Wall clock time and date at job start Tue Mar 31 2020 11:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46909 * 2 1 4 4 C 1.53001 * 109.47398 * 240.00355 * 2 1 3 5 5 C 1.50693 * 109.47355 * 59.99996 * 4 2 1 6 6 H 1.08010 * 120.00071 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00265 * 180.02562 * 5 4 2 8 8 N 1.31519 * 119.99724 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00062 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47355 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47100 * 120.00129 * 9 7 5 12 12 H 1.48505 * 109.46872 * 239.99882 * 9 7 5 13 13 C 1.53002 * 109.47117 * 119.99798 * 2 1 3 14 14 N 1.46903 * 109.47082 * 294.50805 * 13 2 1 15 15 C 1.46949 * 111.00093 * 86.75639 * 14 13 2 16 16 C 1.53049 * 109.36590 * 183.18617 * 15 14 13 17 17 N 1.46955 * 109.36686 * 301.59805 * 16 15 14 18 18 C 1.46894 * 111.00263 * 183.18695 * 17 16 15 19 19 C 1.50696 * 109.47187 * 170.00170 * 18 17 16 20 20 C 1.38235 * 120.00422 * 89.99831 * 19 18 17 21 21 C 1.38237 * 120.00397 * 179.97438 * 20 19 18 22 22 C 1.38235 * 119.99538 * 359.97438 * 21 20 19 23 23 C 1.38231 * 120.00193 * 359.97438 * 22 21 20 24 24 C 1.38230 * 120.00211 * 0.07240 * 23 22 21 25 25 C 1.46962 * 110.87594 * 59.31740 * 17 16 15 26 26 C 1.46956 * 110.99707 * 210.55380 * 14 13 2 27 27 H 1.08993 * 109.47470 * 311.99947 * 1 2 3 28 28 H 1.09004 * 109.46682 * 72.00148 * 1 2 3 29 29 H 1.08998 * 109.47068 * 191.99423 * 1 2 3 30 30 H 1.08995 * 109.47305 * 175.43321 * 3 2 1 31 31 H 1.08995 * 109.47616 * 295.44043 * 3 2 1 32 32 H 1.09010 * 109.46960 * 55.43754 * 3 2 1 33 33 H 1.08999 * 109.46897 * 179.97438 * 4 2 1 34 34 H 1.09003 * 109.46560 * 299.99867 * 4 2 1 35 35 H 0.96996 * 119.99857 * 180.02562 * 8 7 5 36 36 H 1.08992 * 109.47217 * 174.50590 * 13 2 1 37 37 H 1.08998 * 109.46486 * 54.50532 * 13 2 1 38 38 H 1.09003 * 109.49413 * 63.21597 * 15 14 13 39 39 H 1.09004 * 109.48946 * 303.15592 * 15 14 13 40 40 H 1.08998 * 109.49181 * 181.62814 * 16 15 14 41 41 H 1.09000 * 109.48678 * 61.56521 * 16 15 14 42 42 H 1.08995 * 109.47365 * 49.99906 * 18 17 16 43 43 H 1.08999 * 109.46836 * 290.00004 * 18 17 16 44 44 H 1.08005 * 119.99760 * 359.97438 * 20 19 18 45 45 H 1.08000 * 119.99739 * 180.02562 * 21 20 19 46 46 H 1.08004 * 119.99637 * 179.72201 * 22 21 20 47 47 H 1.08007 * 119.99605 * 179.97438 * 23 22 21 48 48 H 1.07996 * 120.00223 * 179.97438 * 24 23 22 49 49 H 1.08995 * 109.49117 * 60.65376 * 25 17 16 50 50 H 1.09005 * 109.48304 * 180.71479 * 25 17 16 51 51 H 1.09000 * 109.49070 * 296.77809 * 26 14 13 52 52 H 1.09006 * 109.48853 * 56.84536 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 1.5379 -0.0108 -2.4797 6 1 0.9165 0.8672 -2.3806 7 6 1.8706 -0.4820 -3.7320 8 7 2.6259 -1.5519 -3.8526 9 14 1.2474 0.3982 -5.2571 10 1 0.4219 1.5646 -4.8530 11 1 2.4021 0.8647 -6.0659 12 1 0.4222 -0.5355 -6.0650 13 6 2.0400 -0.7212 1.2493 14 7 1.6616 0.0436 2.4450 15 6 0.3164 -0.3288 2.9045 16 6 -0.0711 0.5439 4.1006 17 7 0.9168 0.3663 5.1739 18 6 0.5384 1.1311 6.3696 19 6 1.4285 0.7375 7.5202 20 6 2.6114 1.4171 7.7429 21 6 3.4276 1.0563 8.7986 22 6 3.0605 0.0163 9.6320 23 6 1.8771 -0.6626 9.4099 24 6 1.0614 -0.3025 8.3536 25 6 2.2621 0.7388 4.7143 26 6 2.6496 -0.1341 3.5183 27 1 -0.3634 0.6876 0.7636 28 1 -0.3633 0.3176 -0.9774 29 1 -0.3633 -1.0052 0.2136 30 1 3.1269 1.4437 0.0818 31 1 1.7449 1.9323 -0.9279 32 1 1.6114 1.9794 0.8464 33 1 3.1301 -0.7207 -1.2494 34 1 1.6768 -1.7489 -1.2492 35 1 2.8603 -1.8833 -4.7336 36 1 3.1255 -0.8072 1.2015 37 1 1.5985 -1.7165 1.2998 38 1 0.3111 -1.3773 3.2026 39 1 -0.3991 -0.1767 2.0963 40 1 -1.0568 0.2498 4.4612 41 1 -0.0925 1.5902 3.7955 42 1 -0.4998 0.9178 6.6239 43 1 0.6521 2.1967 6.1703 44 1 2.8980 2.2299 7.0920 45 1 4.3517 1.5876 8.9728 46 1 3.7004 -0.2685 10.4541 47 1 1.5905 -1.4755 10.0608 48 1 0.1370 -0.8332 8.1799 49 1 2.2673 1.7872 4.4163 50 1 2.9775 0.5866 5.5225 51 1 2.6709 -1.1803 3.8234 52 1 3.6353 0.1601 3.1576 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000154477935.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:54 Heat of formation + Delta-G solvation = 13.500064 kcal Electronic energy + Delta-G solvation = -26883.046998 eV Core-core repulsion = 23460.264442 eV Total energy + Delta-G solvation = -3422.782557 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.84473 -39.91025 -38.26879 -35.85554 -34.25169 -32.53341 -31.96395 -31.58858 -29.34142 -28.71738 -27.87684 -26.59376 -25.06706 -24.47245 -23.71150 -23.30252 -21.86997 -20.67189 -19.53637 -18.31410 -17.64811 -17.21293 -16.57174 -16.44840 -16.16765 -16.03507 -15.90929 -15.51693 -15.30921 -15.04520 -14.74026 -14.37190 -14.22104 -14.12001 -13.89034 -13.70106 -13.66401 -13.32429 -13.03105 -12.83046 -12.72024 -12.60501 -12.51084 -12.29835 -12.23127 -12.09296 -11.93006 -11.89452 -11.79247 -11.74683 -11.44610 -11.29612 -10.83399 -10.60824 -10.49729 -9.75804 -9.67291 -9.30344 -9.12232 -8.12844 -6.19380 0.46365 0.55787 1.40623 1.41599 1.53896 2.44409 2.75504 2.99618 3.20937 3.22073 3.82236 3.93444 4.00404 4.02931 4.20093 4.21376 4.23990 4.29101 4.36099 4.41593 4.44897 4.47113 4.52359 4.62367 4.65999 4.74220 4.76602 4.82460 4.85489 4.87695 4.94026 4.98266 5.02191 5.10574 5.14687 5.16524 5.21418 5.23147 5.29451 5.54097 5.56651 5.60900 5.63828 5.67508 5.69180 5.74267 5.89058 5.95042 6.00717 6.05190 6.16431 6.22073 6.27753 6.39659 6.95763 7.47512 8.99693 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.035183 B = 0.002297 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.654867 B =12184.802309 C =12373.599407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.046 4.046 3 C -0.101 4.101 4 C 0.039 3.961 5 C -0.509 4.509 6 H 0.066 0.934 7 C -0.007 4.007 8 N -0.938 5.938 9 Si 0.957 3.043 10 H -0.260 1.260 11 H -0.283 1.283 12 H -0.283 1.283 13 C 0.078 3.922 14 N -0.530 5.530 15 C 0.043 3.957 16 C 0.065 3.935 17 N -0.542 5.542 18 C 0.097 3.903 19 C -0.087 4.087 20 C -0.125 4.125 21 C -0.130 4.130 22 C -0.130 4.130 23 C -0.131 4.131 24 C -0.112 4.112 25 C 0.067 3.933 26 C 0.058 3.942 27 H 0.070 0.930 28 H 0.044 0.956 29 H 0.038 0.962 30 H 0.028 0.972 31 H 0.036 0.964 32 H 0.063 0.937 33 H -0.017 1.017 34 H -0.017 1.017 35 H 0.259 0.741 36 H 0.054 0.946 37 H 0.025 0.975 38 H 0.027 0.973 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.041 0.959 42 H 0.092 0.908 43 H 0.045 0.955 44 H 0.124 0.876 45 H 0.136 0.864 46 H 0.138 0.862 47 H 0.136 0.864 48 H 0.127 0.873 49 H 0.039 0.961 50 H 0.084 0.916 51 H 0.027 0.973 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.298 5.802 27.838 28.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.047 4.047 3 C -0.158 4.158 4 C 0.002 3.998 5 C -0.548 4.548 6 H 0.084 0.916 7 C -0.203 4.203 8 N -0.580 5.580 9 Si 0.782 3.218 10 H -0.184 1.184 11 H -0.209 1.209 12 H -0.209 1.209 13 C -0.050 4.050 14 N -0.255 5.255 15 C -0.085 4.085 16 C -0.063 4.063 17 N -0.266 5.266 18 C -0.030 4.030 19 C -0.087 4.087 20 C -0.143 4.143 21 C -0.148 4.148 22 C -0.148 4.148 23 C -0.148 4.148 24 C -0.130 4.130 25 C -0.061 4.061 26 C -0.071 4.071 27 H 0.089 0.911 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.048 0.952 31 H 0.056 0.944 32 H 0.082 0.918 33 H 0.002 0.998 34 H 0.001 0.999 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.043 0.957 38 H 0.045 0.955 39 H 0.114 0.886 40 H 0.112 0.888 41 H 0.059 0.941 42 H 0.111 0.889 43 H 0.064 0.936 44 H 0.142 0.858 45 H 0.154 0.846 46 H 0.156 0.844 47 H 0.154 0.846 48 H 0.145 0.855 49 H 0.057 0.943 50 H 0.103 0.897 51 H 0.046 0.954 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.242 5.708 27.714 28.481 hybrid contribution 0.208 -0.227 -1.327 1.362 sum -3.034 5.481 26.387 27.120 Atomic orbital electron populations 1.21889 0.94892 1.00127 1.01076 1.20408 0.95769 0.95934 0.92587 1.21444 0.98897 0.95360 1.00147 1.19014 0.93993 0.94021 0.92822 1.21632 1.29988 1.11776 0.91363 0.91562 1.25936 0.95811 0.95948 1.02608 1.70121 1.39008 1.24955 1.23915 0.85516 0.78101 0.78803 0.79358 1.18423 1.20900 1.20861 1.22044 0.99027 0.93895 0.90054 1.62121 1.02557 1.56245 1.04535 1.22605 0.91322 0.97052 0.97544 1.22139 0.95643 0.98433 0.90053 1.62179 1.02485 1.56625 1.05358 1.21030 0.98771 0.95517 0.87717 1.19849 0.95890 0.96671 0.96331 1.21245 0.94452 1.00329 0.98279 1.21395 1.00211 0.97930 0.95235 1.21452 0.97101 0.96141 1.00095 1.21428 0.95006 1.00344 0.98063 1.21207 1.00464 0.96449 0.94923 1.22108 0.90995 0.97094 0.95916 1.22192 0.95682 0.98054 0.91134 0.91149 0.93735 0.94299 0.95231 0.94449 0.91762 0.99846 0.99905 0.93222 0.92724 0.95680 0.95467 0.88603 0.88788 0.94067 0.88935 0.93633 0.85828 0.84612 0.84438 0.84576 0.85495 0.94274 0.89749 0.95438 0.90515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.53 6.87 71.98 0.49 -4.03 16 2 C -0.05 -1.87 0.61 -52.18 -0.03 -1.90 16 3 C -0.10 -3.90 7.98 71.98 0.57 -3.32 16 4 C 0.04 2.05 4.04 29.85 0.12 2.17 16 5 C -0.51 -28.38 7.42 25.60 0.19 -28.19 16 6 H 0.07 3.55 5.77 -2.91 -0.02 3.53 16 7 C -0.01 -0.38 5.46 84.65 0.46 0.08 16 8 N -0.94 -57.84 13.29 21.45 0.28 -57.56 16 9 Si 0.96 44.78 29.54 68.60 2.03 46.81 16 10 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 11 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 12 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 13 C 0.08 2.75 4.24 86.30 0.37 3.12 16 14 N -0.53 -15.32 3.64 -895.73 -3.26 -18.58 16 15 C 0.04 1.09 5.09 86.31 0.44 1.53 16 16 C 0.07 1.34 5.61 86.31 0.48 1.83 16 17 N -0.54 -11.10 4.70 -900.31 -4.23 -15.34 16 18 C 0.10 1.61 5.12 85.56 0.44 2.05 16 19 C -0.09 -1.51 4.89 -19.87 -0.10 -1.60 16 20 C -0.12 -2.04 7.92 22.27 0.18 -1.87 16 21 C -0.13 -1.92 10.05 22.27 0.22 -1.70 16 22 C -0.13 -1.83 10.05 22.27 0.22 -1.61 16 23 C -0.13 -1.94 10.05 22.27 0.22 -1.71 16 24 C -0.11 -1.86 9.70 22.27 0.22 -1.64 16 25 C 0.07 1.45 5.25 86.31 0.45 1.91 16 26 C 0.06 1.49 5.49 86.31 0.47 1.97 16 27 H 0.07 2.19 6.10 -2.39 -0.01 2.17 16 28 H 0.04 1.82 6.32 -2.39 -0.02 1.80 16 29 H 0.04 1.38 7.82 -2.39 -0.02 1.37 16 30 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.04 1.55 6.48 -2.39 -0.02 1.53 16 32 H 0.06 2.18 7.59 -2.38 -0.02 2.16 16 33 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 34 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 35 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 36 H 0.05 2.01 7.67 -2.39 -0.02 1.99 16 37 H 0.02 0.92 7.76 -2.39 -0.02 0.90 16 38 H 0.03 0.75 8.12 -2.39 -0.02 0.73 16 39 H 0.10 2.52 4.23 -2.39 -0.01 2.51 16 40 H 0.09 1.60 8.07 -2.39 -0.02 1.58 16 41 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.09 1.33 7.97 -2.39 -0.02 1.31 16 43 H 0.05 0.74 8.06 -2.39 -0.02 0.72 16 44 H 0.12 1.82 7.99 -2.91 -0.02 1.80 16 45 H 0.14 1.48 8.06 -2.91 -0.02 1.46 16 46 H 0.14 1.34 8.06 -2.91 -0.02 1.31 16 47 H 0.14 1.47 8.06 -2.91 -0.02 1.44 16 48 H 0.13 1.86 8.06 -2.91 -0.02 1.84 16 49 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 50 H 0.08 1.74 5.95 -2.38 -0.01 1.72 16 51 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 52 H 0.08 1.97 7.98 -2.38 -0.02 1.95 16 Total: -1.00 -64.51 391.58 1.11 -63.40 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: 0.86 Total: 14.19 kcal Atomic # 6 Polarization: -38.36 SS G_CDS: 5.43 Total: -32.92 kcal Atomic # 7 Polarization: -84.27 SS G_CDS: -7.21 Total: -91.47 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -64.51 1.11 -63.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154477935.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.900 kcal (2) G-P(sol) polarization free energy of solvation -64.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds