Wall clock time and date at job start Tue Mar 31 2020 11:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47284 * 2 1 4 4 N 1.46903 * 109.47133 * 175.12169 * 3 2 1 5 5 C 1.46893 * 110.99774 * 73.98090 * 4 3 2 6 6 C 1.50703 * 109.46927 * 189.99802 * 5 4 3 7 7 C 1.38288 * 119.92262 * 89.99994 * 6 5 4 8 8 C 1.38108 * 120.07251 * 180.29333 * 7 6 5 9 9 C 1.38915 * 119.92184 * 359.45440 * 8 7 6 10 10 N 1.39674 * 120.07008 * 180.28822 * 9 8 7 11 11 C 1.46499 * 119.99639 * 180.25106 * 10 9 8 12 12 C 1.46498 * 120.00382 * 0.25765 * 10 9 8 13 13 C 1.50696 * 109.47346 * 89.99707 * 12 10 9 14 14 H 1.08000 * 119.99797 * 359.97438 * 13 12 10 15 15 C 1.37881 * 120.00141 * 180.02562 * 13 12 10 16 16 N 1.31511 * 119.99835 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99865 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46821 * 90.00067 * 17 15 13 19 19 H 1.48496 * 109.46878 * 209.99671 * 17 15 13 20 20 H 1.48493 * 109.47273 * 329.99926 * 17 15 13 21 21 C 1.38904 * 119.85362 * 0.54773 * 9 8 7 22 22 C 1.38112 * 119.92405 * 359.71883 * 21 9 8 23 23 C 1.46893 * 110.99744 * 197.93191 * 4 3 2 24 24 C 1.53002 * 109.47219 * 67.99477 * 23 4 3 25 25 C 1.53002 * 117.49828 * 243.38673 * 24 23 4 26 26 C 1.52997 * 60.00115 * 252.50909 * 25 24 23 27 27 H 1.09001 * 109.46797 * 59.99920 * 1 2 3 28 28 H 1.09003 * 109.47386 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47178 * 299.99822 * 1 2 3 30 30 H 1.09000 * 109.47178 * 240.00178 * 2 1 3 31 31 H 1.09001 * 109.46797 * 120.00080 * 2 1 3 32 32 H 1.09005 * 109.46678 * 55.12337 * 3 2 1 33 33 H 1.08997 * 109.47017 * 295.12126 * 3 2 1 34 34 H 1.08995 * 109.47629 * 69.99750 * 5 4 3 35 35 H 1.08999 * 109.47359 * 309.99531 * 5 4 3 36 36 H 1.08003 * 119.96696 * 0.02562 * 7 6 5 37 37 H 1.07995 * 120.03745 * 179.72036 * 8 7 6 38 38 H 1.09004 * 109.46791 * 90.00384 * 11 10 9 39 39 H 1.09001 * 109.47346 * 210.00447 * 11 10 9 40 40 H 1.09001 * 109.47605 * 330.00404 * 11 10 9 41 41 H 1.09003 * 109.47209 * 209.99681 * 12 10 9 42 42 H 1.08997 * 109.47182 * 329.99743 * 12 10 9 43 43 H 0.97002 * 119.99755 * 180.02562 * 16 15 13 44 44 H 1.07994 * 120.03959 * 179.70757 * 21 9 8 45 45 H 1.07995 * 119.96388 * 179.97438 * 22 21 9 46 46 H 1.09004 * 109.47024 * 187.98946 * 23 4 3 47 47 H 1.08997 * 109.47663 * 307.99174 * 23 4 3 48 48 H 1.09001 * 115.55249 * 29.09550 * 24 23 4 49 49 H 1.08999 * 117.50165 * 359.97438 * 25 24 23 50 50 H 1.08997 * 117.49595 * 145.02095 * 25 24 23 51 51 H 1.08998 * 117.50277 * 252.50973 * 26 25 24 52 52 H 1.09005 * 117.50184 * 107.49049 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5043 1.4441 0.1178 5 6 4.1342 1.0291 -1.1426 6 6 5.6076 0.8055 -0.9181 7 6 6.0666 -0.4445 -0.5450 8 6 7.4155 -0.6514 -0.3325 9 6 8.3126 0.3951 -0.5050 10 7 9.6781 0.1879 -0.2968 11 6 10.6222 1.2940 -0.4738 12 6 10.1663 -1.1356 0.0985 13 6 10.4889 -1.9408 -1.1339 14 1 10.3443 -1.5098 -2.1135 15 6 10.9676 -3.2279 -1.0107 16 7 11.1432 -3.7528 0.1823 17 14 11.3668 -4.2261 -2.5383 18 1 12.7840 -4.0007 -2.9205 19 1 11.1535 -5.6685 -2.2568 20 1 10.4804 -3.8027 -3.6519 21 6 7.8481 1.6494 -0.8797 22 6 6.4973 1.8508 -1.0853 23 6 3.9967 2.7609 0.5437 24 6 3.5576 3.0279 1.9848 25 6 2.6111 4.2051 2.2284 26 6 4.0766 4.3005 2.6573 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6071 1.9809 0.8431 33 1 1.7498 1.9304 -0.9304 34 1 3.9951 1.8080 -1.8922 35 1 3.6753 0.1037 -1.4908 36 1 5.3691 -1.2588 -0.4154 37 1 7.7728 -1.6266 -0.0368 38 1 10.7441 1.8224 0.4717 39 1 11.5860 0.9009 -0.7972 40 1 10.2390 1.9818 -1.2276 41 1 11.0647 -1.0251 0.7057 42 1 9.3978 -1.6486 0.6767 43 1 11.4803 -4.6582 0.2690 44 1 8.5424 2.4663 -1.0101 45 1 6.1354 2.8258 -1.3762 46 1 5.0851 2.7778 0.4865 47 1 3.5866 3.5310 -0.1096 48 1 3.4326 2.1436 2.6097 49 1 2.3016 4.7897 1.3620 50 1 1.8631 4.0953 3.0135 51 1 4.2928 4.2534 3.7246 52 1 4.7310 4.9475 2.0730 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000154696699.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:30 Heat of formation + Delta-G solvation = 38.623492 kcal Electronic energy + Delta-G solvation = -26494.745628 eV Core-core repulsion = 23073.052505 eV Total energy + Delta-G solvation = -3421.693123 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.65227 -39.39720 -37.59746 -36.75527 -34.80755 -33.96972 -31.90378 -31.38545 -29.65939 -28.30795 -27.59997 -26.18666 -24.53014 -23.41654 -23.12754 -22.98158 -21.83430 -21.09176 -20.89873 -18.63326 -18.13386 -17.10550 -16.92222 -16.51687 -16.16141 -16.10929 -15.63637 -15.39373 -15.28658 -15.03888 -14.73453 -14.52616 -14.29655 -14.07669 -13.98521 -13.62072 -13.22111 -13.19358 -13.11896 -12.96477 -12.78226 -12.66686 -12.54323 -12.52024 -12.32834 -12.29637 -12.09880 -11.86512 -11.76463 -11.70510 -11.46791 -11.36976 -11.09179 -10.72540 -10.64111 -10.36313 -9.63473 -9.14042 -8.35578 -7.78537 -6.37403 0.72055 0.85529 1.36614 1.37914 1.49090 2.34460 2.64530 2.85143 3.00382 3.06341 3.33907 3.87669 4.01122 4.06506 4.11428 4.15488 4.18232 4.23100 4.32858 4.42387 4.44924 4.46479 4.55024 4.65435 4.69308 4.72429 4.76266 4.80050 4.81793 4.85798 4.90897 4.92051 4.98413 5.01610 5.04711 5.09467 5.13337 5.21574 5.27347 5.29544 5.33157 5.35950 5.40327 5.49820 5.60106 5.67830 5.70707 5.94566 6.07537 6.19374 6.27439 6.33377 6.50982 6.83238 6.95104 7.34529 8.83581 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014797 B = 0.002952 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.759529 B = 9482.104500 C =10626.608158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.120 4.120 3 C 0.059 3.941 4 N -0.543 5.543 5 C 0.113 3.887 6 C -0.152 4.152 7 C -0.055 4.055 8 C -0.216 4.216 9 C 0.213 3.787 10 N -0.633 5.633 11 C 0.098 3.902 12 C 0.267 3.733 13 C -0.541 4.541 14 H 0.049 0.951 15 C 0.012 3.988 16 N -0.927 5.927 17 Si 0.962 3.038 18 H -0.270 1.270 19 H -0.279 1.279 20 H -0.272 1.272 21 C -0.216 4.216 22 C -0.061 4.061 23 C 0.085 3.915 24 C -0.152 4.152 25 C -0.172 4.172 26 C -0.181 4.181 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.079 0.921 33 H 0.036 0.964 34 H 0.046 0.954 35 H 0.081 0.919 36 H 0.119 0.881 37 H 0.093 0.907 38 H 0.051 0.949 39 H 0.056 0.944 40 H 0.078 0.922 41 H 0.008 0.992 42 H 0.010 0.990 43 H 0.267 0.733 44 H 0.133 0.867 45 H 0.138 0.862 46 H 0.074 0.926 47 H 0.039 0.961 48 H 0.096 0.904 49 H 0.098 0.902 50 H 0.099 0.901 51 H 0.095 0.905 52 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.216 15.706 -0.161 24.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.158 4.158 3 C -0.068 4.068 4 N -0.267 5.267 5 C -0.013 4.013 6 C -0.154 4.154 7 C -0.075 4.075 8 C -0.239 4.239 9 C 0.109 3.891 10 N -0.341 5.341 11 C -0.044 4.044 12 C 0.146 3.854 13 C -0.580 4.580 14 H 0.067 0.933 15 C -0.187 4.187 16 N -0.567 5.567 17 Si 0.787 3.213 18 H -0.195 1.195 19 H -0.204 1.204 20 H -0.196 1.196 21 C -0.239 4.239 22 C -0.080 4.080 23 C -0.042 4.042 24 C -0.171 4.171 25 C -0.209 4.209 26 C -0.219 4.219 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.098 0.902 33 H 0.055 0.945 34 H 0.064 0.936 35 H 0.099 0.901 36 H 0.137 0.863 37 H 0.111 0.889 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.097 0.903 41 H 0.026 0.974 42 H 0.027 0.973 43 H 0.076 0.924 44 H 0.150 0.850 45 H 0.155 0.845 46 H 0.092 0.908 47 H 0.057 0.943 48 H 0.114 0.886 49 H 0.116 0.884 50 H 0.117 0.883 51 H 0.114 0.886 52 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -18.801 15.183 0.325 24.169 hybrid contribution 0.651 -0.630 -0.929 1.298 sum -18.150 14.554 -0.604 23.272 Atomic orbital electron populations 1.21698 0.94594 1.02006 1.02070 1.21503 0.96107 0.96296 1.01856 1.22162 0.86574 0.97316 1.00755 1.61941 1.06046 1.27942 1.30769 1.20818 0.89935 1.00629 0.89960 1.19462 0.95359 0.93337 1.07286 1.20747 0.93369 0.97316 0.96026 1.20770 0.94170 0.98381 1.10572 1.18191 0.83884 0.94218 0.92841 1.46954 1.03393 1.10981 1.72730 1.21594 0.92814 0.89131 1.00907 1.18753 0.93106 0.79362 0.94223 1.21778 1.43629 0.99139 0.93458 0.93253 1.25794 0.95181 0.98590 0.99159 1.70041 1.46401 1.16251 1.23988 0.85492 0.78758 0.77726 0.79337 1.19549 1.20411 1.19623 1.20753 0.96900 0.95396 1.10804 1.20857 0.91692 0.98437 0.97038 1.21701 1.00370 0.88894 0.93266 1.22189 1.05064 0.92827 0.97025 1.23099 0.92958 1.01180 1.03642 1.23000 0.97439 1.00244 1.01199 0.92345 0.92415 0.92341 0.92588 0.92489 0.90228 0.94542 0.93598 0.90097 0.86260 0.88854 0.93035 0.92533 0.90304 0.97367 0.97254 0.92385 0.84974 0.84475 0.90817 0.94268 0.88620 0.88359 0.88261 0.88618 0.88581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.91 71.98 0.71 -1.27 16 2 C -0.12 -2.09 5.94 30.59 0.18 -1.91 16 3 C 0.06 1.05 4.84 86.30 0.42 1.47 16 4 N -0.54 -11.88 4.42 -900.82 -3.99 -15.87 16 5 C 0.11 2.63 4.95 85.56 0.42 3.05 16 6 C -0.15 -4.48 4.92 -19.84 -0.10 -4.57 16 7 C -0.06 -1.96 9.69 22.25 0.22 -1.75 16 8 C -0.22 -9.31 9.21 22.40 0.21 -9.11 16 9 C 0.21 8.87 6.55 38.21 0.25 9.12 16 10 N -0.63 -28.24 2.99 -726.57 -2.17 -30.41 16 11 C 0.10 3.47 10.19 127.77 1.30 4.78 16 12 C 0.27 14.33 4.92 85.63 0.42 14.75 16 13 C -0.54 -30.87 9.39 25.60 0.24 -30.63 16 14 H 0.05 2.85 7.81 -2.91 -0.02 2.82 16 15 C 0.01 0.68 5.46 84.66 0.46 1.14 16 16 N -0.93 -55.12 13.29 21.45 0.28 -54.84 16 17 Si 0.96 44.53 29.54 68.60 2.03 46.55 16 18 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 19 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 20 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 21 C -0.22 -7.19 9.21 22.40 0.21 -6.99 16 22 C -0.06 -1.74 7.84 22.25 0.17 -1.57 16 23 C 0.09 1.75 5.04 86.31 0.44 2.19 16 24 C -0.15 -2.92 4.76 -10.79 -0.05 -2.97 16 25 C -0.17 -2.53 9.99 30.59 0.31 -2.22 16 26 C -0.18 -3.04 10.25 30.59 0.31 -2.73 16 27 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.06 1.03 6.87 -2.39 -0.02 1.01 16 31 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.08 1.34 6.80 -2.38 -0.02 1.33 16 33 H 0.04 0.60 8.02 -2.39 -0.02 0.58 16 34 H 0.05 0.95 8.06 -2.39 -0.02 0.93 16 35 H 0.08 1.83 6.55 -2.39 -0.02 1.81 16 36 H 0.12 3.89 8.06 -2.91 -0.02 3.87 16 37 H 0.09 4.64 6.14 -2.91 -0.02 4.63 16 38 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 39 H 0.06 2.07 8.07 -2.39 -0.02 2.05 16 40 H 0.08 2.35 6.20 -2.39 -0.01 2.33 16 41 H 0.01 0.47 8.07 -2.39 -0.02 0.45 16 42 H 0.01 0.55 6.19 -2.39 -0.01 0.54 16 43 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 44 H 0.13 3.80 6.14 -2.91 -0.02 3.79 16 45 H 0.14 3.03 7.82 -2.91 -0.02 3.00 16 46 H 0.07 1.75 5.35 -2.39 -0.01 1.74 16 47 H 0.04 0.72 7.83 -2.39 -0.02 0.70 16 48 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 49 H 0.10 1.29 8.03 -2.39 -0.02 1.27 16 50 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 51 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 52 H 0.10 1.54 8.14 -2.38 -0.02 1.52 16 Total: -1.00 -63.43 408.23 3.14 -60.29 By element: Atomic # 1 Polarization: 22.64 SS G_CDS: 0.87 Total: 23.50 kcal Atomic # 6 Polarization: -35.35 SS G_CDS: 6.12 Total: -29.23 kcal Atomic # 7 Polarization: -95.24 SS G_CDS: -5.87 Total: -101.12 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.55 kcal Total: -63.43 3.14 -60.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154696699.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.914 kcal (2) G-P(sol) polarization free energy of solvation -63.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds