Wall clock time and date at job start Tue Mar 31 2020 11:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.45016 * 2 1 4 4 C 1.53036 * 109.46544 * 119.97455 * 2 1 3 5 5 C 1.53111 * 109.31208 * 179.21703 * 4 2 1 6 6 H 1.08998 * 109.52448 * 62.29772 * 5 4 2 7 7 N 1.46907 * 109.52163 * 182.41834 * 5 4 2 8 8 C 1.46897 * 111.00275 * 303.95585 * 7 5 4 9 9 C 1.46900 * 110.99957 * 180.02562 * 7 5 4 10 10 C 1.53000 * 109.47212 * 190.00247 * 9 7 5 11 11 C 1.50700 * 109.47092 * 180.02562 * 10 9 7 12 12 H 1.08003 * 120.00092 * 359.97438 * 11 10 9 13 13 C 1.37879 * 119.99831 * 179.97438 * 11 10 9 14 14 N 1.31510 * 119.99966 * 179.97438 * 13 11 10 15 15 Si 1.86802 * 120.00096 * 0.02562 * 13 11 10 16 16 H 1.48498 * 109.46952 * 89.99925 * 15 13 11 17 17 H 1.48497 * 109.47197 * 209.99801 * 15 13 11 18 18 H 1.48495 * 109.46879 * 330.00119 * 15 13 11 19 19 C 1.53110 * 109.16324 * 302.32683 * 5 4 2 20 20 C 1.53036 * 109.27974 * 57.65397 * 19 5 4 21 21 N 1.46843 * 109.52310 * 300.82133 * 20 19 5 22 22 C 1.46899 * 111.00188 * 185.83762 * 21 20 19 23 23 C 1.50697 * 109.46978 * 65.36610 * 22 21 20 24 24 C 1.38239 * 119.99771 * 264.63304 * 23 22 21 25 25 C 1.38236 * 119.99693 * 179.74410 * 24 23 22 26 26 C 1.38237 * 120.00140 * 0.55246 * 25 24 23 27 27 C 1.38237 * 119.99813 * 359.69922 * 26 25 24 28 28 C 1.38231 * 119.99876 * 0.02904 * 27 26 25 29 29 H 1.08996 * 109.47592 * 293.07215 * 1 2 3 30 30 H 1.09002 * 109.47292 * 53.07431 * 1 2 3 31 31 H 1.09002 * 109.47004 * 173.06804 * 1 2 3 32 32 H 1.09001 * 109.50259 * 59.25149 * 4 2 1 33 33 H 1.08998 * 109.50229 * 299.18057 * 4 2 1 34 34 H 1.09003 * 109.47285 * 59.99382 * 8 7 5 35 35 H 1.08992 * 109.47234 * 179.97438 * 8 7 5 36 36 H 1.09006 * 109.46868 * 300.00323 * 8 7 5 37 37 H 1.09001 * 109.47008 * 310.00505 * 9 7 5 38 38 H 1.09001 * 109.47214 * 69.99811 * 9 7 5 39 39 H 1.09002 * 109.46935 * 300.00397 * 10 9 7 40 40 H 1.09002 * 109.47072 * 60.00108 * 10 9 7 41 41 H 0.97002 * 120.00241 * 180.02562 * 14 13 11 42 42 H 1.09004 * 109.50952 * 177.59695 * 19 5 4 43 43 H 1.09007 * 109.50164 * 297.67330 * 19 5 4 44 44 H 1.08994 * 109.46372 * 60.84144 * 20 19 5 45 45 H 1.09001 * 109.46431 * 180.80871 * 20 19 5 46 46 H 1.09004 * 109.47411 * 185.36459 * 22 21 20 47 47 H 1.09001 * 109.47130 * 305.36363 * 22 21 20 48 48 H 1.07996 * 120.00322 * 359.97438 * 24 23 22 49 49 H 1.08000 * 120.00204 * 180.27634 * 25 24 23 50 50 H 1.08002 * 120.00244 * 179.72360 * 26 25 24 51 51 H 1.08000 * 119.99555 * 179.97438 * 27 26 25 52 52 H 1.08005 * 119.99652 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0399 -0.7209 1.2499 5 6 3.5709 -0.7360 1.2365 6 1 3.9456 0.2871 1.2694 7 7 4.0648 -1.4773 2.4047 8 6 3.5352 -0.9088 3.6514 9 6 5.5333 -1.5114 2.4243 10 6 6.0064 -2.4905 3.5006 11 6 7.5128 -2.5250 3.5211 12 1 8.0765 -1.9104 2.8348 13 6 8.1716 -3.3412 4.4160 14 7 9.4862 -3.3717 4.4335 15 14 7.1967 -4.4049 5.6025 16 1 6.9280 -5.7249 4.9776 17 1 7.9779 -4.5979 6.8506 18 1 5.9094 -3.7374 5.9224 19 6 4.0556 -1.4189 -0.0453 20 6 3.4881 -0.6781 -1.2581 21 7 2.0209 -0.6922 -1.1995 22 6 1.4397 -0.1113 -2.4171 23 6 1.7740 -0.9843 -3.5991 24 6 2.8707 -0.6899 -4.3875 25 6 3.1804 -1.4937 -5.4686 26 6 2.3869 -2.5853 -5.7682 27 6 1.2872 -2.8766 -4.9829 28 6 0.9807 -2.0760 -3.8984 29 1 -0.3634 0.4027 0.9454 30 1 -0.3634 0.6174 -0.8215 31 1 -0.3633 -1.0202 -0.1240 32 1 1.6659 -1.7447 1.2576 33 1 1.6889 -0.1986 2.1399 34 1 2.4464 -0.9593 3.6401 35 1 3.9161 -1.4766 4.5002 36 1 3.8497 0.1312 3.7389 37 1 5.9022 -1.8351 1.4511 38 1 5.9169 -0.5153 2.6453 39 1 5.6374 -2.1668 4.4738 40 1 5.6227 -3.4866 3.2796 41 1 9.9497 -3.9463 5.0629 42 1 5.1448 -1.3948 -0.0810 43 1 3.7140 -2.4540 -0.0577 44 1 3.8419 0.3528 -1.2523 45 1 3.8197 -1.1705 -2.1723 46 1 0.3571 -0.0466 -2.3078 47 1 1.8492 0.8865 -2.5749 48 1 3.4877 0.1659 -4.1566 49 1 4.0398 -1.2664 -6.0819 50 1 2.6263 -3.2107 -6.6155 51 1 0.6670 -3.7291 -5.2172 52 1 0.1213 -2.3034 -3.2851 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156933854.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:59 Heat of formation + Delta-G solvation = 11.164134 kcal Electronic energy + Delta-G solvation = -26883.151388 eV Core-core repulsion = 23460.267538 eV Total energy + Delta-G solvation = -3422.883850 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.02810 -39.85743 -38.19141 -35.33824 -34.12118 -33.50848 -32.27549 -31.71347 -30.86212 -28.43379 -27.66646 -26.67035 -25.23512 -23.69312 -23.10678 -22.49908 -21.81234 -21.06559 -20.62361 -18.99712 -17.65308 -17.21835 -16.64926 -16.47210 -16.35498 -15.99770 -15.88097 -15.68821 -15.29015 -15.03602 -14.89155 -14.65852 -14.45528 -14.22721 -13.92353 -13.58874 -13.51163 -13.31964 -13.24355 -13.01221 -12.97732 -12.79111 -12.70900 -12.26298 -12.19517 -12.06257 -11.91612 -11.87124 -11.78908 -11.71567 -11.55208 -11.38248 -11.22596 -10.98980 -10.76208 -9.75394 -9.63651 -9.23240 -9.20459 -8.30964 -6.35120 0.46988 0.56432 1.36214 1.37161 1.50089 2.35810 2.73592 2.98020 3.04626 3.17526 3.72301 3.88160 3.88500 3.96286 4.07538 4.17001 4.21069 4.25607 4.30734 4.37833 4.40225 4.43348 4.50235 4.52931 4.54595 4.62342 4.65831 4.70825 4.77697 4.79778 4.83884 4.88506 4.97865 4.99363 5.02219 5.05477 5.14118 5.16765 5.21904 5.23600 5.30214 5.35526 5.47339 5.47975 5.61435 5.62059 5.68005 5.74860 6.11876 6.13583 6.16361 6.22862 6.26590 6.33060 6.72360 7.29617 8.85848 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.015284 B = 0.002836 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.590067 B = 9871.184904 C =10976.358332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.086 3.914 3 H 0.038 0.962 4 C -0.095 4.095 5 C 0.086 3.914 6 H 0.025 0.975 7 N -0.546 5.546 8 C 0.022 3.978 9 C 0.080 3.920 10 C 0.002 3.998 11 C -0.533 4.533 12 H 0.030 0.970 13 C 0.007 3.993 14 N -0.951 5.951 15 Si 0.953 3.047 16 H -0.267 1.267 17 H -0.282 1.282 18 H -0.248 1.248 19 C -0.107 4.107 20 C 0.067 3.933 21 N -0.531 5.531 22 C 0.092 3.908 23 C -0.087 4.087 24 C -0.127 4.127 25 C -0.132 4.132 26 C -0.131 4.131 27 C -0.131 4.131 28 C -0.108 4.108 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.090 0.910 35 H 0.058 0.942 36 H 0.021 0.979 37 H 0.063 0.937 38 H 0.012 0.988 39 H 0.020 0.980 40 H 0.018 0.982 41 H 0.267 0.733 42 H 0.054 0.946 43 H 0.065 0.935 44 H 0.030 0.970 45 H 0.077 0.923 46 H 0.102 0.898 47 H 0.042 0.958 48 H 0.122 0.878 49 H 0.133 0.867 50 H 0.136 0.864 51 H 0.137 0.863 52 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.760 7.285 -17.416 30.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.023 4.023 3 H 0.056 0.944 4 C -0.133 4.133 5 C -0.022 4.022 6 H 0.043 0.957 7 N -0.270 5.270 8 C -0.126 4.126 9 C -0.047 4.047 10 C -0.036 4.036 11 C -0.572 4.572 12 H 0.049 0.951 13 C -0.190 4.190 14 N -0.591 5.591 15 Si 0.776 3.224 16 H -0.193 1.193 17 H -0.208 1.208 18 H -0.171 1.171 19 C -0.145 4.145 20 C -0.061 4.061 21 N -0.256 5.256 22 C -0.034 4.034 23 C -0.087 4.087 24 C -0.146 4.146 25 C -0.150 4.150 26 C -0.149 4.149 27 C -0.149 4.149 28 C -0.127 4.127 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.109 0.891 35 H 0.077 0.923 36 H 0.040 0.960 37 H 0.081 0.919 38 H 0.030 0.970 39 H 0.038 0.962 40 H 0.036 0.964 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.084 0.916 44 H 0.049 0.951 45 H 0.096 0.904 46 H 0.120 0.880 47 H 0.060 0.940 48 H 0.140 0.860 49 H 0.151 0.849 50 H 0.154 0.846 51 H 0.155 0.845 52 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -23.944 6.265 -17.317 30.207 hybrid contribution 1.379 1.119 0.589 1.871 sum -22.565 7.385 -16.728 29.044 Atomic orbital electron populations 1.21872 0.92375 1.02850 1.02737 1.21635 0.96659 0.94772 0.89220 0.94443 1.21669 0.92456 1.01913 0.97250 1.21694 0.96368 0.93992 0.90137 0.95674 1.62100 1.08209 1.53654 1.03037 1.22467 1.01261 0.96944 0.91896 1.21860 0.86273 0.97008 0.99570 1.19426 0.93373 0.95664 0.95124 1.21416 0.92009 1.24773 1.18980 0.95125 1.25979 0.95773 0.98120 0.99159 1.70062 1.09163 1.41051 1.38857 0.85617 0.79442 0.79294 0.78039 1.19252 1.20784 1.17118 1.21602 0.99282 1.00339 0.93254 1.21969 0.87696 0.98269 0.98169 1.62003 1.06574 1.55307 1.01742 1.21144 1.01288 0.94204 0.86814 1.19875 0.95761 0.96962 0.96121 1.21247 0.97117 1.00349 0.95872 1.21383 1.00242 0.95644 0.97759 1.21445 0.95392 0.97680 1.00396 1.21442 0.97913 1.00051 0.95453 1.21197 1.00040 0.94365 0.97051 0.91015 0.91422 0.91769 0.91026 0.90337 0.89116 0.92348 0.96008 0.91855 0.96991 0.96180 0.96358 0.92413 0.92750 0.91631 0.95131 0.90431 0.87981 0.93998 0.86025 0.84888 0.84574 0.84525 0.85220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 8.55 71.98 0.62 -1.28 16 2 C 0.09 1.58 2.45 44.92 0.11 1.69 16 3 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 4 C -0.09 -2.11 4.20 30.64 0.13 -1.98 16 5 C 0.09 2.45 2.01 44.99 0.09 2.54 16 6 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 7 N -0.55 -18.77 4.63 -896.60 -4.15 -22.92 16 8 C 0.02 0.67 8.91 127.69 1.14 1.81 16 9 C 0.08 3.39 4.72 86.30 0.41 3.80 16 10 C 0.00 0.09 3.97 29.85 0.12 0.21 16 11 C -0.53 -31.86 9.66 25.60 0.25 -31.61 16 12 H 0.03 2.00 7.99 -2.91 -0.02 1.98 16 13 C 0.01 0.39 5.47 84.66 0.46 0.86 16 14 N -0.95 -60.86 13.96 21.45 0.30 -60.57 16 15 Si 0.95 45.69 27.47 68.60 1.88 47.57 16 16 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 17 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 18 H -0.25 -11.08 6.54 99.48 0.65 -10.43 16 19 C -0.11 -3.06 5.10 30.64 0.16 -2.90 16 20 C 0.07 1.57 5.21 86.33 0.45 2.02 16 21 N -0.53 -10.68 4.49 -875.46 -3.93 -14.61 16 22 C 0.09 1.53 4.82 85.56 0.41 1.94 16 23 C -0.09 -1.58 4.71 -19.87 -0.09 -1.67 16 24 C -0.13 -2.31 8.21 22.27 0.18 -2.12 16 25 C -0.13 -2.25 10.05 22.27 0.22 -2.03 16 26 C -0.13 -2.12 10.05 22.27 0.22 -1.89 16 27 C -0.13 -2.13 10.05 22.27 0.22 -1.91 16 28 C -0.11 -1.90 9.72 22.27 0.22 -1.68 16 29 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.07 0.74 6.55 -2.39 -0.02 0.73 16 31 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.08 1.55 6.50 -2.39 -0.02 1.53 16 34 H 0.09 2.19 6.30 -2.39 -0.02 2.17 16 35 H 0.06 1.94 6.30 -2.39 -0.02 1.93 16 36 H 0.02 0.63 8.14 -2.38 -0.02 0.61 16 37 H 0.06 2.73 5.90 -2.39 -0.01 2.72 16 38 H 0.01 0.52 8.12 -2.39 -0.02 0.50 16 39 H 0.02 0.97 5.53 -2.39 -0.01 0.96 16 40 H 0.02 0.90 7.57 -2.39 -0.02 0.88 16 41 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 42 H 0.05 1.73 6.35 -2.39 -0.02 1.71 16 43 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 44 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 45 H 0.08 1.84 6.06 -2.39 -0.01 1.83 16 46 H 0.10 1.39 5.81 -2.38 -0.01 1.38 16 47 H 0.04 0.67 8.03 -2.39 -0.02 0.65 16 48 H 0.12 1.99 8.06 -2.91 -0.02 1.97 16 49 H 0.13 1.79 8.06 -2.91 -0.02 1.76 16 50 H 0.14 1.62 8.06 -2.91 -0.02 1.60 16 51 H 0.14 1.66 8.06 -2.91 -0.02 1.64 16 52 H 0.13 1.97 8.06 -2.91 -0.02 1.94 16 Total: -1.00 -68.30 389.88 0.22 -68.07 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: 0.81 Total: 16.67 kcal Atomic # 6 Polarization: -39.53 SS G_CDS: 5.31 Total: -34.22 kcal Atomic # 7 Polarization: -90.31 SS G_CDS: -7.78 Total: -98.09 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 1.88 Total: 47.57 kcal Total: -68.30 0.22 -68.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156933854.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.237 kcal (2) G-P(sol) polarization free energy of solvation -68.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds