Wall clock time and date at job start Tue Mar 31 2020 11:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46909 * 2 1 4 4 C 1.53001 * 109.47398 * 240.00355 * 2 1 3 5 5 C 1.50693 * 109.47355 * 59.99996 * 4 2 1 6 6 H 1.08010 * 120.00071 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00265 * 180.02562 * 5 4 2 8 8 N 1.31519 * 119.99724 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00062 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47355 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47100 * 120.00129 * 9 7 5 12 12 H 1.48505 * 109.46872 * 239.99882 * 9 7 5 13 13 C 1.53002 * 109.47117 * 119.99798 * 2 1 3 14 14 N 1.46903 * 109.47082 * 294.50805 * 13 2 1 15 15 C 1.46949 * 111.00093 * 86.75639 * 14 13 2 16 16 C 1.53049 * 109.36590 * 183.18617 * 15 14 13 17 17 N 1.46955 * 109.36686 * 301.59805 * 16 15 14 18 18 C 1.46894 * 111.00263 * 183.18695 * 17 16 15 19 19 C 1.50696 * 109.47187 * 170.00170 * 18 17 16 20 20 C 1.38235 * 120.00422 * 89.99831 * 19 18 17 21 21 C 1.38237 * 120.00397 * 179.97438 * 20 19 18 22 22 C 1.38235 * 119.99538 * 359.97438 * 21 20 19 23 23 C 1.38231 * 120.00193 * 359.97438 * 22 21 20 24 24 C 1.38230 * 120.00211 * 0.07240 * 23 22 21 25 25 C 1.46962 * 110.87594 * 59.31740 * 17 16 15 26 26 C 1.46956 * 110.99707 * 210.55380 * 14 13 2 27 27 H 1.08993 * 109.47470 * 311.99947 * 1 2 3 28 28 H 1.09004 * 109.46682 * 72.00148 * 1 2 3 29 29 H 1.08998 * 109.47068 * 191.99423 * 1 2 3 30 30 H 1.08995 * 109.47305 * 175.43321 * 3 2 1 31 31 H 1.08995 * 109.47616 * 295.44043 * 3 2 1 32 32 H 1.09010 * 109.46960 * 55.43754 * 3 2 1 33 33 H 1.08999 * 109.46897 * 179.97438 * 4 2 1 34 34 H 1.09003 * 109.46560 * 299.99867 * 4 2 1 35 35 H 0.96996 * 119.99857 * 180.02562 * 8 7 5 36 36 H 1.08992 * 109.47217 * 174.50590 * 13 2 1 37 37 H 1.08998 * 109.46486 * 54.50532 * 13 2 1 38 38 H 1.09003 * 109.49413 * 63.21597 * 15 14 13 39 39 H 1.09004 * 109.48946 * 303.15592 * 15 14 13 40 40 H 1.08998 * 109.49181 * 181.62814 * 16 15 14 41 41 H 1.09000 * 109.48678 * 61.56521 * 16 15 14 42 42 H 1.08995 * 109.47365 * 49.99906 * 18 17 16 43 43 H 1.08999 * 109.46836 * 290.00004 * 18 17 16 44 44 H 1.08005 * 119.99760 * 359.97438 * 20 19 18 45 45 H 1.08000 * 119.99739 * 180.02562 * 21 20 19 46 46 H 1.08004 * 119.99637 * 179.72201 * 22 21 20 47 47 H 1.08007 * 119.99605 * 179.97438 * 23 22 21 48 48 H 1.07996 * 120.00223 * 179.97438 * 24 23 22 49 49 H 1.08995 * 109.49117 * 60.65376 * 25 17 16 50 50 H 1.09005 * 109.48304 * 180.71479 * 25 17 16 51 51 H 1.09000 * 109.49070 * 296.77809 * 26 14 13 52 52 H 1.09006 * 109.48853 * 56.84536 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 1.5379 -0.0108 -2.4797 6 1 0.9165 0.8672 -2.3806 7 6 1.8706 -0.4820 -3.7320 8 7 2.6259 -1.5519 -3.8526 9 14 1.2474 0.3982 -5.2571 10 1 0.4219 1.5646 -4.8530 11 1 2.4021 0.8647 -6.0659 12 1 0.4222 -0.5355 -6.0650 13 6 2.0400 -0.7212 1.2493 14 7 1.6616 0.0436 2.4450 15 6 0.3164 -0.3288 2.9045 16 6 -0.0711 0.5439 4.1006 17 7 0.9168 0.3663 5.1739 18 6 0.5384 1.1311 6.3696 19 6 1.4285 0.7375 7.5202 20 6 2.6114 1.4171 7.7429 21 6 3.4276 1.0563 8.7986 22 6 3.0605 0.0163 9.6320 23 6 1.8771 -0.6626 9.4099 24 6 1.0614 -0.3025 8.3536 25 6 2.2621 0.7388 4.7143 26 6 2.6496 -0.1341 3.5183 27 1 -0.3634 0.6876 0.7636 28 1 -0.3633 0.3176 -0.9774 29 1 -0.3633 -1.0052 0.2136 30 1 3.1269 1.4437 0.0818 31 1 1.7449 1.9323 -0.9279 32 1 1.6114 1.9794 0.8464 33 1 3.1301 -0.7207 -1.2494 34 1 1.6768 -1.7489 -1.2492 35 1 2.8603 -1.8833 -4.7336 36 1 3.1255 -0.8072 1.2015 37 1 1.5985 -1.7165 1.2998 38 1 0.3111 -1.3773 3.2026 39 1 -0.3991 -0.1767 2.0963 40 1 -1.0568 0.2498 4.4612 41 1 -0.0925 1.5902 3.7955 42 1 -0.4998 0.9178 6.6239 43 1 0.6521 2.1967 6.1703 44 1 2.8980 2.2299 7.0920 45 1 4.3517 1.5876 8.9728 46 1 3.7004 -0.2685 10.4541 47 1 1.5905 -1.4755 10.0608 48 1 0.1370 -0.8332 8.1799 49 1 2.2673 1.7872 4.4163 50 1 2.9775 0.5866 5.5225 51 1 2.6709 -1.1803 3.8234 52 1 3.6353 0.1601 3.1576 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000154477935.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:55 Heat of formation + Delta-G solvation = 29.146406 kcal Electronic energy + Delta-G solvation = -26882.368522 eV Core-core repulsion = 23460.264442 eV Total energy + Delta-G solvation = -3422.104080 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.96577 -38.95911 -36.95755 -34.54294 -32.32674 -31.63658 -31.20780 -30.69778 -28.08627 -26.89933 -26.32853 -25.38417 -23.62524 -23.47694 -22.66146 -22.15923 -21.17846 -19.64138 -17.85981 -17.01776 -16.22163 -16.15240 -15.66080 -15.50306 -14.93515 -14.79623 -14.68214 -14.44100 -14.13195 -13.98266 -13.62603 -13.22858 -12.99374 -12.82458 -12.66541 -12.54491 -12.27309 -12.01860 -11.97130 -11.52055 -11.44738 -11.21422 -11.18818 -10.98075 -10.92142 -10.71921 -10.68755 -10.57381 -10.26740 -10.26352 -9.90935 -9.58355 -9.13323 -9.01728 -8.92098 -8.81751 -8.41369 -8.29240 -7.89036 -5.93782 -3.93375 1.09985 1.18287 3.33864 3.41713 3.45257 3.45405 3.99544 4.20836 4.51249 4.51897 4.61278 4.77436 4.87376 4.93375 5.04588 5.16118 5.23927 5.26867 5.39005 5.40852 5.42046 5.48595 5.51030 5.58652 5.74164 5.76865 5.80266 5.82116 5.88061 5.99276 6.05099 6.10598 6.13860 6.22471 6.28207 6.33213 6.37091 6.40046 6.60211 6.75714 6.75862 6.83548 6.89622 6.92412 6.95614 7.27435 7.28962 7.33378 7.45454 7.53760 7.75135 7.90492 8.07159 8.52014 9.12271 9.69054 11.17937 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.035183 B = 0.002297 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.654867 B =12184.802309 C =12373.599407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.051 4.051 3 C -0.112 4.112 4 C 0.032 3.968 5 C -0.504 4.504 6 H 0.060 0.940 7 C 0.053 3.947 8 N -0.898 5.898 9 Si 0.887 3.113 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.286 1.286 13 C 0.066 3.934 14 N -0.531 5.531 15 C 0.043 3.957 16 C 0.059 3.941 17 N -0.534 5.534 18 C 0.092 3.908 19 C -0.074 4.074 20 C -0.114 4.114 21 C -0.122 4.122 22 C -0.123 4.123 23 C -0.122 4.122 24 C -0.099 4.099 25 C 0.057 3.943 26 C 0.057 3.943 27 H 0.042 0.958 28 H 0.065 0.935 29 H 0.036 0.964 30 H 0.034 0.966 31 H 0.054 0.946 32 H 0.041 0.959 33 H 0.014 0.986 34 H 0.012 0.988 35 H 0.258 0.742 36 H 0.063 0.937 37 H 0.033 0.967 38 H 0.035 0.965 39 H 0.100 0.900 40 H 0.074 0.926 41 H 0.042 0.958 42 H 0.081 0.919 43 H 0.042 0.958 44 H 0.119 0.881 45 H 0.120 0.880 46 H 0.119 0.881 47 H 0.120 0.880 48 H 0.121 0.879 49 H 0.040 0.960 50 H 0.077 0.923 51 H 0.035 0.965 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.319 4.429 26.209 26.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.051 4.051 3 C -0.170 4.170 4 C -0.005 4.005 5 C -0.542 4.542 6 H 0.078 0.922 7 C -0.147 4.147 8 N -0.538 5.538 9 Si 0.715 3.285 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.212 1.212 13 C -0.061 4.061 14 N -0.255 5.255 15 C -0.085 4.085 16 C -0.069 4.069 17 N -0.259 5.259 18 C -0.035 4.035 19 C -0.074 4.074 20 C -0.132 4.132 21 C -0.140 4.140 22 C -0.142 4.142 23 C -0.140 4.140 24 C -0.118 4.118 25 C -0.071 4.071 26 C -0.071 4.071 27 H 0.060 0.940 28 H 0.084 0.916 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.032 0.968 34 H 0.030 0.970 35 H 0.067 0.933 36 H 0.081 0.919 37 H 0.051 0.949 38 H 0.053 0.947 39 H 0.118 0.882 40 H 0.093 0.907 41 H 0.060 0.940 42 H 0.100 0.900 43 H 0.061 0.939 44 H 0.137 0.863 45 H 0.138 0.862 46 H 0.137 0.863 47 H 0.138 0.862 48 H 0.139 0.861 49 H 0.059 0.941 50 H 0.096 0.904 51 H 0.054 0.946 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.252 4.320 26.062 26.514 hybrid contribution -0.135 0.245 -0.907 0.949 sum -2.386 4.565 25.156 25.678 Atomic orbital electron populations 1.21984 0.96274 0.99269 1.01380 1.20552 0.94731 0.95962 0.93883 1.21563 0.99210 0.95978 1.00218 1.19132 0.96024 0.95062 0.90306 1.21276 1.30547 1.11805 0.90582 0.92205 1.25026 0.95489 0.95142 0.99058 1.69980 1.37455 1.23222 1.23120 0.86614 0.78594 0.79720 0.83538 1.19783 1.21200 1.21227 1.22330 0.99777 0.94350 0.89621 1.62169 1.01420 1.57087 1.04854 1.22589 0.92400 0.96883 0.96672 1.22189 0.94746 0.99127 0.90828 1.62191 1.02848 1.55934 1.04912 1.21026 0.98153 0.95667 0.88653 1.19766 0.95507 0.96140 0.96021 1.21092 0.94331 1.00039 0.97782 1.21120 0.99655 0.97734 0.95451 1.21143 0.96923 0.96421 0.99671 1.21151 0.94978 0.99886 0.98023 1.21022 0.99922 0.96284 0.94549 1.22232 0.90329 0.97838 0.96693 1.22156 0.95979 0.98022 0.90964 0.93956 0.91630 0.94520 0.94644 0.92716 0.93978 0.96804 0.96963 0.93266 0.91853 0.94854 0.94713 0.88245 0.90729 0.93969 0.90024 0.93936 0.86310 0.86190 0.86317 0.86207 0.86066 0.94132 0.90442 0.94633 0.90542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.48 6.87 37.16 0.26 -2.23 16 2 C -0.05 -1.02 0.61 -154.51 -0.09 -1.11 16 3 C -0.11 -2.20 7.98 37.16 0.30 -1.90 16 4 C 0.03 0.82 4.04 -27.89 -0.11 0.70 16 5 C -0.50 -13.81 7.42 -34.44 -0.26 -14.06 16 6 H 0.06 1.60 5.77 -52.48 -0.30 1.30 16 7 C 0.05 1.51 5.46 -17.82 -0.10 1.42 16 8 N -0.90 -26.97 13.29 55.43 0.74 -26.23 16 9 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 10 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 C 0.07 1.17 4.24 -3.82 -0.02 1.15 16 14 N -0.53 -7.96 3.64 -234.47 -0.85 -8.82 16 15 C 0.04 0.58 5.09 -3.77 -0.02 0.56 16 16 C 0.06 0.68 5.61 -3.77 -0.02 0.66 16 17 N -0.53 -6.03 4.70 -235.92 -1.11 -7.14 16 18 C 0.09 0.87 5.12 -4.98 -0.03 0.85 16 19 C -0.07 -0.70 4.89 -104.62 -0.51 -1.21 16 20 C -0.11 -1.03 7.92 -39.58 -0.31 -1.34 16 21 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 22 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 23 C -0.12 -1.02 10.05 -39.59 -0.40 -1.41 16 24 C -0.10 -0.90 9.70 -39.58 -0.38 -1.29 16 25 C 0.06 0.67 5.25 -3.76 -0.02 0.65 16 26 C 0.06 0.77 5.49 -3.77 -0.02 0.75 16 27 H 0.04 0.70 6.10 -51.93 -0.32 0.38 16 28 H 0.06 1.36 6.32 -51.93 -0.33 1.03 16 29 H 0.04 0.66 7.82 -51.93 -0.41 0.25 16 30 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.05 1.15 6.48 -51.93 -0.34 0.82 16 32 H 0.04 0.75 7.59 -51.92 -0.39 0.36 16 33 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 36 H 0.06 1.14 7.67 -51.93 -0.40 0.74 16 37 H 0.03 0.60 7.76 -51.93 -0.40 0.20 16 38 H 0.03 0.50 8.12 -51.93 -0.42 0.08 16 39 H 0.10 1.40 4.23 -51.93 -0.22 1.18 16 40 H 0.07 0.75 8.07 -51.93 -0.42 0.33 16 41 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.08 0.69 7.97 -51.93 -0.41 0.28 16 43 H 0.04 0.39 8.06 -51.93 -0.42 -0.03 16 44 H 0.12 0.97 7.99 -52.48 -0.42 0.55 16 45 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 46 H 0.12 0.72 8.06 -52.48 -0.42 0.29 16 47 H 0.12 0.77 8.06 -52.48 -0.42 0.34 16 48 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 49 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 50 H 0.08 0.86 5.95 -51.93 -0.31 0.55 16 51 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 52 H 0.08 1.01 7.98 -51.93 -0.41 0.59 16 LS Contribution 391.58 15.07 5.90 5.90 Total: -1.00 -29.79 391.58 -12.16 -41.95 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -9.28 Total: -1.71 kcal Atomic # 6 Polarization: -18.09 SS G_CDS: -2.53 Total: -20.62 kcal Atomic # 7 Polarization: -40.96 SS G_CDS: -1.23 Total: -42.18 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -29.79 -12.16 -41.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154477935.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.099 kcal (2) G-P(sol) polarization free energy of solvation -29.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds