Wall clock time and date at job start Tue Mar 31 2020 11:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.45511 * 2 1 4 4 C 1.53042 * 109.46423 * 240.02386 * 2 1 3 5 5 C 1.53116 * 109.27879 * 180.80411 * 4 2 1 6 6 H 1.09003 * 109.57562 * 297.72056 * 5 4 2 7 7 N 1.46902 * 109.52197 * 177.55819 * 5 4 2 8 8 C 1.46904 * 110.99820 * 56.36759 * 7 5 4 9 9 C 1.46896 * 110.99952 * 180.31796 * 7 5 4 10 10 C 1.53000 * 109.47404 * 170.00531 * 9 7 5 11 11 C 1.50698 * 109.47571 * 180.02562 * 10 9 7 12 12 H 1.08002 * 119.99714 * 359.97438 * 11 10 9 13 13 C 1.37873 * 120.00213 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99838 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 120.00122 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47161 * 0.02562 * 15 13 11 17 17 H 1.48507 * 109.46632 * 120.00024 * 15 13 11 18 18 H 1.48493 * 109.47398 * 240.00169 * 15 13 11 19 19 C 1.53126 * 109.15951 * 57.65775 * 5 4 2 20 20 C 1.53039 * 109.27639 * 302.34520 * 19 5 4 21 21 N 1.46845 * 109.46087 * 119.97417 * 2 1 3 22 22 C 1.46897 * 110.99945 * 305.85422 * 21 2 1 23 23 C 1.50704 * 109.47237 * 172.07667 * 22 21 2 24 24 C 1.38230 * 119.99907 * 275.22559 * 23 22 21 25 25 C 1.38230 * 120.00404 * 180.32352 * 24 23 22 26 26 C 1.38242 * 119.99749 * 359.95318 * 25 24 23 27 27 C 1.38241 * 119.99691 * 0.02562 * 26 25 24 28 28 C 1.38234 * 119.99729 * 95.50055 * 23 22 21 29 29 H 1.08991 * 109.47396 * 305.76667 * 1 2 3 30 30 H 1.09008 * 109.46813 * 65.76641 * 1 2 3 31 31 H 1.08994 * 109.47376 * 185.76249 * 1 2 3 32 32 H 1.09000 * 109.50017 * 60.86393 * 4 2 1 33 33 H 1.08997 * 109.50490 * 300.74993 * 4 2 1 34 34 H 1.08995 * 109.46887 * 59.99583 * 8 7 5 35 35 H 1.08992 * 109.47195 * 179.97438 * 8 7 5 36 36 H 1.08998 * 109.46542 * 300.00005 * 8 7 5 37 37 H 1.09006 * 109.47340 * 290.00226 * 9 7 5 38 38 H 1.09001 * 109.47211 * 49.99868 * 9 7 5 39 39 H 1.09006 * 109.46624 * 300.00134 * 10 9 7 40 40 H 1.08995 * 109.47114 * 59.99282 * 10 9 7 41 41 H 0.97005 * 119.99595 * 180.02562 * 14 13 11 42 42 H 1.08997 * 109.50326 * 182.40358 * 19 5 4 43 43 H 1.08996 * 109.50395 * 62.28680 * 19 5 4 44 44 H 1.09004 * 109.45753 * 299.16353 * 20 19 5 45 45 H 1.08993 * 109.45265 * 179.19253 * 20 19 5 46 46 H 1.09000 * 109.47125 * 52.07549 * 22 21 2 47 47 H 1.09007 * 109.47331 * 292.07572 * 22 21 2 48 48 H 1.08006 * 120.00104 * 0.27339 * 24 23 22 49 49 H 1.07994 * 120.00766 * 179.97438 * 25 24 23 50 50 H 1.07995 * 119.99952 * 179.97438 * 26 25 24 51 51 H 1.08001 * 119.99588 * 179.97438 * 27 26 25 52 52 H 1.07993 * 120.00566 * 359.72301 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0277 0.0000 4 6 2.0399 -0.7210 -1.2499 5 6 3.5710 -0.7361 -1.2356 6 1 3.9466 0.2867 -1.2677 7 7 4.0655 -1.4777 -2.4032 8 6 3.5428 -0.9048 -3.6508 9 6 5.5339 -1.5188 -2.4174 10 6 6.0063 -2.4983 -3.4937 11 6 7.5126 -2.5409 -3.5079 12 1 8.0766 -1.9302 -2.8185 13 6 8.1707 -3.3596 -4.4010 14 7 7.4839 -4.1030 -5.2408 15 14 10.0379 -3.4120 -4.4190 16 1 10.5690 -2.4890 -3.3840 17 1 10.4971 -4.7946 -4.1312 18 1 10.5320 -2.9945 -5.7557 19 6 4.0548 -1.4189 0.0468 20 6 3.4864 -0.6777 1.2592 21 7 2.0192 -0.6917 1.1994 22 6 1.4372 -0.1105 2.4165 23 6 1.8047 -0.9614 3.6048 24 6 1.0425 -2.0696 3.9236 25 6 1.3756 -2.8463 5.0175 26 6 2.4716 -2.5152 5.7922 27 6 3.2341 -1.4071 5.4732 28 6 2.9007 -0.6303 4.3794 29 1 -0.3634 0.6006 0.8338 30 1 -0.3633 0.4218 -0.9372 31 1 -0.3634 -1.0224 0.1032 32 1 1.6895 -0.1982 -2.1399 33 1 1.6659 -1.7447 -1.2576 34 1 3.8623 0.1338 -3.7354 35 1 3.9248 -1.4724 -4.4993 36 1 2.4538 -0.9506 -3.6433 37 1 5.9231 -0.5242 -2.6352 38 1 5.8976 -1.8460 -1.4434 39 1 5.6170 -3.4929 -3.2759 40 1 5.6425 -2.1711 -4.4676 41 1 7.9470 -4.6792 -5.8689 42 1 5.1439 -1.3948 0.0833 43 1 3.7125 -2.4536 0.0596 44 1 3.8403 0.3533 1.2532 45 1 3.8174 -1.1700 2.1735 46 1 0.3523 -0.0728 2.3182 47 1 1.8245 0.8985 2.5584 48 1 0.1862 -2.3283 3.3183 49 1 0.7799 -3.7119 5.2668 50 1 2.7316 -3.1217 6.6471 51 1 4.0901 -1.1482 6.0787 52 1 3.4963 0.2355 4.1305 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156933434.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:52 Heat of formation + Delta-G solvation = 9.049302 kcal Electronic energy + Delta-G solvation = -26830.046099 eV Core-core repulsion = 23407.070542 eV Total energy + Delta-G solvation = -3422.975556 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.02891 -39.84603 -38.16060 -35.37215 -34.08059 -33.48616 -31.99458 -31.70763 -30.71383 -28.29417 -27.65843 -26.65839 -25.39767 -23.70335 -23.12494 -22.64107 -21.84449 -21.03100 -20.61545 -18.59066 -17.64439 -17.17443 -16.62520 -16.54149 -16.43091 -16.01337 -15.84225 -15.73211 -15.25608 -14.99287 -14.80786 -14.55776 -14.23303 -14.14689 -13.85003 -13.57549 -13.47190 -13.30184 -13.15018 -12.98905 -12.96261 -12.83182 -12.71221 -12.43880 -12.24043 -12.18302 -11.94727 -11.84839 -11.81736 -11.67160 -11.49342 -11.31934 -11.15361 -10.96031 -10.54127 -9.74902 -9.63293 -9.21284 -9.16103 -8.20400 -6.31746 0.47344 0.56866 1.39092 1.39834 1.53043 2.39607 2.74384 3.03740 3.12773 3.17954 3.72999 3.88838 3.89118 3.96923 4.07903 4.17895 4.21542 4.27636 4.31414 4.38491 4.41854 4.44867 4.52260 4.53513 4.57233 4.62539 4.67554 4.72005 4.78680 4.81359 4.85062 4.90365 4.99038 5.00931 5.06571 5.07834 5.16371 5.17274 5.22409 5.26408 5.32760 5.44883 5.49389 5.61892 5.66526 5.68378 5.75524 5.79600 6.10414 6.14395 6.16286 6.23579 6.33667 6.36571 6.85467 7.37221 8.91974 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014248 B = 0.002796 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.707503 B =10011.347565 C =11411.660253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.087 3.913 3 H 0.040 0.960 4 C -0.096 4.096 5 C 0.087 3.913 6 H 0.027 0.973 7 N -0.549 5.549 8 C 0.028 3.972 9 C 0.078 3.922 10 C 0.038 3.962 11 C -0.544 4.544 12 H 0.058 0.942 13 C 0.001 3.999 14 N -0.931 5.931 15 Si 0.966 3.034 16 H -0.262 1.262 17 H -0.277 1.277 18 H -0.277 1.277 19 C -0.106 4.106 20 C 0.068 3.932 21 N -0.533 5.533 22 C 0.093 3.907 23 C -0.087 4.087 24 C -0.109 4.109 25 C -0.131 4.131 26 C -0.131 4.131 27 C -0.132 4.132 28 C -0.126 4.126 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.022 0.978 35 H 0.049 0.951 36 H 0.088 0.912 37 H 0.014 0.986 38 H 0.065 0.935 39 H -0.010 1.010 40 H -0.005 1.005 41 H 0.264 0.736 42 H 0.057 0.943 43 H 0.061 0.939 44 H 0.033 0.967 45 H 0.079 0.921 46 H 0.101 0.899 47 H 0.043 0.957 48 H 0.128 0.872 49 H 0.136 0.864 50 H 0.137 0.863 51 H 0.135 0.865 52 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.351 9.999 20.461 28.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.021 4.021 3 H 0.058 0.942 4 C -0.134 4.134 5 C -0.022 4.022 6 H 0.045 0.955 7 N -0.273 5.273 8 C -0.120 4.120 9 C -0.049 4.049 10 C 0.001 3.999 11 C -0.582 4.582 12 H 0.076 0.924 13 C -0.197 4.197 14 N -0.571 5.571 15 Si 0.791 3.209 16 H -0.186 1.186 17 H -0.203 1.203 18 H -0.203 1.203 19 C -0.144 4.144 20 C -0.060 4.060 21 N -0.258 5.258 22 C -0.034 4.034 23 C -0.088 4.088 24 C -0.127 4.127 25 C -0.149 4.149 26 C -0.149 4.149 27 C -0.150 4.150 28 C -0.145 4.145 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.041 0.959 35 H 0.068 0.932 36 H 0.106 0.894 37 H 0.032 0.968 38 H 0.083 0.917 39 H 0.009 0.991 40 H 0.013 0.987 41 H 0.073 0.927 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.051 0.949 45 H 0.097 0.903 46 H 0.119 0.881 47 H 0.062 0.938 48 H 0.146 0.854 49 H 0.154 0.846 50 H 0.155 0.845 51 H 0.152 0.848 52 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -16.667 8.932 20.310 27.750 hybrid contribution 1.817 1.184 -0.546 2.236 sum -14.850 10.116 19.764 26.711 Atomic orbital electron populations 1.21875 0.92456 1.02805 1.02732 1.21602 0.96617 0.94785 0.89128 0.94246 1.21669 0.92691 1.01706 0.97311 1.21705 0.96252 0.94026 0.90179 0.95494 1.62066 1.08879 1.53533 1.02869 1.22378 1.00995 0.96668 0.91955 1.22008 0.86083 0.97091 0.99751 1.18907 0.94348 0.93617 0.93067 1.21645 0.93102 1.24734 1.18762 0.92378 1.25966 1.03868 0.94904 0.94944 1.70121 1.37501 1.27496 1.21989 0.85382 0.79121 0.78195 0.78237 1.18611 1.20264 1.20257 1.21603 0.99423 1.00149 0.93232 1.21971 0.87611 0.98340 0.98070 1.61975 1.06715 1.55372 1.01735 1.21147 1.01154 0.94416 0.86682 1.19874 0.95892 0.96818 0.96188 1.21195 1.00155 0.94455 0.96939 1.21438 0.97851 1.00141 0.95481 1.21448 0.95529 0.97476 1.00435 1.21388 1.00321 0.95663 0.97583 1.21250 0.96962 1.00471 0.95803 0.91257 0.91114 0.91920 0.90556 0.91416 0.95940 0.93205 0.89400 0.96827 0.91656 0.99139 0.98715 0.92747 0.92437 0.92053 0.94893 0.90309 0.88092 0.93840 0.85384 0.84613 0.84545 0.84753 0.85867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 8.58 71.98 0.62 -1.47 16 2 C 0.09 1.71 2.44 44.94 0.11 1.82 16 3 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 4 C -0.10 -2.34 4.22 30.65 0.13 -2.21 16 5 C 0.09 2.62 2.01 45.00 0.09 2.71 16 6 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 7 N -0.55 -20.79 4.63 -896.57 -4.15 -24.94 16 8 C 0.03 0.97 8.92 127.69 1.14 2.11 16 9 C 0.08 3.48 4.71 86.30 0.41 3.89 16 10 C 0.04 2.11 4.90 29.85 0.15 2.25 16 11 C -0.54 -31.96 9.11 25.60 0.23 -31.73 16 12 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 13 C 0.00 0.06 5.46 84.65 0.46 0.53 16 14 N -0.93 -57.95 13.29 21.45 0.28 -57.66 16 15 Si 0.97 45.11 29.54 68.60 2.03 47.14 16 16 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 17 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 18 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 19 C -0.11 -3.15 5.09 30.65 0.16 -3.00 16 20 C 0.07 1.62 5.18 86.33 0.45 2.07 16 21 N -0.53 -11.17 4.50 -875.65 -3.94 -15.11 16 22 C 0.09 1.57 4.79 85.56 0.41 1.98 16 23 C -0.09 -1.62 4.64 -19.87 -0.09 -1.71 16 24 C -0.11 -1.98 9.72 22.27 0.22 -1.76 16 25 C -0.13 -2.20 10.05 22.27 0.22 -1.97 16 26 C -0.13 -2.12 10.05 22.27 0.22 -1.90 16 27 C -0.13 -2.21 10.05 22.27 0.22 -1.99 16 28 C -0.13 -2.27 8.20 22.27 0.18 -2.09 16 29 H 0.07 0.82 6.50 -2.39 -0.02 0.81 16 30 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 31 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.08 1.70 6.51 -2.39 -0.02 1.68 16 33 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.05 1.99 6.30 -2.39 -0.02 1.98 16 36 H 0.09 2.49 6.30 -2.39 -0.02 2.48 16 37 H 0.01 0.60 8.12 -2.38 -0.02 0.58 16 38 H 0.07 2.87 5.88 -2.39 -0.01 2.86 16 39 H -0.01 -0.60 8.14 -2.38 -0.02 -0.62 16 40 H -0.01 -0.32 6.47 -2.39 -0.02 -0.34 16 41 H 0.26 15.32 8.31 -92.70 -0.77 14.54 16 42 H 0.06 1.84 6.34 -2.39 -0.02 1.82 16 43 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 44 H 0.03 0.75 8.14 -2.38 -0.02 0.73 16 45 H 0.08 1.88 6.02 -2.39 -0.01 1.87 16 46 H 0.10 1.44 5.87 -2.39 -0.01 1.43 16 47 H 0.04 0.70 8.05 -2.38 -0.02 0.68 16 48 H 0.13 2.07 8.06 -2.91 -0.02 2.04 16 49 H 0.14 1.73 8.06 -2.91 -0.02 1.70 16 50 H 0.14 1.62 8.06 -2.91 -0.02 1.60 16 51 H 0.13 1.74 8.06 -2.91 -0.02 1.72 16 52 H 0.12 1.97 8.06 -2.91 -0.02 1.94 16 Total: -1.00 -67.27 393.37 0.41 -66.87 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: 0.86 Total: 16.17 kcal Atomic # 6 Polarization: -37.78 SS G_CDS: 5.33 Total: -32.46 kcal Atomic # 7 Polarization: -89.91 SS G_CDS: -7.81 Total: -97.71 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -67.27 0.41 -66.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156933434.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.918 kcal (2) G-P(sol) polarization free energy of solvation -67.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds