Wall clock time and date at job start Tue Mar 31 2020 11:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.45511 * 2 1 4 4 C 1.53042 * 109.46423 * 240.02386 * 2 1 3 5 5 C 1.53116 * 109.27879 * 180.80411 * 4 2 1 6 6 H 1.09003 * 109.57562 * 297.72056 * 5 4 2 7 7 N 1.46902 * 109.52197 * 177.55819 * 5 4 2 8 8 C 1.46904 * 110.99820 * 56.36759 * 7 5 4 9 9 C 1.46896 * 110.99952 * 180.31796 * 7 5 4 10 10 C 1.53000 * 109.47404 * 170.00531 * 9 7 5 11 11 C 1.50698 * 109.47571 * 180.02562 * 10 9 7 12 12 H 1.08002 * 119.99714 * 359.97438 * 11 10 9 13 13 C 1.37873 * 120.00213 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99838 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 120.00122 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47161 * 0.02562 * 15 13 11 17 17 H 1.48507 * 109.46632 * 120.00024 * 15 13 11 18 18 H 1.48493 * 109.47398 * 240.00169 * 15 13 11 19 19 C 1.53126 * 109.15951 * 57.65775 * 5 4 2 20 20 C 1.53039 * 109.27639 * 302.34520 * 19 5 4 21 21 N 1.46845 * 109.46087 * 119.97417 * 2 1 3 22 22 C 1.46897 * 110.99945 * 305.85422 * 21 2 1 23 23 C 1.50704 * 109.47237 * 172.07667 * 22 21 2 24 24 C 1.38230 * 119.99907 * 275.22559 * 23 22 21 25 25 C 1.38230 * 120.00404 * 180.32352 * 24 23 22 26 26 C 1.38242 * 119.99749 * 359.95318 * 25 24 23 27 27 C 1.38241 * 119.99691 * 0.02562 * 26 25 24 28 28 C 1.38234 * 119.99729 * 95.50055 * 23 22 21 29 29 H 1.08991 * 109.47396 * 305.76667 * 1 2 3 30 30 H 1.09008 * 109.46813 * 65.76641 * 1 2 3 31 31 H 1.08994 * 109.47376 * 185.76249 * 1 2 3 32 32 H 1.09000 * 109.50017 * 60.86393 * 4 2 1 33 33 H 1.08997 * 109.50490 * 300.74993 * 4 2 1 34 34 H 1.08995 * 109.46887 * 59.99583 * 8 7 5 35 35 H 1.08992 * 109.47195 * 179.97438 * 8 7 5 36 36 H 1.08998 * 109.46542 * 300.00005 * 8 7 5 37 37 H 1.09006 * 109.47340 * 290.00226 * 9 7 5 38 38 H 1.09001 * 109.47211 * 49.99868 * 9 7 5 39 39 H 1.09006 * 109.46624 * 300.00134 * 10 9 7 40 40 H 1.08995 * 109.47114 * 59.99282 * 10 9 7 41 41 H 0.97005 * 119.99595 * 180.02562 * 14 13 11 42 42 H 1.08997 * 109.50326 * 182.40358 * 19 5 4 43 43 H 1.08996 * 109.50395 * 62.28680 * 19 5 4 44 44 H 1.09004 * 109.45753 * 299.16353 * 20 19 5 45 45 H 1.08993 * 109.45265 * 179.19253 * 20 19 5 46 46 H 1.09000 * 109.47125 * 52.07549 * 22 21 2 47 47 H 1.09007 * 109.47331 * 292.07572 * 22 21 2 48 48 H 1.08006 * 120.00104 * 0.27339 * 24 23 22 49 49 H 1.07994 * 120.00766 * 179.97438 * 25 24 23 50 50 H 1.07995 * 119.99952 * 179.97438 * 26 25 24 51 51 H 1.08001 * 119.99588 * 179.97438 * 27 26 25 52 52 H 1.07993 * 120.00566 * 359.72301 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0277 0.0000 4 6 2.0399 -0.7210 -1.2499 5 6 3.5710 -0.7361 -1.2356 6 1 3.9466 0.2867 -1.2677 7 7 4.0655 -1.4777 -2.4032 8 6 3.5428 -0.9048 -3.6508 9 6 5.5339 -1.5188 -2.4174 10 6 6.0063 -2.4983 -3.4937 11 6 7.5126 -2.5409 -3.5079 12 1 8.0766 -1.9302 -2.8185 13 6 8.1707 -3.3596 -4.4010 14 7 7.4839 -4.1030 -5.2408 15 14 10.0379 -3.4120 -4.4190 16 1 10.5690 -2.4890 -3.3840 17 1 10.4971 -4.7946 -4.1312 18 1 10.5320 -2.9945 -5.7557 19 6 4.0548 -1.4189 0.0468 20 6 3.4864 -0.6777 1.2592 21 7 2.0192 -0.6917 1.1994 22 6 1.4372 -0.1105 2.4165 23 6 1.8047 -0.9614 3.6048 24 6 1.0425 -2.0696 3.9236 25 6 1.3756 -2.8463 5.0175 26 6 2.4716 -2.5152 5.7922 27 6 3.2341 -1.4071 5.4732 28 6 2.9007 -0.6303 4.3794 29 1 -0.3634 0.6006 0.8338 30 1 -0.3633 0.4218 -0.9372 31 1 -0.3634 -1.0224 0.1032 32 1 1.6895 -0.1982 -2.1399 33 1 1.6659 -1.7447 -1.2576 34 1 3.8623 0.1338 -3.7354 35 1 3.9248 -1.4724 -4.4993 36 1 2.4538 -0.9506 -3.6433 37 1 5.9231 -0.5242 -2.6352 38 1 5.8976 -1.8460 -1.4434 39 1 5.6170 -3.4929 -3.2759 40 1 5.6425 -2.1711 -4.4676 41 1 7.9470 -4.6792 -5.8689 42 1 5.1439 -1.3948 0.0833 43 1 3.7125 -2.4536 0.0596 44 1 3.8403 0.3533 1.2532 45 1 3.8174 -1.1700 2.1735 46 1 0.3523 -0.0728 2.3182 47 1 1.8245 0.8985 2.5584 48 1 0.1862 -2.3283 3.3183 49 1 0.7799 -3.7119 5.2668 50 1 2.7316 -3.1217 6.6471 51 1 4.0901 -1.1482 6.0787 52 1 3.4963 0.2355 4.1305 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156933434.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:53 Heat of formation + Delta-G solvation = 26.267689 kcal Electronic energy + Delta-G solvation = -26829.299453 eV Core-core repulsion = 23407.070542 eV Total energy + Delta-G solvation = -3422.228911 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.11112 -38.94914 -36.88382 -33.61285 -32.83006 -32.35924 -31.04197 -30.65810 -29.24381 -27.07719 -26.54653 -25.33298 -23.81549 -22.85754 -22.15625 -21.46300 -20.72194 -19.74405 -19.38995 -16.96260 -16.50022 -16.05062 -15.75179 -15.50339 -14.94097 -14.87517 -14.53671 -14.38526 -14.20403 -13.85006 -13.60441 -13.40215 -13.34947 -12.82629 -12.72951 -12.41080 -12.24035 -12.16681 -12.03626 -11.93272 -11.79686 -11.29550 -11.16017 -11.05887 -11.01933 -10.94243 -10.88157 -10.79980 -10.55693 -10.29585 -10.05613 -9.65810 -9.29364 -9.06013 -9.05383 -8.92361 -8.35436 -8.29804 -7.64104 -5.96581 -3.98611 1.16555 1.25484 3.32808 3.40106 3.44090 3.50040 3.97481 4.35408 4.53296 4.56147 4.67055 4.81161 4.85455 4.91435 4.92925 5.00165 5.15730 5.24490 5.29887 5.33154 5.39293 5.41501 5.47177 5.53045 5.55085 5.65179 5.72020 5.74703 5.83883 5.84905 5.88177 5.91853 6.00879 6.03670 6.07655 6.20446 6.29627 6.34415 6.35438 6.39225 6.45689 6.49176 6.59016 6.64925 6.83239 7.02606 7.05371 7.08875 7.57945 7.65212 7.85668 7.95846 8.13332 8.47859 9.09033 9.64803 11.14848 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014248 B = 0.002796 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.707503 B =10011.347565 C =11411.660253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.084 3.916 3 H 0.036 0.964 4 C -0.103 4.103 5 C 0.085 3.915 6 H 0.026 0.974 7 N -0.536 5.536 8 C 0.024 3.976 9 C 0.060 3.940 10 C 0.028 3.972 11 C -0.520 4.520 12 H 0.053 0.947 13 C 0.058 3.942 14 N -0.893 5.893 15 Si 0.891 3.109 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.285 1.285 19 C -0.110 4.110 20 C 0.058 3.942 21 N -0.524 5.524 22 C 0.088 3.912 23 C -0.075 4.075 24 C -0.096 4.096 25 C -0.122 4.122 26 C -0.123 4.123 27 C -0.122 4.122 28 C -0.115 4.115 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.081 0.919 34 H 0.014 0.986 35 H 0.078 0.922 36 H 0.058 0.942 37 H 0.016 0.984 38 H 0.064 0.936 39 H 0.024 0.976 40 H 0.016 0.984 41 H 0.259 0.741 42 H 0.071 0.929 43 H 0.080 0.920 44 H 0.027 0.973 45 H 0.079 0.921 46 H 0.088 0.912 47 H 0.038 0.962 48 H 0.122 0.878 49 H 0.120 0.880 50 H 0.119 0.881 51 H 0.120 0.880 52 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.019 8.813 19.048 26.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.024 4.024 3 H 0.054 0.946 4 C -0.141 4.141 5 C -0.024 4.024 6 H 0.044 0.956 7 N -0.260 5.260 8 C -0.124 4.124 9 C -0.067 4.067 10 C -0.009 4.009 11 C -0.559 4.559 12 H 0.072 0.928 13 C -0.143 4.143 14 N -0.532 5.532 15 Si 0.719 3.281 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.211 1.211 19 C -0.148 4.148 20 C -0.071 4.071 21 N -0.249 5.249 22 C -0.039 4.039 23 C -0.075 4.075 24 C -0.115 4.115 25 C -0.140 4.140 26 C -0.141 4.141 27 C -0.140 4.140 28 C -0.134 4.134 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.099 0.901 34 H 0.032 0.968 35 H 0.096 0.904 36 H 0.077 0.923 37 H 0.034 0.966 38 H 0.083 0.917 39 H 0.043 0.957 40 H 0.034 0.966 41 H 0.069 0.931 42 H 0.089 0.911 43 H 0.099 0.901 44 H 0.046 0.954 45 H 0.097 0.903 46 H 0.106 0.894 47 H 0.056 0.944 48 H 0.140 0.860 49 H 0.138 0.862 50 H 0.137 0.863 51 H 0.138 0.862 52 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -16.314 7.732 18.883 26.125 hybrid contribution 1.763 1.590 -0.122 2.378 sum -14.550 9.322 18.761 25.507 Atomic orbital electron populations 1.21918 0.94415 1.02653 1.01477 1.21611 0.95153 0.95251 0.90408 0.94568 1.21722 0.94954 1.01976 0.95456 1.21614 0.94454 0.94654 0.91653 0.95567 1.62134 1.10964 1.51865 1.01034 1.22406 0.99414 0.96964 0.93598 1.22396 0.83763 0.98832 1.01676 1.19092 0.94993 0.94280 0.92535 1.21238 0.91901 1.24355 1.18405 0.92845 1.24991 0.98213 0.95558 0.95580 1.69986 1.35130 1.26828 1.21287 0.86560 0.85992 0.77816 0.77767 1.19805 1.20976 1.21078 1.21676 1.00175 1.00885 0.92028 1.22150 0.86662 0.98602 0.99639 1.62008 1.07580 1.54619 1.00742 1.21130 1.00547 0.94428 0.87788 1.19753 0.95522 0.96441 0.95833 1.21004 0.99765 0.94244 0.96464 1.21161 0.97532 0.99671 0.95635 1.21147 0.95700 0.97339 0.99908 1.21111 0.99759 0.95626 0.97486 1.21075 0.96812 1.00012 0.95481 0.92833 0.92081 0.91450 0.91598 0.90068 0.96764 0.90375 0.92289 0.96609 0.91749 0.95736 0.96552 0.93096 0.91060 0.90095 0.95447 0.90279 0.89400 0.94411 0.85978 0.86182 0.86321 0.86243 0.86481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 8.58 37.16 0.32 -0.97 16 2 C 0.08 0.92 2.44 -67.72 -0.17 0.75 16 3 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 4 C -0.10 -1.33 4.22 -26.65 -0.11 -1.44 16 5 C 0.09 1.31 2.01 -67.59 -0.14 1.17 16 6 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 7 N -0.54 -9.99 4.63 -234.74 -1.09 -11.08 16 8 C 0.02 0.42 8.92 60.07 0.54 0.96 16 9 C 0.06 1.30 4.71 -3.83 -0.02 1.28 16 10 C 0.03 0.75 4.90 -27.88 -0.14 0.62 16 11 C -0.52 -14.97 9.11 -34.44 -0.31 -15.28 16 12 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 13 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 14 N -0.89 -27.20 13.29 55.43 0.74 -26.46 16 15 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 16 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 18 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 19 C -0.11 -1.62 5.09 -26.65 -0.14 -1.76 16 20 C 0.06 0.71 5.18 -3.83 -0.02 0.69 16 21 N -0.52 -5.90 4.50 -228.12 -1.03 -6.93 16 22 C 0.09 0.84 4.79 -4.98 -0.02 0.81 16 23 C -0.08 -0.75 4.64 -104.62 -0.49 -1.23 16 24 C -0.10 -0.93 9.72 -39.59 -0.38 -1.32 16 25 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 26 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 27 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 28 C -0.12 -1.10 8.20 -39.58 -0.32 -1.43 16 29 H 0.05 0.41 6.50 -51.93 -0.34 0.07 16 30 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.81 6.51 -51.93 -0.34 0.47 16 33 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 35 H 0.08 1.51 6.30 -51.93 -0.33 1.18 16 36 H 0.06 0.87 6.30 -51.93 -0.33 0.54 16 37 H 0.02 0.34 8.12 -51.93 -0.42 -0.08 16 38 H 0.06 1.38 5.88 -51.93 -0.31 1.07 16 39 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.02 0.45 6.47 -51.93 -0.34 0.12 16 41 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 42 H 0.07 1.12 6.34 -51.93 -0.33 0.79 16 43 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 44 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.08 0.97 6.02 -51.93 -0.31 0.66 16 46 H 0.09 0.74 5.87 -51.93 -0.30 0.44 16 47 H 0.04 0.35 8.05 -51.93 -0.42 -0.07 16 48 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 49 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 50 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 51 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 52 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 LS Contribution 393.37 15.07 5.93 5.93 Total: -1.00 -30.78 393.37 -12.38 -43.17 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -9.22 Total: -1.47 kcal Atomic # 6 Polarization: -17.35 SS G_CDS: -2.69 Total: -20.04 kcal Atomic # 7 Polarization: -43.09 SS G_CDS: -1.38 Total: -44.47 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -30.78 -12.38 -43.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156933434.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.433 kcal (2) G-P(sol) polarization free energy of solvation -30.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds