Wall clock time and date at job start Tue Mar 31 2020 11:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53010 * 109.47140 * 2 1 4 4 C 1.53004 * 109.47148 * 240.00414 * 2 1 3 5 5 C 1.50696 * 109.46938 * 59.99717 * 4 2 1 6 6 H 1.07999 * 120.00924 * 0.02562 * 5 4 2 7 7 C 1.37881 * 119.99778 * 179.97438 * 5 4 2 8 8 N 1.31519 * 120.00034 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00218 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47066 * 60.00453 * 9 7 5 11 11 H 1.48495 * 109.47127 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.46990 * 300.00006 * 9 7 5 13 13 C 1.52997 * 109.47130 * 120.00001 * 2 1 3 14 14 N 1.46896 * 109.47418 * 305.98521 * 13 2 1 15 15 C 1.47998 * 110.99870 * 98.63940 * 14 13 2 16 16 C 1.50514 * 112.75159 * 84.83640 * 15 14 13 17 17 C 1.54311 * 108.45868 * 93.83404 * 16 15 14 18 18 C 1.45875 * 112.12167 * 281.34322 * 17 16 15 19 19 C 1.54308 * 112.18439 * 61.16347 * 18 17 16 20 20 C 1.48000 * 111.00376 * 227.36591 * 14 13 2 21 21 H 1.08998 * 108.80817 * 312.20630 * 20 14 13 22 22 C 1.50693 * 108.72704 * 70.54032 * 20 14 13 23 23 C 1.38645 * 120.79041 * 42.96438 * 22 20 14 24 24 C 1.38208 * 119.16192 * 179.75893 * 23 22 20 25 25 N 1.31866 * 120.76546 * 0.52506 * 24 23 22 26 26 C 1.31868 * 121.72500 * 359.74859 * 25 24 23 27 27 C 1.38210 * 120.76260 * 359.97438 * 26 25 24 28 28 H 1.09007 * 109.47050 * 330.31816 * 1 2 3 29 29 H 1.09003 * 109.47353 * 90.31281 * 1 2 3 30 30 H 1.08995 * 109.47393 * 210.31458 * 1 2 3 31 31 H 1.08993 * 109.46784 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.46738 * 300.00474 * 3 2 1 33 33 H 1.08997 * 109.46675 * 59.99776 * 3 2 1 34 34 H 1.09003 * 109.47079 * 179.97438 * 4 2 1 35 35 H 1.08996 * 109.46788 * 300.00073 * 4 2 1 36 36 H 0.97002 * 120.00231 * 180.02562 * 8 7 5 37 37 H 1.09001 * 109.46868 * 185.98556 * 13 2 1 38 38 H 1.08996 * 109.46970 * 65.98869 * 13 2 1 39 39 H 1.09005 * 108.81326 * 205.70256 * 15 14 13 40 40 H 1.08999 * 108.81375 * 324.08681 * 15 14 13 41 41 H 1.09005 * 109.71299 * 334.11380 * 16 15 14 42 42 H 1.08999 * 109.58942 * 213.49430 * 16 15 14 43 43 H 1.09007 * 108.93425 * 160.68903 * 17 16 15 44 44 H 1.08999 * 108.93576 * 41.99932 * 17 16 15 45 45 H 1.08998 * 108.94308 * 181.86483 * 18 17 16 46 46 H 1.09000 * 108.93674 * 300.47273 * 18 17 16 47 47 H 1.08997 * 109.63442 * 41.16610 * 19 18 17 48 48 H 1.09001 * 109.63218 * 161.56120 * 19 18 17 49 49 H 1.08004 * 120.41998 * 0.02562 * 23 22 20 50 50 H 1.08009 * 119.61954 * 180.29784 * 24 23 22 51 51 H 1.08001 * 119.61817 * 179.97438 * 26 25 24 52 52 H 1.07997 * 120.41199 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0107 -2.4797 6 1 0.9170 0.8676 -2.3807 7 6 1.8711 -0.4814 -3.7320 8 7 2.6273 -1.5507 -3.8527 9 14 1.2479 0.3988 -5.2572 10 1 1.7418 1.7992 -5.2571 11 1 1.7430 -0.3011 -6.4697 12 1 -0.2371 0.3976 -5.2573 13 6 2.0400 -0.7212 1.2492 14 7 1.4360 -0.1172 2.4443 15 6 0.2794 -0.9124 2.9136 16 6 0.6824 -2.0544 3.8074 17 6 0.5949 -1.5815 5.2737 18 6 1.7449 -0.7710 5.6590 19 6 1.8633 0.5128 4.8111 20 6 2.4603 0.1512 3.4783 21 1 3.0786 -0.7381 3.5997 22 6 3.3322 1.2883 3.0118 23 6 2.7769 2.4100 2.4154 24 6 3.6077 3.4353 2.0047 25 7 4.9138 3.3506 2.1653 26 6 5.4769 2.2969 2.7233 27 6 4.7093 1.2352 3.1637 28 1 -0.3633 0.8929 0.5089 29 1 -0.3634 -0.0056 -1.0277 30 1 -0.3634 -0.8871 0.5187 31 1 3.1299 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 3.1300 -0.7208 -1.2495 35 1 1.6766 -1.7488 -1.2494 36 1 2.8623 -1.8816 -4.7338 37 1 3.1247 -0.6293 1.3044 38 1 1.7668 -1.7751 1.1972 39 1 -0.3979 -0.2578 3.4621 40 1 -0.2459 -1.3140 2.0470 41 1 1.7050 -2.3559 3.5803 42 1 0.0066 -2.8955 3.6529 43 1 0.5433 -2.4545 5.9244 44 1 -0.3126 -0.9914 5.4015 45 1 1.6468 -0.4940 6.7086 46 1 2.6521 -1.3623 5.5343 47 1 0.8744 0.9469 4.6638 48 1 2.5060 1.2304 5.3210 49 1 1.7083 2.4835 2.2773 50 1 3.1826 4.3147 1.5436 51 1 6.5503 2.2631 2.8376 52 1 5.1764 0.3752 3.6203 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157043150.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:36 Heat of formation + Delta-G solvation = 20.401843 kcal Electronic energy + Delta-G solvation = -28693.983169 eV Core-core repulsion = 25271.499895 eV Total energy + Delta-G solvation = -3422.483273 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.65987 -40.03987 -38.21118 -35.34445 -34.75940 -33.79163 -32.16152 -31.57921 -29.26513 -28.38266 -27.72920 -26.39503 -25.88809 -24.33666 -24.14624 -23.21091 -21.41698 -20.37136 -19.45474 -18.29488 -17.85262 -17.38861 -16.70500 -16.66919 -16.57390 -16.09240 -15.48132 -15.32173 -15.06098 -14.73331 -14.60826 -14.44964 -14.25704 -14.12999 -13.94621 -13.76077 -13.56822 -13.24445 -13.17420 -12.77567 -12.67123 -12.51606 -12.43298 -12.23663 -12.07437 -11.92290 -11.83701 -11.74021 -11.57263 -11.43191 -11.39131 -10.96256 -10.85463 -10.66625 -10.50031 -10.35663 -10.20456 -9.72746 -9.01953 -8.13991 -6.20533 0.34661 0.45411 1.39277 1.41743 1.48832 2.42881 2.81860 3.04242 3.19659 3.60782 3.71975 3.80066 3.89499 4.05642 4.08906 4.23770 4.28133 4.30020 4.31206 4.37071 4.41441 4.50311 4.59829 4.62103 4.71198 4.75512 4.81592 4.86789 4.93360 4.97761 4.98669 5.08873 5.10742 5.17561 5.18292 5.24251 5.26764 5.30855 5.31262 5.38933 5.43422 5.49815 5.52792 5.56341 5.59656 5.68130 5.71505 5.91776 5.94232 5.96451 6.20125 6.38415 6.39385 6.94279 7.16187 7.46312 8.98122 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012673 B = 0.004627 C = 0.003719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.809827 B = 6049.799656 C = 7526.959521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.043 4.043 3 C -0.117 4.117 4 C 0.042 3.958 5 C -0.510 4.510 6 H 0.065 0.935 7 C -0.004 4.004 8 N -0.939 5.939 9 Si 0.954 3.046 10 H -0.270 1.270 11 H -0.288 1.288 12 H -0.265 1.265 13 C 0.086 3.914 14 N -0.532 5.532 15 C 0.055 3.945 16 C -0.148 4.148 17 C -0.112 4.112 18 C -0.115 4.115 19 C -0.104 4.104 20 C 0.139 3.861 21 H 0.044 0.956 22 C -0.043 4.043 23 C -0.129 4.129 24 C 0.075 3.925 25 N -0.514 5.514 26 C 0.077 3.923 27 C -0.174 4.174 28 H 0.061 0.939 29 H 0.035 0.965 30 H 0.051 0.949 31 H 0.010 0.990 32 H 0.031 0.969 33 H 0.094 0.906 34 H -0.028 1.028 35 H -0.018 1.018 36 H 0.259 0.741 37 H 0.037 0.963 38 H 0.031 0.969 39 H 0.087 0.913 40 H 0.068 0.932 41 H 0.048 0.952 42 H 0.071 0.929 43 H 0.065 0.935 44 H 0.071 0.929 45 H 0.076 0.924 46 H 0.054 0.946 47 H 0.081 0.919 48 H 0.074 0.926 49 H 0.153 0.847 50 H 0.163 0.837 51 H 0.169 0.831 52 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.045 3.685 22.444 22.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.044 4.044 3 C -0.173 4.173 4 C 0.004 3.996 5 C -0.548 4.548 6 H 0.083 0.917 7 C -0.201 4.201 8 N -0.580 5.580 9 Si 0.779 3.221 10 H -0.196 1.196 11 H -0.213 1.213 12 H -0.190 1.190 13 C -0.042 4.042 14 N -0.256 5.256 15 C -0.072 4.072 16 C -0.187 4.187 17 C -0.149 4.149 18 C -0.153 4.153 19 C -0.141 4.141 20 C 0.031 3.969 21 H 0.062 0.938 22 C -0.051 4.051 23 C -0.148 4.148 24 C -0.082 4.082 25 N -0.224 5.224 26 C -0.080 4.080 27 C -0.194 4.194 28 H 0.080 0.920 29 H 0.054 0.946 30 H 0.070 0.930 31 H 0.029 0.971 32 H 0.050 0.950 33 H 0.112 0.888 34 H -0.009 1.009 35 H 0.000 1.000 36 H 0.068 0.932 37 H 0.056 0.944 38 H 0.050 0.950 39 H 0.106 0.894 40 H 0.087 0.913 41 H 0.067 0.933 42 H 0.090 0.910 43 H 0.084 0.916 44 H 0.089 0.911 45 H 0.095 0.905 46 H 0.072 0.928 47 H 0.100 0.900 48 H 0.093 0.907 49 H 0.170 0.830 50 H 0.180 0.820 51 H 0.186 0.814 52 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -2.628 4.692 21.934 22.584 hybrid contribution 0.163 -1.586 -1.161 1.972 sum -2.465 3.106 20.773 21.148 Atomic orbital electron populations 1.21772 0.94337 1.00915 1.00338 1.20387 0.96094 0.95536 0.92356 1.22155 0.97604 0.96162 1.01374 1.19017 0.93323 0.94037 0.93191 1.21554 1.30069 1.11767 0.91428 0.91740 1.25907 0.95734 0.95892 1.02519 1.70108 1.38913 1.25018 1.23988 0.85668 0.79097 0.78713 0.78621 1.19564 1.21338 1.19026 1.21947 0.96571 0.95391 0.90310 1.61640 1.09471 1.49540 1.04960 1.22220 0.92399 0.93724 0.98839 1.21944 1.01272 0.99003 0.96513 1.20522 0.99290 0.99959 0.95144 1.20556 0.98879 0.95699 1.00144 1.21409 1.02192 0.98192 0.92347 1.20286 0.91309 0.93554 0.91755 0.93772 1.20427 0.93752 0.95603 0.95362 1.22073 1.02263 0.93531 0.96958 1.22999 0.89004 0.99141 0.97026 1.67605 1.13798 1.26864 1.14150 1.22976 1.01236 0.89232 0.94540 1.22199 0.94047 1.00796 1.02396 0.91982 0.94596 0.93013 0.97084 0.95034 0.88771 1.00921 0.99971 0.93247 0.94427 0.95042 0.89447 0.91325 0.93345 0.91045 0.91603 0.91058 0.90500 0.92777 0.90002 0.90727 0.82987 0.81989 0.81419 0.83693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.21 7.95 71.98 0.57 -3.64 16 2 C -0.04 -1.71 0.61 -52.18 -0.03 -1.74 16 3 C -0.12 -4.44 6.35 71.99 0.46 -3.98 16 4 C 0.04 2.22 4.04 29.85 0.12 2.34 16 5 C -0.51 -28.76 7.23 25.60 0.19 -28.58 16 6 H 0.06 3.49 6.04 -2.91 -0.02 3.48 16 7 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 8 N -0.94 -58.49 13.29 21.45 0.28 -58.20 16 9 Si 0.95 45.28 29.54 68.60 2.03 47.31 16 10 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 11 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 12 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 13 C 0.09 2.89 3.69 86.30 0.32 3.21 16 14 N -0.53 -13.14 2.84 -879.32 -2.50 -15.63 16 15 C 0.05 1.16 4.45 85.29 0.38 1.54 16 16 C -0.15 -2.72 5.54 30.23 0.17 -2.55 16 17 C -0.11 -1.55 5.30 28.85 0.15 -1.39 16 18 C -0.12 -1.58 5.30 28.85 0.15 -1.42 16 19 C -0.10 -1.68 5.13 30.21 0.15 -1.52 16 20 C 0.14 2.98 1.30 43.13 0.06 3.03 16 21 H 0.04 1.01 6.33 -2.39 -0.02 1.00 16 22 C -0.04 -1.04 3.61 -19.67 -0.07 -1.11 16 23 C -0.13 -3.23 5.76 22.36 0.13 -3.10 16 24 C 0.07 2.00 10.97 84.68 0.93 2.93 16 25 N -0.51 -15.11 10.36 -195.83 -2.03 -17.13 16 26 C 0.08 1.95 11.18 84.68 0.95 2.89 16 27 C -0.17 -4.11 9.76 22.36 0.22 -3.89 16 28 H 0.06 1.94 7.81 -2.38 -0.02 1.92 16 29 H 0.03 1.50 6.29 -2.39 -0.01 1.48 16 30 H 0.05 1.69 5.22 -2.39 -0.01 1.68 16 31 H 0.01 0.43 7.81 -2.39 -0.02 0.41 16 32 H 0.03 1.31 6.62 -2.39 -0.02 1.29 16 33 H 0.09 2.94 3.44 -2.39 -0.01 2.93 16 34 H -0.03 -1.65 8.14 -2.39 -0.02 -1.67 16 35 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 36 H 0.26 15.32 8.31 -92.71 -0.77 14.54 16 37 H 0.04 1.37 7.06 -2.39 -0.02 1.35 16 38 H 0.03 1.11 7.57 -2.39 -0.02 1.09 16 39 H 0.09 1.58 6.58 -2.38 -0.02 1.56 16 40 H 0.07 1.66 5.07 -2.39 -0.01 1.65 16 41 H 0.05 1.04 6.99 -2.38 -0.02 1.03 16 42 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 44 H 0.07 0.89 7.51 -2.39 -0.02 0.87 16 45 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 46 H 0.05 0.81 7.52 -2.39 -0.02 0.79 16 47 H 0.08 1.31 7.08 -2.39 -0.02 1.30 16 48 H 0.07 1.17 7.72 -2.39 -0.02 1.16 16 49 H 0.15 3.61 6.16 -2.91 -0.02 3.59 16 50 H 0.16 3.73 8.06 -2.91 -0.02 3.71 16 51 H 0.17 3.36 8.06 -2.91 -0.02 3.34 16 52 H 0.15 2.75 8.05 -2.91 -0.02 2.73 16 Total: -1.00 -67.23 372.97 3.98 -63.25 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: 0.89 Total: 17.17 kcal Atomic # 6 Polarization: -42.06 SS G_CDS: 5.30 Total: -36.76 kcal Atomic # 7 Polarization: -86.73 SS G_CDS: -4.24 Total: -90.97 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -67.23 3.98 -63.25 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157043150.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.656 kcal (2) G-P(sol) polarization free energy of solvation -67.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds