Wall clock time and date at job start Tue Mar 31 2020 11:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47336 * 2 1 4 4 H 1.09004 * 110.05352 * 305.03710 * 3 2 1 5 5 C 1.54266 * 110.03482 * 66.45433 * 3 2 1 6 6 C 1.54891 * 104.31343 * 142.96208 * 5 3 2 7 7 C 1.54892 * 102.74959 * 321.99283 * 6 5 3 8 8 C 1.54224 * 110.14449 * 183.47947 * 3 2 1 9 9 H 1.09000 * 110.04153 * 121.41916 * 8 3 2 10 10 N 1.46892 * 110.02257 * 0.03906 * 8 3 2 11 11 C 1.46905 * 111.00152 * 156.33915 * 10 8 3 12 12 C 1.50699 * 109.47229 * 179.97438 * 11 10 8 13 13 C 1.38288 * 119.92224 * 269.72861 * 12 11 10 14 14 C 1.38106 * 120.07463 * 179.73011 * 13 12 11 15 15 C 1.38916 * 119.92013 * 0.53846 * 14 13 12 16 16 N 1.39674 * 120.07228 * 179.75063 * 15 14 13 17 17 C 1.46494 * 120.00033 * 179.97438 * 16 15 14 18 18 C 1.46500 * 120.00175 * 359.97438 * 16 15 14 19 19 C 1.50700 * 109.47276 * 89.99773 * 18 16 15 20 20 H 1.07995 * 120.00068 * 359.97438 * 19 18 16 21 21 C 1.37877 * 120.00082 * 180.02562 * 19 18 16 22 22 N 1.31516 * 120.00100 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00271 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46867 * 59.99704 * 23 21 19 25 25 H 1.48494 * 109.47289 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.47193 * 300.00165 * 23 21 19 27 27 C 1.38908 * 119.85442 * 359.72985 * 15 14 13 28 28 C 1.38108 * 119.92129 * 0.02562 * 27 15 14 29 29 H 1.09005 * 109.47075 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46762 * 300.00015 * 1 2 3 31 31 H 1.08993 * 109.47312 * 60.00107 * 1 2 3 32 32 H 1.08999 * 109.47163 * 239.99341 * 2 1 3 33 33 H 1.09002 * 109.47084 * 120.00024 * 2 1 3 34 34 H 1.09002 * 110.48609 * 24.21622 * 5 3 2 35 35 H 1.08998 * 110.48769 * 261.70715 * 5 3 2 36 36 H 1.09000 * 110.75322 * 80.30558 * 6 5 3 37 37 H 1.09002 * 110.75658 * 203.67757 * 6 5 3 38 38 H 1.08993 * 110.48715 * 156.62375 * 7 6 5 39 39 H 1.09001 * 110.48596 * 279.13315 * 7 6 5 40 40 H 1.00902 * 110.99749 * 280.29035 * 10 8 3 41 41 H 1.08998 * 109.46521 * 299.99992 * 11 10 8 42 42 H 1.09001 * 109.47084 * 59.99549 * 11 10 8 43 43 H 1.08004 * 119.96266 * 359.96820 * 13 12 11 44 44 H 1.07993 * 120.04189 * 180.27062 * 14 13 12 45 45 H 1.09011 * 109.46957 * 90.00140 * 17 16 15 46 46 H 1.08998 * 109.47406 * 209.99786 * 17 16 15 47 47 H 1.09000 * 109.47710 * 330.00514 * 17 16 15 48 48 H 1.08997 * 109.47364 * 209.99819 * 18 16 15 49 49 H 1.09004 * 109.46720 * 329.99907 * 18 16 15 50 50 H 0.97001 * 120.00155 * 179.97438 * 22 21 19 51 51 H 1.07995 * 120.04170 * 179.97438 * 27 15 14 52 52 H 1.08003 * 119.95902 * 180.02562 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6104 1.9908 -0.8384 5 6 1.6704 2.1337 1.3286 6 6 2.8897 3.0355 1.6433 7 6 4.0863 2.1631 1.1890 8 6 3.5797 1.4614 -0.0879 9 1 3.8966 2.0173 -0.9702 10 7 4.0970 0.0878 -0.1463 11 6 5.4245 0.0515 -0.7746 12 6 5.9218 -1.3705 -0.8162 13 6 6.6664 -1.8718 0.2358 14 6 7.1191 -3.1762 0.2035 15 6 6.8351 -3.9813 -0.8924 16 7 7.2958 -5.2993 -0.9307 17 6 6.9949 -6.1471 -2.0869 18 6 8.0798 -5.8340 0.1854 19 6 7.1529 -6.4536 1.1992 20 1 6.0863 -6.4491 1.0294 21 6 7.6663 -7.0252 2.3441 22 7 8.9650 -7.0302 2.5511 23 14 6.5172 -7.7926 3.6011 24 1 5.7500 -8.8928 2.9637 25 1 7.3120 -8.3346 4.7323 26 1 5.5760 -6.7609 4.1063 27 6 6.0917 -3.4727 -1.9498 28 6 5.6378 -2.1690 -1.9087 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.5291 1.3943 2.1170 35 1 0.7708 2.7371 1.2073 36 1 2.8452 3.9600 1.0677 37 1 2.9489 3.2464 2.7111 38 1 4.9503 2.7883 0.9636 39 1 4.3368 1.4300 1.9558 40 1 4.1202 -0.3292 0.7722 41 1 5.3567 0.4430 -1.7896 42 1 6.1174 0.6617 -0.1953 43 1 6.8909 -1.2438 1.0853 44 1 7.6968 -3.5685 1.0273 45 1 7.7854 -6.0417 -2.8302 46 1 6.9323 -7.1875 -1.7681 47 1 6.0434 -5.8428 -2.5229 48 1 8.7707 -6.5910 -0.1856 49 1 8.6429 -5.0265 0.6536 50 1 9.3262 -7.4320 3.3567 51 1 5.8695 -4.0958 -2.8035 52 1 5.0594 -1.7731 -2.7304 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000154134460.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:23 Heat of formation + Delta-G solvation = -0.029398 kcal Electronic energy + Delta-G solvation = -26413.015437 eV Core-core repulsion = 22989.646199 eV Total energy + Delta-G solvation = -3423.369238 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.55132 -39.90283 -37.52933 -35.35940 -34.60424 -33.78140 -31.87107 -31.26114 -29.62404 -28.36972 -28.16957 -26.64884 -25.25483 -23.63195 -23.38283 -22.94031 -21.63308 -21.00855 -19.85291 -18.63671 -18.15494 -17.15677 -16.83959 -16.38435 -16.27542 -15.70344 -15.53443 -15.29516 -15.19220 -14.91098 -14.69809 -14.31520 -14.20439 -14.09143 -13.99672 -13.75211 -13.32803 -13.17877 -13.14072 -13.01956 -12.71668 -12.67598 -12.52805 -12.47939 -12.17885 -12.07610 -11.95314 -11.83551 -11.76132 -11.58065 -11.39233 -11.32398 -11.16956 -11.09139 -10.64610 -10.39803 -9.65079 -9.12205 -8.36223 -7.79206 -6.38050 0.72428 0.86634 1.36708 1.38478 1.46900 2.33935 2.64200 3.04686 3.05930 3.53136 3.73351 3.81295 4.03574 4.08463 4.18055 4.27549 4.35794 4.41561 4.47819 4.49792 4.58453 4.61927 4.65044 4.69713 4.72385 4.76316 4.81443 4.84471 4.88513 4.92953 4.99324 5.01653 5.04390 5.09017 5.14708 5.20394 5.21399 5.26136 5.34599 5.34897 5.41464 5.46088 5.59634 5.63433 5.69306 5.70564 5.74187 5.95317 6.06938 6.21417 6.32910 6.50453 6.54468 6.82554 6.94714 7.33887 8.82682 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012898 B = 0.002904 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2170.281948 B = 9639.719964 C =10383.605860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.094 4.094 3 C -0.078 4.078 4 H 0.075 0.925 5 C -0.118 4.118 6 C -0.120 4.120 7 C -0.153 4.153 8 C 0.087 3.913 9 H 0.082 0.918 10 N -0.677 5.677 11 C 0.121 3.879 12 C -0.156 4.156 13 C -0.069 4.069 14 C -0.216 4.216 15 C 0.212 3.788 16 N -0.633 5.633 17 C 0.098 3.902 18 C 0.267 3.733 19 C -0.542 4.542 20 H 0.049 0.951 21 C 0.013 3.987 22 N -0.927 5.927 23 Si 0.961 3.039 24 H -0.268 1.268 25 H -0.278 1.278 26 H -0.273 1.273 27 C -0.218 4.218 28 C -0.048 4.048 29 H 0.045 0.955 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.044 0.956 34 H 0.057 0.943 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.056 0.944 40 H 0.338 0.662 41 H 0.083 0.917 42 H 0.034 0.966 43 H 0.120 0.880 44 H 0.093 0.907 45 H 0.052 0.948 46 H 0.055 0.945 47 H 0.078 0.922 48 H 0.009 0.991 49 H 0.010 0.990 50 H 0.267 0.733 51 H 0.131 0.869 52 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.283 19.460 -7.079 24.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.132 4.132 3 C -0.097 4.097 4 H 0.094 0.906 5 C -0.156 4.156 6 C -0.157 4.157 7 C -0.192 4.192 8 C -0.024 4.024 9 H 0.100 0.900 10 N -0.307 5.307 11 C -0.008 4.008 12 C -0.159 4.159 13 C -0.088 4.088 14 C -0.239 4.239 15 C 0.107 3.893 16 N -0.341 5.341 17 C -0.045 4.045 18 C 0.145 3.855 19 C -0.581 4.581 20 H 0.067 0.933 21 C -0.186 4.186 22 N -0.567 5.567 23 Si 0.786 3.214 24 H -0.193 1.193 25 H -0.203 1.203 26 H -0.199 1.199 27 C -0.241 4.241 28 C -0.067 4.067 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.063 0.937 34 H 0.076 0.924 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.075 0.925 40 H 0.156 0.844 41 H 0.101 0.899 42 H 0.052 0.948 43 H 0.138 0.862 44 H 0.112 0.888 45 H 0.071 0.929 46 H 0.074 0.926 47 H 0.096 0.904 48 H 0.027 0.973 49 H 0.028 0.972 50 H 0.076 0.924 51 H 0.149 0.851 52 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -13.383 19.011 -7.574 24.452 hybrid contribution 0.658 -0.671 1.804 2.034 sum -12.725 18.340 -5.771 23.056 Atomic orbital electron populations 1.21837 0.96403 1.01104 1.01674 1.21225 0.94288 0.95904 1.01803 1.21846 0.93780 0.96276 0.97823 0.90645 1.22451 0.98066 0.98304 0.96791 1.22414 0.94189 0.98117 1.01023 1.23096 0.98689 0.99533 0.97890 1.22359 0.94869 0.87925 0.97202 0.90015 1.60760 1.24315 1.18437 1.27229 1.20636 0.88967 0.91221 0.99930 1.19533 1.03395 0.97309 0.95635 1.20816 0.96370 0.93590 0.98030 1.20746 1.08244 0.95786 0.99132 1.18214 0.92398 0.84456 0.94184 1.46960 1.57059 1.09468 1.20603 1.21594 1.00808 0.94507 0.87563 1.18757 0.90134 0.92657 0.83906 1.21753 0.93595 1.37590 1.05178 0.93312 1.25780 0.96620 0.96375 0.99856 1.70030 1.12715 1.45797 1.28119 0.85566 0.78734 0.78818 0.78326 1.19338 1.20308 1.19859 1.20811 1.05921 0.97856 0.99506 1.20861 0.96211 0.92026 0.97649 0.93618 0.92697 0.92577 0.92041 0.93678 0.92374 0.91026 0.90720 0.91602 0.91604 0.92488 0.84358 0.89850 0.94802 0.86165 0.88842 0.92941 0.92575 0.90380 0.97331 0.97172 0.92364 0.85109 0.84286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 9.75 71.98 0.70 -1.81 16 2 C -0.09 -1.77 4.29 30.59 0.13 -1.63 16 3 C -0.08 -1.23 2.96 -9.95 -0.03 -1.26 16 4 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 5 C -0.12 -1.68 5.45 31.67 0.17 -1.51 16 6 C -0.12 -1.61 6.91 31.89 0.22 -1.38 16 7 C -0.15 -2.40 6.39 31.67 0.20 -2.20 16 8 C 0.09 1.44 3.21 45.76 0.15 1.59 16 9 H 0.08 1.30 7.83 -2.39 -0.02 1.28 16 10 N -0.68 -13.94 4.40 -491.23 -2.16 -16.10 16 11 C 0.12 2.62 5.63 85.56 0.48 3.10 16 12 C -0.16 -4.46 5.39 -19.84 -0.11 -4.57 16 13 C -0.07 -2.33 9.69 22.25 0.22 -2.12 16 14 C -0.22 -9.15 9.21 22.40 0.21 -8.94 16 15 C 0.21 8.79 6.55 38.21 0.25 9.04 16 16 N -0.63 -28.23 2.99 -726.56 -2.17 -30.40 16 17 C 0.10 3.48 10.19 127.77 1.30 4.79 16 18 C 0.27 14.26 4.91 85.63 0.42 14.68 16 19 C -0.54 -30.90 9.39 25.60 0.24 -30.66 16 20 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 21 C 0.01 0.73 5.46 84.65 0.46 1.19 16 22 N -0.93 -54.90 13.29 21.45 0.28 -54.62 16 23 Si 0.96 44.46 29.54 68.60 2.03 46.48 16 24 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 25 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 26 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 27 C -0.22 -7.34 9.21 22.40 0.21 -7.13 16 28 C -0.05 -1.40 9.69 22.25 0.22 -1.18 16 29 H 0.04 0.79 8.14 -2.38 -0.02 0.77 16 30 H 0.05 0.83 7.46 -2.39 -0.02 0.81 16 31 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.06 1.34 7.66 -2.39 -0.02 1.33 16 33 H 0.04 0.96 7.57 -2.39 -0.02 0.95 16 34 H 0.06 0.93 7.78 -2.39 -0.02 0.91 16 35 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.06 1.02 7.59 -2.39 -0.02 1.00 16 40 H 0.34 7.72 7.74 -89.69 -0.69 7.02 16 41 H 0.08 1.62 8.01 -2.39 -0.02 1.60 16 42 H 0.03 0.71 8.04 -2.39 -0.02 0.69 16 43 H 0.12 3.63 8.06 -2.91 -0.02 3.60 16 44 H 0.09 4.57 6.14 -2.91 -0.02 4.55 16 45 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 46 H 0.06 2.07 8.07 -2.39 -0.02 2.05 16 47 H 0.08 2.36 6.20 -2.39 -0.01 2.35 16 48 H 0.01 0.49 8.07 -2.39 -0.02 0.47 16 49 H 0.01 0.59 6.20 -2.38 -0.01 0.58 16 50 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 51 H 0.13 3.85 6.14 -2.91 -0.02 3.83 16 52 H 0.14 3.21 8.06 -2.91 -0.02 3.18 16 Total: -1.00 -62.03 403.70 3.59 -58.43 By element: Atomic # 1 Polarization: 26.02 SS G_CDS: 0.18 Total: 26.20 kcal Atomic # 6 Polarization: -35.44 SS G_CDS: 5.44 Total: -30.00 kcal Atomic # 7 Polarization: -97.07 SS G_CDS: -4.05 Total: -101.12 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.48 kcal Total: -62.03 3.59 -58.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154134460.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.405 kcal (2) G-P(sol) polarization free energy of solvation -62.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds