Wall clock time and date at job start Tue Mar 31 2020 11:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46960 * 110.99618 * 2 1 4 4 C 1.53050 * 109.36298 * 183.18435 * 3 2 1 5 5 N 1.46957 * 109.36782 * 301.59873 * 4 3 2 6 6 C 1.46899 * 111.00384 * 183.18743 * 5 4 3 7 7 C 1.52992 * 109.47085 * 84.10908 * 6 5 4 8 8 C 1.53005 * 109.46897 * 294.50089 * 7 6 5 9 9 C 1.52999 * 109.47431 * 54.50081 * 7 6 5 10 10 C 1.52998 * 109.47284 * 174.50347 * 7 6 5 11 11 C 1.50700 * 109.47439 * 179.97438 * 10 7 6 12 12 H 1.07999 * 119.99905 * 359.97438 * 11 10 7 13 13 C 1.37880 * 120.00206 * 179.97438 * 11 10 7 14 14 N 1.31517 * 119.99492 * 0.02562 * 13 11 10 15 15 Si 1.86793 * 120.00141 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47263 * 59.99663 * 15 13 11 17 17 H 1.48501 * 109.47073 * 180.02562 * 15 13 11 18 18 H 1.48507 * 109.46919 * 300.00116 * 15 13 11 19 19 C 1.46967 * 110.87782 * 59.31857 * 5 4 3 20 20 H 1.08993 * 109.48924 * 60.64857 * 19 5 4 21 21 C 1.50703 * 109.48788 * 180.71582 * 19 5 4 22 22 C 1.38240 * 119.99843 * 39.72670 * 21 19 5 23 23 C 1.38232 * 119.99636 * 179.79033 * 22 21 19 24 24 C 1.38240 * 120.00282 * 0.46044 * 23 22 21 25 25 C 1.38234 * 119.99430 * 359.76958 * 24 23 22 26 26 C 1.38232 * 119.99814 * 220.00302 * 21 19 5 27 27 C 1.46961 * 110.99645 * 123.79491 * 2 1 3 28 28 H 1.09010 * 109.46827 * 63.95656 * 1 2 3 29 29 H 1.08999 * 109.46648 * 183.95057 * 1 2 3 30 30 H 1.08993 * 109.47379 * 303.95683 * 1 2 3 31 31 H 1.09003 * 109.48981 * 63.22034 * 3 2 1 32 32 H 1.08993 * 109.49139 * 303.15086 * 3 2 1 33 33 H 1.08996 * 109.49542 * 181.63166 * 4 3 2 34 34 H 1.09003 * 109.48765 * 61.56583 * 4 3 2 35 35 H 1.08997 * 109.47151 * 324.10274 * 6 5 4 36 36 H 1.09004 * 109.47230 * 204.11035 * 6 5 4 37 37 H 1.08996 * 109.47214 * 75.50955 * 8 7 6 38 38 H 1.09002 * 109.46894 * 195.50639 * 8 7 6 39 39 H 1.08998 * 109.47108 * 315.50522 * 8 7 6 40 40 H 1.09004 * 109.46512 * 60.00445 * 9 7 6 41 41 H 1.09001 * 109.46968 * 179.97438 * 9 7 6 42 42 H 1.08999 * 109.47317 * 300.00051 * 9 7 6 43 43 H 1.09004 * 109.47492 * 300.00065 * 10 7 6 44 44 H 1.09005 * 109.47255 * 59.99631 * 10 7 6 45 45 H 0.96999 * 119.99208 * 180.02562 * 14 13 11 46 46 H 1.07998 * 119.99945 * 359.97438 * 22 21 19 47 47 H 1.07998 * 120.00330 * 180.25350 * 23 22 21 48 48 H 1.07997 * 120.00265 * 179.79497 * 24 23 22 49 49 H 1.08000 * 119.99723 * 180.02562 * 25 24 23 50 50 H 1.08002 * 120.00268 * 359.97153 * 26 21 19 51 51 H 1.08994 * 109.49066 * 296.78215 * 27 2 1 52 52 H 1.08992 * 109.48421 * 56.85148 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5234 1.3292 -0.0802 5 7 4.0501 0.5661 1.0599 6 6 5.5190 0.5661 1.0600 7 6 6.0289 1.8408 1.7351 8 6 5.6349 3.0563 0.8935 9 6 5.4091 1.9629 3.1286 10 6 7.5527 1.7782 1.8584 11 6 8.0550 3.0340 2.5228 12 1 7.3573 3.8004 2.8265 13 6 9.4054 3.2046 2.7432 14 7 10.2550 2.2715 2.3730 15 14 10.0279 4.7610 3.5674 16 1 9.4260 4.8797 4.9197 17 1 11.5069 4.7001 3.6869 18 1 9.6459 5.9406 2.7502 19 6 3.5234 -0.8060 1.0599 20 1 3.8253 -1.3114 0.1426 21 6 4.0685 -1.5538 2.2493 22 6 4.1884 -0.9170 3.4705 23 6 4.6844 -1.6042 4.5625 24 6 5.0695 -2.9254 4.4312 25 6 4.9540 -3.5606 3.2090 26 6 4.4541 -2.8747 2.1179 27 6 1.9956 -0.7632 1.1402 28 1 -0.3633 0.4512 -0.9234 29 1 -0.3632 -1.0252 0.0708 30 1 -0.3634 0.5740 0.8523 31 1 1.6936 1.8774 0.9174 32 1 1.6013 1.9129 -0.8602 33 1 3.9178 2.3449 -0.0511 34 1 3.8253 0.8480 -1.0105 35 1 5.8824 0.5285 0.0331 36 1 5.8824 -0.3046 1.6060 37 1 4.5735 3.2634 1.0290 38 1 6.2173 3.9216 1.2100 39 1 5.8334 2.8497 -0.1582 40 1 5.6900 1.0969 3.7282 41 1 5.7728 2.8708 3.6098 42 1 4.3236 2.0075 3.0409 43 1 7.8335 0.9122 2.4580 44 1 7.9943 1.6912 0.8656 45 1 11.2049 2.3914 2.5283 46 1 3.8917 0.1165 3.5719 47 1 4.7742 -1.1080 5.5176 48 1 5.4600 -3.4613 5.2836 49 1 5.2545 -4.5929 3.1064 50 1 4.3642 -3.3710 1.1629 51 1 1.6936 -0.2820 2.0704 52 1 1.6013 -1.7788 1.1110 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155205740.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:57 Heat of formation + Delta-G solvation = 36.912454 kcal Electronic energy + Delta-G solvation = -28412.587639 eV Core-core repulsion = 24990.820319 eV Total energy + Delta-G solvation = -3421.767319 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.22228 -38.31975 -36.99007 -34.48453 -32.58485 -31.92172 -30.72424 -29.19567 -28.54545 -26.91375 -26.43124 -25.33352 -23.94694 -23.28016 -22.38274 -22.16419 -20.98557 -19.43444 -17.90073 -16.78052 -16.19705 -15.81042 -15.45788 -15.30373 -15.04101 -14.67338 -14.36262 -14.30473 -14.06093 -13.83464 -13.31927 -13.08858 -12.79330 -12.74174 -12.59265 -12.39291 -12.18230 -11.98969 -11.90337 -11.64425 -11.52680 -11.24313 -11.03058 -10.86423 -10.81230 -10.72184 -10.54991 -10.47969 -10.27230 -10.23182 -9.88008 -9.57274 -8.93702 -8.83177 -8.68531 -8.48029 -8.43489 -8.27521 -7.93359 -5.92340 -3.92174 1.51294 1.63152 3.36385 3.41180 3.43187 3.80922 3.97164 4.15595 4.52027 4.82024 4.94919 5.05432 5.09911 5.17119 5.19417 5.28440 5.35396 5.38621 5.43270 5.49802 5.51912 5.63591 5.68500 5.73931 5.74660 5.77988 5.88921 5.91779 6.02791 6.09237 6.12672 6.16162 6.26534 6.34453 6.40458 6.58749 6.62748 6.70526 6.75102 6.79524 6.84609 6.89352 6.92334 6.93267 7.18751 7.26800 7.29481 7.34106 7.45485 7.53247 7.76317 7.92130 8.08416 8.52843 9.13081 9.70083 11.19269 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012700 B = 0.004436 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2204.113082 B = 6310.696955 C = 7853.357327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.547 5.547 3 C 0.057 3.943 4 C 0.039 3.961 5 N -0.524 5.524 6 C 0.064 3.936 7 C -0.048 4.048 8 C -0.135 4.135 9 C -0.116 4.116 10 C 0.035 3.965 11 C -0.505 4.505 12 H 0.058 0.942 13 C 0.055 3.945 14 N -0.897 5.897 15 Si 0.886 3.114 16 H -0.278 1.278 17 H -0.289 1.289 18 H -0.278 1.278 19 C 0.127 3.873 20 H 0.051 0.949 21 C -0.079 4.079 22 C -0.086 4.086 23 C -0.123 4.123 24 C -0.121 4.121 25 C -0.127 4.127 26 C -0.116 4.116 27 C 0.070 3.930 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.025 0.975 31 H 0.042 0.958 32 H 0.075 0.925 33 H 0.105 0.895 34 H 0.036 0.964 35 H 0.030 0.970 36 H 0.070 0.930 37 H 0.042 0.958 38 H 0.066 0.934 39 H 0.036 0.964 40 H 0.041 0.959 41 H 0.051 0.949 42 H 0.043 0.957 43 H 0.013 0.987 44 H 0.011 0.989 45 H 0.259 0.741 46 H 0.138 0.862 47 H 0.119 0.881 48 H 0.116 0.884 49 H 0.117 0.883 50 H 0.116 0.884 51 H 0.043 0.957 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.061 -8.307 -1.824 19.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.271 5.271 3 C -0.071 4.071 4 C -0.089 4.089 5 N -0.248 5.248 6 C -0.063 4.063 7 C -0.049 4.049 8 C -0.191 4.191 9 C -0.173 4.173 10 C -0.002 4.002 11 C -0.544 4.544 12 H 0.076 0.924 13 C -0.145 4.145 14 N -0.537 5.537 15 Si 0.714 3.286 16 H -0.204 1.204 17 H -0.215 1.215 18 H -0.204 1.204 19 C 0.018 3.982 20 H 0.069 0.931 21 C -0.080 4.080 22 C -0.104 4.104 23 C -0.142 4.142 24 C -0.139 4.139 25 C -0.145 4.145 26 C -0.135 4.135 27 C -0.058 4.058 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.043 0.957 31 H 0.060 0.940 32 H 0.093 0.907 33 H 0.123 0.877 34 H 0.054 0.946 35 H 0.049 0.951 36 H 0.089 0.911 37 H 0.061 0.939 38 H 0.085 0.915 39 H 0.055 0.945 40 H 0.060 0.940 41 H 0.070 0.930 42 H 0.062 0.938 43 H 0.032 0.968 44 H 0.029 0.971 45 H 0.068 0.932 46 H 0.155 0.845 47 H 0.137 0.863 48 H 0.134 0.866 49 H 0.135 0.865 50 H 0.134 0.866 51 H 0.061 0.939 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -17.883 -8.342 -1.847 19.819 hybrid contribution 0.634 0.715 0.395 1.034 sum -17.249 -7.627 -1.452 18.916 Atomic orbital electron populations 1.22325 0.87498 1.01643 1.00718 1.62165 1.07499 1.14465 1.42968 1.22212 0.95388 0.88764 1.00739 1.22682 0.93421 1.00959 0.91849 1.62199 1.09205 1.11273 1.42116 1.22381 0.84654 1.00267 0.99003 1.20513 0.98198 0.91733 0.94436 1.22041 0.99014 0.99808 0.98286 1.21724 0.98243 1.01091 0.96258 1.19098 0.87492 0.97000 0.96644 1.21191 0.91619 1.03416 1.38131 0.92373 1.25004 0.97218 0.96228 0.96067 1.69964 1.02362 1.33502 1.47877 0.86755 0.77620 0.84084 0.80099 1.20361 1.21487 1.20391 1.20518 0.93403 0.89553 0.94718 0.93075 1.19653 0.99780 0.93683 0.94897 1.21314 0.97076 1.00401 0.91573 1.21199 0.99373 0.94567 0.99013 1.21121 1.00045 0.95269 0.97454 1.21007 1.00594 0.99726 0.93138 1.20978 0.99628 0.94256 0.98615 1.22137 0.93714 0.98040 0.91913 0.91473 0.91645 0.95662 0.93979 0.90699 0.87700 0.94596 0.95138 0.91139 0.93915 0.91492 0.94518 0.93952 0.92982 0.93839 0.96836 0.97105 0.93174 0.84459 0.86260 0.86559 0.86523 0.86603 0.93859 0.90745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.63 60.07 0.58 0.82 16 2 N -0.55 -6.29 4.97 -242.75 -1.21 -7.50 16 3 C 0.06 0.67 5.62 -3.77 -0.02 0.64 16 4 C 0.04 0.52 5.11 -3.77 -0.02 0.50 16 5 N -0.52 -7.66 2.72 -227.88 -0.62 -8.28 16 6 C 0.06 1.13 3.69 -3.83 -0.01 1.11 16 7 C -0.05 -0.95 0.61 -154.51 -0.09 -1.05 16 8 C -0.13 -2.49 6.88 37.16 0.26 -2.24 16 9 C -0.12 -2.19 6.64 37.16 0.25 -1.95 16 10 C 0.04 0.89 4.04 -27.88 -0.11 0.78 16 11 C -0.51 -13.79 7.43 -34.44 -0.26 -14.05 16 12 H 0.06 1.54 5.80 -52.49 -0.30 1.24 16 13 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 14 N -0.90 -26.97 13.29 55.43 0.74 -26.24 16 15 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 17 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 C 0.13 1.71 2.16 -68.80 -0.15 1.56 16 20 H 0.05 0.73 8.00 -51.93 -0.42 0.32 16 21 C -0.08 -1.09 3.35 -104.62 -0.35 -1.44 16 22 C -0.09 -1.23 7.23 -39.58 -0.29 -1.51 16 23 C -0.12 -1.68 10.05 -39.58 -0.40 -2.08 16 24 C -0.12 -1.52 10.05 -39.58 -0.40 -1.92 16 25 C -0.13 -1.56 10.05 -39.58 -0.40 -1.95 16 26 C -0.12 -1.49 9.67 -39.58 -0.38 -1.88 16 27 C 0.07 0.84 4.88 -3.76 -0.02 0.82 16 28 H 0.07 0.55 8.14 -51.92 -0.42 0.12 16 29 H 0.06 0.54 8.07 -51.93 -0.42 0.12 16 30 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.11 1.46 3.94 -51.93 -0.20 1.25 16 34 H 0.04 0.51 8.12 -51.93 -0.42 0.09 16 35 H 0.03 0.56 7.77 -51.93 -0.40 0.16 16 36 H 0.07 1.33 6.04 -51.93 -0.31 1.02 16 37 H 0.04 0.69 6.17 -51.93 -0.32 0.37 16 38 H 0.07 1.38 6.27 -51.93 -0.33 1.06 16 39 H 0.04 0.65 7.63 -51.93 -0.40 0.25 16 40 H 0.04 0.81 6.67 -51.93 -0.35 0.46 16 41 H 0.05 1.07 6.62 -51.93 -0.34 0.72 16 42 H 0.04 0.74 6.65 -51.93 -0.35 0.39 16 43 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 46 H 0.14 2.06 5.28 -52.49 -0.28 1.78 16 47 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 48 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 49 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 50 H 0.12 1.30 8.04 -52.49 -0.42 0.88 16 51 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 52 H 0.07 0.82 8.09 -51.93 -0.42 0.40 16 LS Contribution 382.98 15.07 5.77 5.77 Total: -1.00 -29.40 382.98 -11.29 -40.69 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -9.04 Total: 1.27 kcal Atomic # 6 Polarization: -20.44 SS G_CDS: -1.91 Total: -22.35 kcal Atomic # 7 Polarization: -40.92 SS G_CDS: -1.09 Total: -42.01 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -29.40 -11.29 -40.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155205740.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.605 kcal (2) G-P(sol) polarization free energy of solvation -29.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds