Wall clock time and date at job start Tue Mar 31 2020 11:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46960 * 110.99618 * 2 1 4 4 C 1.53050 * 109.36298 * 183.18435 * 3 2 1 5 5 N 1.46957 * 109.36782 * 301.59873 * 4 3 2 6 6 C 1.46899 * 111.00384 * 183.18743 * 5 4 3 7 7 C 1.52992 * 109.47085 * 84.10908 * 6 5 4 8 8 C 1.53005 * 109.46897 * 294.50089 * 7 6 5 9 9 C 1.52999 * 109.47431 * 54.50081 * 7 6 5 10 10 C 1.52998 * 109.47284 * 174.50347 * 7 6 5 11 11 C 1.50700 * 109.47439 * 179.97438 * 10 7 6 12 12 H 1.07999 * 119.99905 * 359.97438 * 11 10 7 13 13 C 1.37880 * 120.00206 * 179.97438 * 11 10 7 14 14 N 1.31517 * 119.99492 * 0.02562 * 13 11 10 15 15 Si 1.86793 * 120.00141 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47263 * 59.99663 * 15 13 11 17 17 H 1.48501 * 109.47073 * 180.02562 * 15 13 11 18 18 H 1.48507 * 109.46919 * 300.00116 * 15 13 11 19 19 C 1.46967 * 110.87782 * 59.31857 * 5 4 3 20 20 H 1.08993 * 109.48924 * 60.64857 * 19 5 4 21 21 C 1.50703 * 109.48788 * 180.71582 * 19 5 4 22 22 C 1.38240 * 119.99843 * 39.72670 * 21 19 5 23 23 C 1.38232 * 119.99636 * 179.79033 * 22 21 19 24 24 C 1.38240 * 120.00282 * 0.46044 * 23 22 21 25 25 C 1.38234 * 119.99430 * 359.76958 * 24 23 22 26 26 C 1.38232 * 119.99814 * 220.00302 * 21 19 5 27 27 C 1.46961 * 110.99645 * 123.79491 * 2 1 3 28 28 H 1.09010 * 109.46827 * 63.95656 * 1 2 3 29 29 H 1.08999 * 109.46648 * 183.95057 * 1 2 3 30 30 H 1.08993 * 109.47379 * 303.95683 * 1 2 3 31 31 H 1.09003 * 109.48981 * 63.22034 * 3 2 1 32 32 H 1.08993 * 109.49139 * 303.15086 * 3 2 1 33 33 H 1.08996 * 109.49542 * 181.63166 * 4 3 2 34 34 H 1.09003 * 109.48765 * 61.56583 * 4 3 2 35 35 H 1.08997 * 109.47151 * 324.10274 * 6 5 4 36 36 H 1.09004 * 109.47230 * 204.11035 * 6 5 4 37 37 H 1.08996 * 109.47214 * 75.50955 * 8 7 6 38 38 H 1.09002 * 109.46894 * 195.50639 * 8 7 6 39 39 H 1.08998 * 109.47108 * 315.50522 * 8 7 6 40 40 H 1.09004 * 109.46512 * 60.00445 * 9 7 6 41 41 H 1.09001 * 109.46968 * 179.97438 * 9 7 6 42 42 H 1.08999 * 109.47317 * 300.00051 * 9 7 6 43 43 H 1.09004 * 109.47492 * 300.00065 * 10 7 6 44 44 H 1.09005 * 109.47255 * 59.99631 * 10 7 6 45 45 H 0.96999 * 119.99208 * 180.02562 * 14 13 11 46 46 H 1.07998 * 119.99945 * 359.97438 * 22 21 19 47 47 H 1.07998 * 120.00330 * 180.25350 * 23 22 21 48 48 H 1.07997 * 120.00265 * 179.79497 * 24 23 22 49 49 H 1.08000 * 119.99723 * 180.02562 * 25 24 23 50 50 H 1.08002 * 120.00268 * 359.97153 * 26 21 19 51 51 H 1.08994 * 109.49066 * 296.78215 * 27 2 1 52 52 H 1.08992 * 109.48421 * 56.85148 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5234 1.3292 -0.0802 5 7 4.0501 0.5661 1.0599 6 6 5.5190 0.5661 1.0600 7 6 6.0289 1.8408 1.7351 8 6 5.6349 3.0563 0.8935 9 6 5.4091 1.9629 3.1286 10 6 7.5527 1.7782 1.8584 11 6 8.0550 3.0340 2.5228 12 1 7.3573 3.8004 2.8265 13 6 9.4054 3.2046 2.7432 14 7 10.2550 2.2715 2.3730 15 14 10.0279 4.7610 3.5674 16 1 9.4260 4.8797 4.9197 17 1 11.5069 4.7001 3.6869 18 1 9.6459 5.9406 2.7502 19 6 3.5234 -0.8060 1.0599 20 1 3.8253 -1.3114 0.1426 21 6 4.0685 -1.5538 2.2493 22 6 4.1884 -0.9170 3.4705 23 6 4.6844 -1.6042 4.5625 24 6 5.0695 -2.9254 4.4312 25 6 4.9540 -3.5606 3.2090 26 6 4.4541 -2.8747 2.1179 27 6 1.9956 -0.7632 1.1402 28 1 -0.3633 0.4512 -0.9234 29 1 -0.3632 -1.0252 0.0708 30 1 -0.3634 0.5740 0.8523 31 1 1.6936 1.8774 0.9174 32 1 1.6013 1.9129 -0.8602 33 1 3.9178 2.3449 -0.0511 34 1 3.8253 0.8480 -1.0105 35 1 5.8824 0.5285 0.0331 36 1 5.8824 -0.3046 1.6060 37 1 4.5735 3.2634 1.0290 38 1 6.2173 3.9216 1.2100 39 1 5.8334 2.8497 -0.1582 40 1 5.6900 1.0969 3.7282 41 1 5.7728 2.8708 3.6098 42 1 4.3236 2.0075 3.0409 43 1 7.8335 0.9122 2.4580 44 1 7.9943 1.6912 0.8656 45 1 11.2049 2.3914 2.5283 46 1 3.8917 0.1165 3.5719 47 1 4.7742 -1.1080 5.5176 48 1 5.4600 -3.4613 5.2836 49 1 5.2545 -4.5929 3.1064 50 1 4.3642 -3.3710 1.1629 51 1 1.6936 -0.2820 2.0704 52 1 1.6013 -1.7788 1.1110 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155205740.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:56 Heat of formation + Delta-G solvation = 21.380755 kcal Electronic energy + Delta-G solvation = -28413.261144 eV Core-core repulsion = 24990.820319 eV Total energy + Delta-G solvation = -3422.440824 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.34059 -39.35890 -38.39074 -35.80312 -34.32860 -33.28462 -31.74517 -30.26269 -29.69873 -28.80089 -27.95491 -26.65657 -25.10955 -24.65329 -23.71953 -23.34368 -21.98852 -20.49345 -19.55945 -18.32848 -17.80278 -16.92922 -16.60461 -16.45181 -16.27258 -16.01391 -15.73693 -15.32059 -15.26332 -15.06691 -14.71485 -14.33733 -14.14153 -14.07606 -13.85439 -13.75841 -13.56635 -13.36394 -12.97543 -12.78293 -12.70959 -12.65198 -12.59734 -12.32789 -12.26535 -12.20485 -12.01955 -11.92124 -11.76152 -11.61820 -11.42176 -11.23770 -10.83821 -10.61098 -10.48022 -9.71365 -9.52137 -9.35493 -9.15996 -8.11850 -6.18720 0.49169 0.60724 1.41184 1.43411 1.50639 2.44623 2.84292 2.94287 3.07025 3.21870 3.80066 3.97295 4.02152 4.09740 4.19665 4.25029 4.27117 4.28793 4.37502 4.41866 4.44666 4.46520 4.63423 4.67805 4.68850 4.75685 4.76770 4.82355 4.88943 4.92288 4.98527 5.00734 5.04207 5.09290 5.11741 5.16232 5.24106 5.25903 5.30561 5.54305 5.57075 5.61955 5.64400 5.69282 5.71726 5.74823 5.90236 5.95762 6.01839 6.03658 6.18619 6.21953 6.29704 6.39702 6.96043 7.48232 9.00365 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012700 B = 0.004436 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2204.113082 B = 6310.696955 C = 7853.357327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.556 5.556 3 C 0.063 3.937 4 C 0.038 3.962 5 N -0.519 5.519 6 C 0.080 3.920 7 C -0.043 4.043 8 C -0.126 4.126 9 C -0.102 4.102 10 C 0.045 3.955 11 C -0.511 4.511 12 H 0.066 0.934 13 C -0.003 4.003 14 N -0.938 5.938 15 Si 0.954 3.046 16 H -0.268 1.268 17 H -0.289 1.289 18 H -0.267 1.267 19 C 0.131 3.869 20 H 0.043 0.957 21 C -0.089 4.089 22 C -0.100 4.100 23 C -0.139 4.139 24 C -0.128 4.128 25 C -0.129 4.129 26 C -0.125 4.125 27 C 0.079 3.921 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.027 0.973 31 H 0.040 0.960 32 H 0.093 0.907 33 H 0.102 0.898 34 H 0.029 0.971 35 H 0.019 0.981 36 H 0.054 0.946 37 H 0.071 0.929 38 H 0.044 0.956 39 H 0.039 0.961 40 H 0.033 0.967 41 H 0.034 0.966 42 H 0.066 0.934 43 H -0.021 1.021 44 H -0.021 1.021 45 H 0.259 0.741 46 H 0.128 0.872 47 H 0.127 0.873 48 H 0.137 0.863 49 H 0.141 0.859 50 H 0.131 0.869 51 H 0.037 0.963 52 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.120 -8.030 -1.740 21.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.281 5.281 3 C -0.065 4.065 4 C -0.090 4.090 5 N -0.244 5.244 6 C -0.047 4.047 7 C -0.044 4.044 8 C -0.182 4.182 9 C -0.159 4.159 10 C 0.007 3.993 11 C -0.549 4.549 12 H 0.084 0.916 13 C -0.200 4.200 14 N -0.580 5.580 15 Si 0.780 3.220 16 H -0.193 1.193 17 H -0.214 1.214 18 H -0.192 1.192 19 C 0.022 3.978 20 H 0.061 0.939 21 C -0.090 4.090 22 C -0.118 4.118 23 C -0.157 4.157 24 C -0.146 4.146 25 C -0.147 4.147 26 C -0.143 4.143 27 C -0.050 4.050 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.046 0.954 31 H 0.058 0.942 32 H 0.111 0.889 33 H 0.120 0.880 34 H 0.048 0.952 35 H 0.037 0.963 36 H 0.072 0.928 37 H 0.090 0.910 38 H 0.063 0.937 39 H 0.058 0.942 40 H 0.052 0.948 41 H 0.053 0.947 42 H 0.085 0.915 43 H -0.003 1.003 44 H -0.003 1.003 45 H 0.067 0.933 46 H 0.146 0.854 47 H 0.145 0.855 48 H 0.155 0.845 49 H 0.159 0.841 50 H 0.148 0.852 51 H 0.055 0.945 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -19.976 -8.058 -1.765 21.612 hybrid contribution 1.263 0.548 0.342 1.419 sum -18.713 -7.510 -1.423 20.214 Atomic orbital electron populations 1.22380 0.85725 1.02508 1.01434 1.62181 1.09112 1.14190 1.42595 1.22163 0.93665 0.89196 1.01473 1.22707 0.95024 1.00296 0.90960 1.62140 1.06871 1.12511 1.42836 1.22017 0.86888 0.98241 0.97596 1.20359 0.94447 0.93730 0.95848 1.21948 1.00414 0.97876 0.98003 1.21586 0.99445 0.99773 0.95106 1.18950 0.91433 0.95063 0.93837 1.21559 0.91943 1.03967 1.37442 0.91567 1.25902 0.97646 0.99556 0.96866 1.70117 1.02603 1.35753 1.49480 0.85661 0.76852 0.80140 0.79381 1.19331 1.21443 1.19238 1.20525 0.94611 0.88424 0.94248 0.93871 1.19749 1.00215 0.94256 0.94766 1.21286 0.98094 1.00145 0.92250 1.21413 0.99656 0.95318 0.99273 1.21428 0.99647 0.95045 0.98472 1.21349 0.99748 1.00884 0.92742 1.21234 0.99417 0.94102 0.99595 1.22042 0.92241 0.98787 0.91895 0.90303 0.90710 0.95412 0.94180 0.88858 0.88038 0.95235 0.96310 0.92754 0.90997 0.93695 0.94206 0.94765 0.94664 0.91487 1.00289 1.00301 0.93251 0.85423 0.85546 0.84531 0.84112 0.85155 0.94468 0.89615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 9.63 127.69 1.23 1.65 16 2 N -0.56 -11.48 4.97 -921.94 -4.58 -16.06 16 3 C 0.06 1.32 5.62 86.31 0.48 1.81 16 4 C 0.04 0.96 5.11 86.31 0.44 1.40 16 5 N -0.52 -14.87 2.72 -874.87 -2.38 -17.24 16 6 C 0.08 2.89 3.69 86.30 0.32 3.21 16 7 C -0.04 -1.74 0.61 -52.18 -0.03 -1.77 16 8 C -0.13 -4.60 6.88 71.98 0.50 -4.10 16 9 C -0.10 -3.86 6.64 71.98 0.48 -3.38 16 10 C 0.04 2.36 4.04 29.85 0.12 2.49 16 11 C -0.51 -28.49 7.43 25.60 0.19 -28.30 16 12 H 0.07 3.53 5.80 -2.91 -0.02 3.51 16 13 C 0.00 -0.18 5.46 84.65 0.46 0.29 16 14 N -0.94 -58.07 13.29 21.45 0.28 -57.78 16 15 Si 0.95 44.74 29.54 68.60 2.03 46.77 16 16 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 17 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 18 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 19 C 0.13 3.41 2.16 44.17 0.10 3.51 16 20 H 0.04 1.21 8.00 -2.39 -0.02 1.19 16 21 C -0.09 -2.42 3.35 -19.86 -0.07 -2.48 16 22 C -0.10 -2.85 7.23 22.27 0.16 -2.69 16 23 C -0.14 -3.75 10.05 22.27 0.22 -3.52 16 24 C -0.13 -3.11 10.05 22.27 0.22 -2.88 16 25 C -0.13 -3.01 10.05 22.27 0.22 -2.78 16 26 C -0.13 -3.10 9.67 22.27 0.22 -2.89 16 27 C 0.08 1.74 4.88 86.31 0.42 2.16 16 28 H 0.08 1.03 8.14 -2.38 -0.02 1.02 16 29 H 0.07 1.01 8.07 -2.39 -0.02 0.99 16 30 H 0.03 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.10 2.65 3.94 -2.39 -0.01 2.64 16 34 H 0.03 0.80 8.12 -2.39 -0.02 0.78 16 35 H 0.02 0.71 7.77 -2.39 -0.02 0.69 16 36 H 0.05 2.13 6.04 -2.38 -0.01 2.12 16 37 H 0.07 2.21 6.17 -2.39 -0.01 2.19 16 38 H 0.04 1.84 6.27 -2.39 -0.01 1.82 16 39 H 0.04 1.40 7.63 -2.39 -0.02 1.39 16 40 H 0.03 1.33 6.67 -2.39 -0.02 1.31 16 41 H 0.03 1.43 6.62 -2.39 -0.02 1.41 16 42 H 0.07 2.21 6.65 -2.39 -0.02 2.19 16 43 H -0.02 -1.26 8.14 -2.39 -0.02 -1.28 16 44 H -0.02 -1.25 8.14 -2.38 -0.02 -1.27 16 45 H 0.26 15.22 8.31 -92.71 -0.77 14.44 16 46 H 0.13 3.82 5.28 -2.91 -0.02 3.80 16 47 H 0.13 3.10 8.06 -2.91 -0.02 3.07 16 48 H 0.14 2.67 8.06 -2.91 -0.02 2.64 16 49 H 0.14 2.52 8.06 -2.91 -0.02 2.49 16 50 H 0.13 2.77 8.04 -2.91 -0.02 2.74 16 51 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 52 H 0.09 1.71 8.09 -2.39 -0.02 1.69 16 Total: -1.00 -64.65 382.98 1.91 -62.74 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: 0.87 Total: 19.90 kcal Atomic # 6 Polarization: -44.00 SS G_CDS: 5.69 Total: -38.32 kcal Atomic # 7 Polarization: -84.42 SS G_CDS: -6.67 Total: -91.09 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -64.65 1.91 -62.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155205740.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.117 kcal (2) G-P(sol) polarization free energy of solvation -64.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds