Wall clock time and date at job start Tue Mar 31 2020 11:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53010 * 109.47140 * 2 1 4 4 C 1.53004 * 109.47148 * 240.00414 * 2 1 3 5 5 C 1.50696 * 109.46938 * 59.99717 * 4 2 1 6 6 H 1.07999 * 120.00924 * 0.02562 * 5 4 2 7 7 C 1.37881 * 119.99778 * 179.97438 * 5 4 2 8 8 N 1.31519 * 120.00034 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00218 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47066 * 60.00453 * 9 7 5 11 11 H 1.48495 * 109.47127 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.46990 * 300.00006 * 9 7 5 13 13 C 1.52997 * 109.47130 * 120.00001 * 2 1 3 14 14 N 1.46896 * 109.47418 * 305.98521 * 13 2 1 15 15 C 1.47998 * 110.99870 * 98.63940 * 14 13 2 16 16 C 1.50514 * 112.75159 * 84.83640 * 15 14 13 17 17 C 1.54311 * 108.45868 * 93.83404 * 16 15 14 18 18 C 1.45875 * 112.12167 * 281.34322 * 17 16 15 19 19 C 1.54308 * 112.18439 * 61.16347 * 18 17 16 20 20 C 1.48000 * 111.00376 * 227.36591 * 14 13 2 21 21 H 1.08998 * 108.80817 * 312.20630 * 20 14 13 22 22 C 1.50693 * 108.72704 * 70.54032 * 20 14 13 23 23 C 1.38645 * 120.79041 * 42.96438 * 22 20 14 24 24 C 1.38208 * 119.16192 * 179.75893 * 23 22 20 25 25 N 1.31866 * 120.76546 * 0.52506 * 24 23 22 26 26 C 1.31868 * 121.72500 * 359.74859 * 25 24 23 27 27 C 1.38210 * 120.76260 * 359.97438 * 26 25 24 28 28 H 1.09007 * 109.47050 * 330.31816 * 1 2 3 29 29 H 1.09003 * 109.47353 * 90.31281 * 1 2 3 30 30 H 1.08995 * 109.47393 * 210.31458 * 1 2 3 31 31 H 1.08993 * 109.46784 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.46738 * 300.00474 * 3 2 1 33 33 H 1.08997 * 109.46675 * 59.99776 * 3 2 1 34 34 H 1.09003 * 109.47079 * 179.97438 * 4 2 1 35 35 H 1.08996 * 109.46788 * 300.00073 * 4 2 1 36 36 H 0.97002 * 120.00231 * 180.02562 * 8 7 5 37 37 H 1.09001 * 109.46868 * 185.98556 * 13 2 1 38 38 H 1.08996 * 109.46970 * 65.98869 * 13 2 1 39 39 H 1.09005 * 108.81326 * 205.70256 * 15 14 13 40 40 H 1.08999 * 108.81375 * 324.08681 * 15 14 13 41 41 H 1.09005 * 109.71299 * 334.11380 * 16 15 14 42 42 H 1.08999 * 109.58942 * 213.49430 * 16 15 14 43 43 H 1.09007 * 108.93425 * 160.68903 * 17 16 15 44 44 H 1.08999 * 108.93576 * 41.99932 * 17 16 15 45 45 H 1.08998 * 108.94308 * 181.86483 * 18 17 16 46 46 H 1.09000 * 108.93674 * 300.47273 * 18 17 16 47 47 H 1.08997 * 109.63442 * 41.16610 * 19 18 17 48 48 H 1.09001 * 109.63218 * 161.56120 * 19 18 17 49 49 H 1.08004 * 120.41998 * 0.02562 * 23 22 20 50 50 H 1.08009 * 119.61954 * 180.29784 * 24 23 22 51 51 H 1.08001 * 119.61817 * 179.97438 * 26 25 24 52 52 H 1.07997 * 120.41199 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0107 -2.4797 6 1 0.9170 0.8676 -2.3807 7 6 1.8711 -0.4814 -3.7320 8 7 2.6273 -1.5507 -3.8527 9 14 1.2479 0.3988 -5.2572 10 1 1.7418 1.7992 -5.2571 11 1 1.7430 -0.3011 -6.4697 12 1 -0.2371 0.3976 -5.2573 13 6 2.0400 -0.7212 1.2492 14 7 1.4360 -0.1172 2.4443 15 6 0.2794 -0.9124 2.9136 16 6 0.6824 -2.0544 3.8074 17 6 0.5949 -1.5815 5.2737 18 6 1.7449 -0.7710 5.6590 19 6 1.8633 0.5128 4.8111 20 6 2.4603 0.1512 3.4783 21 1 3.0786 -0.7381 3.5997 22 6 3.3322 1.2883 3.0118 23 6 2.7769 2.4100 2.4154 24 6 3.6077 3.4353 2.0047 25 7 4.9138 3.3506 2.1653 26 6 5.4769 2.2969 2.7233 27 6 4.7093 1.2352 3.1637 28 1 -0.3633 0.8929 0.5089 29 1 -0.3634 -0.0056 -1.0277 30 1 -0.3634 -0.8871 0.5187 31 1 3.1299 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 3.1300 -0.7208 -1.2495 35 1 1.6766 -1.7488 -1.2494 36 1 2.8623 -1.8816 -4.7338 37 1 3.1247 -0.6293 1.3044 38 1 1.7668 -1.7751 1.1972 39 1 -0.3979 -0.2578 3.4621 40 1 -0.2459 -1.3140 2.0470 41 1 1.7050 -2.3559 3.5803 42 1 0.0066 -2.8955 3.6529 43 1 0.5433 -2.4545 5.9244 44 1 -0.3126 -0.9914 5.4015 45 1 1.6468 -0.4940 6.7086 46 1 2.6521 -1.3623 5.5343 47 1 0.8744 0.9469 4.6638 48 1 2.5060 1.2304 5.3210 49 1 1.7083 2.4835 2.2773 50 1 3.1826 4.3147 1.5436 51 1 6.5503 2.2631 2.8376 52 1 5.1764 0.3752 3.6203 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157043150.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:37 Heat of formation + Delta-G solvation = 35.802221 kcal Electronic energy + Delta-G solvation = -28693.315358 eV Core-core repulsion = 25271.499895 eV Total energy + Delta-G solvation = -3421.815463 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.63500 -39.02939 -36.77079 -34.25585 -33.40639 -32.04568 -31.12262 -30.65497 -27.67670 -26.82264 -26.23824 -25.33054 -24.58466 -23.18491 -22.49403 -22.21618 -20.65357 -19.38939 -17.84495 -16.85223 -16.37436 -16.17943 -15.72515 -15.62213 -15.16397 -14.64763 -14.31797 -14.16284 -13.82722 -13.65148 -13.49685 -13.21467 -12.99153 -12.92490 -12.65317 -12.41054 -12.25367 -11.97673 -11.74387 -11.43050 -11.33299 -11.07858 -10.88986 -10.82953 -10.77762 -10.69053 -10.54902 -10.40135 -10.26950 -10.22060 -9.96958 -9.56035 -9.32943 -9.18933 -8.98743 -8.86370 -8.58984 -8.27603 -7.88016 -5.92972 -3.92544 1.35578 1.48010 3.36843 3.41357 3.43695 3.88412 4.06420 4.50048 4.52773 4.58904 4.66496 4.67918 4.93822 5.02386 5.11306 5.17052 5.31412 5.36366 5.42047 5.42918 5.47372 5.51762 5.58355 5.70754 5.79782 5.83270 5.85140 5.88230 5.95558 5.96890 5.99319 6.05133 6.12817 6.18871 6.21854 6.32266 6.36043 6.36736 6.55232 6.70195 6.72702 6.86215 6.91335 6.91773 7.24034 7.30845 7.37518 7.43859 7.54379 7.75107 7.90978 8.07355 8.18621 8.52636 9.12682 9.69790 11.18677 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012673 B = 0.004627 C = 0.003719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.809827 B = 6049.799656 C = 7526.959521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.047 4.047 3 C -0.132 4.132 4 C 0.034 3.966 5 C -0.504 4.504 6 H 0.058 0.942 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.886 3.114 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.278 1.278 13 C 0.069 3.931 14 N -0.535 5.535 15 C 0.054 3.946 16 C -0.151 4.151 17 C -0.116 4.116 18 C -0.118 4.118 19 C -0.111 4.111 20 C 0.134 3.866 21 H 0.048 0.952 22 C -0.037 4.037 23 C -0.122 4.122 24 C 0.087 3.913 25 N -0.487 5.487 26 C 0.086 3.914 27 C -0.170 4.170 28 H 0.038 0.962 29 H 0.064 0.936 30 H 0.036 0.964 31 H 0.031 0.969 32 H 0.052 0.948 33 H 0.061 0.939 34 H 0.010 0.990 35 H 0.011 0.989 36 H 0.259 0.741 37 H 0.053 0.947 38 H 0.041 0.959 39 H 0.069 0.931 40 H 0.083 0.917 41 H 0.063 0.937 42 H 0.066 0.934 43 H 0.055 0.945 44 H 0.061 0.939 45 H 0.060 0.940 46 H 0.058 0.942 47 H 0.078 0.922 48 H 0.069 0.931 49 H 0.148 0.852 50 H 0.150 0.850 51 H 0.148 0.852 52 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.654 2.818 20.470 20.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.048 4.048 3 C -0.188 4.188 4 C -0.004 4.004 5 C -0.542 4.542 6 H 0.076 0.924 7 C -0.145 4.145 8 N -0.538 5.538 9 Si 0.715 3.285 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.204 1.204 13 C -0.058 4.058 14 N -0.260 5.260 15 C -0.073 4.073 16 C -0.190 4.190 17 C -0.154 4.154 18 C -0.156 4.156 19 C -0.149 4.149 20 C 0.026 3.974 21 H 0.066 0.934 22 C -0.046 4.046 23 C -0.142 4.142 24 C -0.070 4.070 25 N -0.196 5.196 26 C -0.070 4.070 27 C -0.190 4.190 28 H 0.057 0.943 29 H 0.083 0.917 30 H 0.054 0.946 31 H 0.050 0.950 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.028 0.972 35 H 0.029 0.971 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.059 0.941 39 H 0.087 0.913 40 H 0.101 0.899 41 H 0.081 0.919 42 H 0.085 0.915 43 H 0.074 0.926 44 H 0.080 0.920 45 H 0.078 0.922 46 H 0.076 0.924 47 H 0.097 0.903 48 H 0.088 0.912 49 H 0.166 0.834 50 H 0.168 0.832 51 H 0.166 0.834 52 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.221 3.814 19.940 20.338 hybrid contribution -0.320 -1.283 -0.591 1.448 sum -1.541 2.531 19.348 19.574 Atomic orbital electron populations 1.21887 0.95795 0.98958 1.01670 1.20526 0.95062 0.95620 0.93572 1.22255 0.99123 0.96620 1.00817 1.19137 0.95823 0.94973 0.90418 1.21181 1.30665 1.11811 0.90576 0.92355 1.25008 0.95432 0.95107 0.98996 1.69959 1.37311 1.23254 1.23311 0.86747 0.79145 0.79871 0.82778 1.20329 1.21484 1.20350 1.22335 0.97548 0.96231 0.89665 1.61742 1.09017 1.49789 1.05404 1.22180 0.93136 0.93008 0.98951 1.21989 1.02154 0.99408 0.95415 1.20554 0.98873 0.99417 0.96551 1.20576 0.99084 0.96461 0.99466 1.21452 1.02225 0.97438 0.93743 1.20241 0.91798 0.94144 0.91252 0.93428 1.20193 0.93249 0.95438 0.95673 1.22053 1.02247 0.93376 0.96475 1.22716 0.89024 0.98373 0.96893 1.67593 1.13149 1.25773 1.13086 1.22553 1.00012 0.89441 0.95041 1.21946 0.94051 1.00365 1.02675 0.94331 0.91709 0.94562 0.94984 0.92903 0.92081 0.97187 0.97101 0.93179 0.92876 0.94077 0.91315 0.89910 0.91854 0.91523 0.92603 0.91986 0.92177 0.92359 0.90319 0.91242 0.83417 0.83219 0.83437 0.85656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.32 7.95 37.16 0.30 -2.02 16 2 C -0.05 -0.92 0.61 -154.50 -0.09 -1.01 16 3 C -0.13 -2.50 6.35 37.16 0.24 -2.26 16 4 C 0.03 0.86 4.04 -27.88 -0.11 0.75 16 5 C -0.50 -13.85 7.23 -34.44 -0.25 -14.09 16 6 H 0.06 1.56 6.04 -52.49 -0.32 1.25 16 7 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -27.11 13.29 55.43 0.74 -26.38 16 9 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 C 0.07 1.16 3.69 -3.83 -0.01 1.14 16 14 N -0.54 -7.01 2.84 -229.28 -0.65 -7.66 16 15 C 0.05 0.63 4.45 -4.46 -0.02 0.61 16 16 C -0.15 -1.54 5.54 -27.29 -0.15 -1.69 16 17 C -0.12 -1.00 5.30 -29.42 -0.16 -1.15 16 18 C -0.12 -1.00 5.30 -29.42 -0.16 -1.16 16 19 C -0.11 -1.06 5.13 -27.32 -0.14 -1.20 16 20 C 0.13 1.55 1.30 -69.54 -0.09 1.46 16 21 H 0.05 0.58 6.33 -51.93 -0.33 0.25 16 22 C -0.04 -0.47 3.61 -104.32 -0.38 -0.85 16 23 C -0.12 -1.61 5.76 -39.44 -0.23 -1.83 16 24 C 0.09 1.19 10.97 -17.55 -0.19 1.00 16 25 N -0.49 -7.25 10.36 -13.25 -0.14 -7.39 16 26 C 0.09 1.13 11.18 -17.55 -0.20 0.93 16 27 C -0.17 -2.10 9.76 -39.44 -0.39 -2.49 16 28 H 0.04 0.64 7.81 -51.93 -0.41 0.24 16 29 H 0.06 1.36 6.29 -51.93 -0.33 1.04 16 30 H 0.04 0.61 5.22 -51.93 -0.27 0.34 16 31 H 0.03 0.65 7.81 -51.93 -0.41 0.24 16 32 H 0.05 1.10 6.62 -51.93 -0.34 0.76 16 33 H 0.06 0.99 3.44 -51.93 -0.18 0.81 16 34 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 37 H 0.05 0.95 7.06 -51.93 -0.37 0.58 16 38 H 0.04 0.71 7.57 -51.93 -0.39 0.32 16 39 H 0.07 0.74 6.58 -51.93 -0.34 0.40 16 40 H 0.08 1.08 5.07 -51.93 -0.26 0.82 16 41 H 0.06 0.72 6.99 -51.93 -0.36 0.36 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.06 0.51 7.51 -51.93 -0.39 0.12 16 45 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.06 0.51 7.52 -51.93 -0.39 0.12 16 47 H 0.08 0.78 7.08 -51.93 -0.37 0.41 16 48 H 0.07 0.65 7.72 -51.93 -0.40 0.25 16 49 H 0.15 1.91 6.16 -52.48 -0.32 1.59 16 50 H 0.15 1.78 8.06 -52.48 -0.42 1.36 16 51 H 0.15 1.56 8.06 -52.49 -0.42 1.13 16 52 H 0.13 1.29 8.05 -52.49 -0.42 0.87 16 LS Contribution 372.97 15.07 5.62 5.62 Total: -1.00 -30.12 372.97 -10.27 -40.39 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -8.69 Total: 1.00 kcal Atomic # 6 Polarization: -20.26 SS G_CDS: -2.13 Total: -22.39 kcal Atomic # 7 Polarization: -41.38 SS G_CDS: -0.05 Total: -41.43 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.12 -10.27 -40.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157043150.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.194 kcal (2) G-P(sol) polarization free energy of solvation -30.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds