902 * 110.99749 * 280.29035 * 10 8 3 41 41 H 1.08998 * 109.46521 * 299.99992 * 11 10 8 42 42 H 1.09001 * 109.47084 * 59.99549 * 11 10 8 43 43 H 1.08004 * 119.96266 * 359.96820 * 13 12 11 44 44 H 1.07993 * 120.04189 * 180.27062 * 14 13 12 45 45 H 1.09011 * 109.46957 * 90.00140 * 17 16 15 46 46 H 1.08998 * 109.47406 * 209.99786 * 17 16 15 47 47 H 1.09000 * 109.47710 * 330.00514 * 17 16 15 48 48 H 1.08997 * 109.47364 * 209.99819 * 18 16 15 49 49 H 1.09004 * 109.46720 * 329.99907 * 18 16 15 50 50 H 0.97001 * 120.00155 * 179.97438 * 22 21 19 51 51 H 1.07995 * 120.04170 * 179.97438 * 27 15 14 52 52 H 1.08003 * 119.95902 * 180.02562 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6104 1.9908 -0.8384 5 6 1.6704 2.1337 1.3286 6 6 2.8897 3.0355 1.6433 7 6 4.0863 2.1631 1.1890 8 6 3.5797 1.4614 -0.0879 9 1 3.8966 2.0173 -0.9702 10 7 4.0970 0.0878 -0.1463 11 6 5.4245 0.0515 -0.7746 12 6 5.9218 -1.3705 -0.8162 13 6 6.6664 -1.8718 0.2358 14 6 7.1191 -3.1762 0.2035 15 6 6.8351 -3.9813 -0.8924 16 7 7.2958 -5.2993 -0.9307 17 6 6.9949 -6.1471 -2.0869 18 6 8.0798 -5.8340 0.1854 19 6 7.1529 -6.4536 1.1992 20 1 6.0863 -6.4491 1.0294 21 6 7.6663 -7.0252 2.3441 22 7 8.9650 -7.0302 2.5511 23 14 6.5172 -7.7926 3.6011 24 1 5.7500 -8.8928 2.9637 25 1 7.3120 -8.3346 4.7323 26 1 5.5760 -6.7609 4.1063 27 6 6.0917 -3.4727 -1.9498 28 6 5.6378 -2.1690 -1.9087 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.5291 1.3943 2.1170 35 1 0.7708 2.7371 1.2073 36 1 2.8452 3.9600 1.0677 37 1 2.9489 3.2464 2.7111 38 1 4.9503 2.7883 0.9636 39 1 4.3368 1.4300 1.9558 40 1 4.1202 -0.3292 0.7722 41 1 5.3567 0.4430 -1.7896 42 1 6.1174 0.6617 -0.1953 43 1 6.8909 -1.2438 1.0853 44 1 7.6968 -3.5685 1.0273 45 1 7.7854 -6.0417 -2.8302 46 1 6.9323 -7.1875 -1.7681 47 1 6.0434 -5.8428 -2.5229 48 1 8.7707 -6.5910 -0.1856 49 1 8.6429 -5.0265 0.6536 50 1 9.3262 -7.4320 3.3567 51 1 5.8695 -4.0958 -2.8035 52 1 5.0594 -1.7731 -2.7304 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000154134460.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:24 Heat of formation + Delta-G solvation = 11.923320 kcal Electronic energy + Delta-G solvation = -26412.497128 eV Core-core repulsion = 22989.646199 eV Total energy + Delta-G solvation = -3422.850930 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.46373 -38.79538 -36.08867 -34.18057 -33.06097 -32.64788 -30.41771 -29.99939 -27.80431 -27.66798 -27.14337 -25.20420 -23.74899 -22.72043 -22.10223 -21.45546 -20.94211 -19.57491 -19.08184 -16.78656 -16.50291 -16.11580 -15.62510 -15.23981 -14.67135 -14.63623 -14.39986 -14.24093 -13.77684 -13.68869 -13.54933 -13.31574 -12.96250 -12.87366 -12.79106 -12.28061 -12.21932 -12.10750 -11.68303 -11.60298 -11.38904 -11.32433 -11.23592 -11.18284 -10.97346 -10.93908 -10.86621 -10.66337 -10.45657 -10.43928 -10.33033 -10.26631 -9.88444 -9.74649 -8.83376 -8.50489 -8.27264 -8.20044 -6.45265 -6.01267 -4.17539 2.13527 2.25424 3.28021 3.32290 3.35843 4.14632 4.22209 4.41391 4.42154 4.49224 4.64069 4.83130 5.06738 5.19833 5.21352 5.23170 5.29928 5.32882 5.37123 5.44606 5.47971 5.49375 5.62292 5.65756 5.69992 5.70475 5.77011 5.83137 5.85030 5.90157 5.95042 6.03237 6.08519 6.09412 6.12078 6.15499 6.30097 6.38963 6.42145 6.45631 6.55525 6.67113 6.95354 7.04166 7.17701 7.23620 7.27638 7.35059 7.51049 7.62968 7.80998 8.15757 8.27901 8.50368 8.91519 9.49285 10.95527 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012898 B = 0.002904 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2170.281948 B = 9639.719964 C =10383.605860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.099 4.099 3 C -0.082 4.082 4 H 0.068 0.932 5 C -0.121 4.121 6 C -0.123 4.123 7 C -0.154 4.154 8 C 0.085 3.915 9 H 0.076 0.924 10 N -0.674 5.674 11 C 0.115 3.885 12 C -0.172 4.172 13 C -0.068 4.068 14 C -0.188 4.188 15 C 0.241 3.759 16 N -0.616 5.616 17 C 0.098 3.902 18 C 0.249 3.751 19 C -0.532 4.532 20 H 0.059 0.941 21 C 0.062 3.938 22 N -0.896 5.896 23 Si 0.896 3.104 24 H -0.277 1.277 25 H -0.286 1.286 26 H -0.275 1.275 27 C -0.223 4.223 28 C -0.051 4.051 29 H 0.050 0.950 30 H 0.048 0.952 31 H 0.047 0.953 32 H 0.077 0.923 33 H 0.059 0.941 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.067 0.933 40 H 0.343 0.657 41 H 0.068 0.932 42 H 0.027 0.973 43 H 0.106 0.894 44 H 0.130 0.870 45 H 0.035 0.965 46 H 0.066 0.934 47 H 0.055 0.945 48 H 0.030 0.970 49 H 0.035 0.965 50 H 0.264 0.736 51 H 0.112 0.888 52 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.068 17.489 -6.166 21.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.137 4.137 3 C -0.101 4.101 4 H 0.086 0.914 5 C -0.159 4.159 6 C -0.161 4.161 7 C -0.193 4.193 8 C -0.025 4.025 9 H 0.094 0.906 10 N -0.304 5.304 11 C -0.013 4.013 12 C -0.175 4.175 13 C -0.087 4.087 14 C -0.210 4.210 15 C 0.134 3.866 16 N -0.322 5.322 17 C -0.046 4.046 18 C 0.130 3.870 19 C -0.571 4.571 20 H 0.077 0.923 21 C -0.141 4.141 22 N -0.535 5.535 23 Si 0.724 3.276 24 H -0.202 1.202 25 H -0.212 1.212 26 H -0.201 1.201 27 C -0.246 4.246 28 C -0.071 4.071 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.095 0.905 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.163 0.837 41 H 0.086 0.914 42 H 0.045 0.955 43 H 0.124 0.876 44 H 0.148 0.852 45 H 0.053 0.947 46 H 0.085 0.915 47 H 0.073 0.927 48 H 0.048 0.952 49 H 0.053 0.947 50 H 0.074 0.926 51 H 0.130 0.870 52 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -11.149 17.010 -6.633 21.392 hybrid contribution 0.002 -0.192 1.564 1.576 sum -11.146 16.818 -5.069 20.803 Atomic orbital electron populations 1.21866 0.97236 1.01194 1.00988 1.21312 0.93560 0.95434 1.03362 1.21866 0.94205 0.96933 0.97060 0.91396 1.22482 0.97427 0.98390 0.97590 1.22420 0.95017 0.98031 1.00635 1.23135 0.98090 0.99614 0.98510 1.22314 0.94591 0.88970 0.96657 0.90616 1.60772 1.25039 1.17092 1.27532 1.20668 0.88415 0.93479 0.98773 1.19181 1.05521 0.95858 0.96904 1.20650 0.96533 0.94743 0.96806 1.20840 1.06737 0.93971 0.99464 1.17950 0.90793 0.84854 0.92969 1.47093 1.56264 1.08317 1.20507 1.21469 0.99055 0.95603 0.88443 1.19272 0.90478 0.94275 0.83017 1.21551 0.93900 1.37382 1.04218 0.92293 1.24961 0.95130 0.95977 0.97982 1.69921 1.11090 1.45033 1.27426 0.86581 0.80698 0.79625 0.80710 1.20218 1.21191 1.20089 1.20572 1.07098 0.96858 1.00062 1.20478 0.96908 0.92839 0.96840 0.93090 0.93331 0.93356 0.90468 0.92231 0.91544 0.92088 0.91733 0.91901 0.91974 0.91442 0.83727 0.91358 0.95456 0.87575 0.85198 0.94654 0.91489 0.92661 0.95239 0.94673 0.92596 0.86968 0.87374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.41 9.75 37.16 0.36 -1.05 16 2 C -0.10 -1.00 4.29 -26.73 -0.11 -1.12 16 3 C -0.08 -0.74 2.96 -89.32 -0.26 -1.00 16 4 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 5 C -0.12 -1.00 5.45 -25.07 -0.14 -1.13 16 6 C -0.12 -0.98 6.91 -24.74 -0.17 -1.15 16 7 C -0.15 -1.37 6.39 -25.07 -0.16 -1.54 16 8 C 0.09 0.82 3.21 -66.42 -0.21 0.60 16 9 H 0.08 0.73 7.83 -51.93 -0.41 0.32 16 10 N -0.67 -7.65 4.40 -106.62 -0.47 -8.12 16 11 C 0.11 1.40 5.63 -4.97 -0.03 1.38 16 12 C -0.17 -2.62 5.39 -104.59 -0.56 -3.18 16 13 C -0.07 -1.15 9.69 -39.61 -0.38 -1.54 16 14 C -0.19 -3.80 9.21 -39.38 -0.36 -4.16 16 15 C 0.24 4.91 6.55 -83.79 -0.55 4.36 16 16 N -0.62 -13.29 2.99 -181.00 -0.54 -13.83 16 17 C 0.10 1.75 10.19 59.84 0.61 2.36 16 18 C 0.25 6.28 4.91 -5.19 -0.03 6.26 16 19 C -0.53 -14.56 9.39 -34.44 -0.32 -14.88 16 20 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 21 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 22 N -0.90 -25.70 13.29 55.43 0.74 -24.97 16 23 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 26 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 27 C -0.22 -3.91 9.21 -39.38 -0.36 -4.28 16 28 C -0.05 -0.81 9.69 -39.61 -0.38 -1.19 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.41 7.46 -51.93 -0.39 0.02 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.91 7.66 -51.93 -0.40 0.51 16 33 H 0.06 0.66 7.57 -51.93 -0.39 0.27 16 34 H 0.07 0.58 7.78 -51.93 -0.40 0.18 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.65 7.59 -51.93 -0.39 0.26 16 40 H 0.34 4.15 7.74 -39.29 -0.30 3.85 16 41 H 0.07 0.80 8.01 -51.93 -0.42 0.38 16 42 H 0.03 0.32 8.04 -51.93 -0.42 -0.09 16 43 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 44 H 0.13 2.91 6.14 -52.49 -0.32 2.59 16 45 H 0.04 0.56 8.14 -51.92 -0.42 0.14 16 46 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 47 H 0.05 0.87 6.20 -51.93 -0.32 0.55 16 48 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 49 H 0.04 0.93 6.20 -51.93 -0.32 0.61 16 50 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 51 H 0.11 1.79 6.14 -52.49 -0.32 1.47 16 52 H 0.11 1.48 8.06 -52.48 -0.42 1.06 16 LS Contribution 403.70 15.07 6.08 6.08 Total: -1.00 -27.89 403.70 -11.80 -39.69 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -9.42 Total: 4.47 kcal Atomic # 6 Polarization: -16.49 SS G_CDS: -3.17 Total: -19.65 kcal Atomic # 7 Polarization: -46.64 SS G_CDS: -0.27 Total: -46.92 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -27.89 -11.80 -39.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154134460.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.616 kcal (2) G-P(sol) polarization free energy of solvation -27.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds