Wall clock time and date at job start Tue Mar 31 2020 11:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47470 * 2 1 4 4 C 1.52996 * 109.47092 * 239.99729 * 2 1 3 5 5 C 1.50697 * 109.47298 * 60.00145 * 4 2 1 6 6 H 1.08001 * 120.00015 * 359.97438 * 5 4 2 7 7 C 1.37876 * 120.00438 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99952 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00313 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47236 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47495 * 120.00064 * 9 7 5 12 12 H 1.48502 * 109.47228 * 240.00174 * 9 7 5 13 13 C 1.53005 * 109.46985 * 120.00059 * 2 1 3 14 14 N 1.46904 * 109.47018 * 303.26427 * 13 2 1 15 15 C 1.47630 * 111.00064 * 277.70162 * 14 13 2 16 16 C 1.50819 * 108.05061 * 150.34548 * 15 14 13 17 17 C 1.53825 * 111.62138 * 95.05920 * 16 15 14 18 18 C 1.54167 * 111.96535 * 319.03888 * 17 16 15 19 19 C 1.50746 * 112.61454 * 318.48755 * 18 17 16 20 20 C 1.39772 * 110.99723 * 148.80892 * 14 13 2 21 21 H 1.08995 * 109.02573 * 68.54196 * 20 14 13 22 22 C 1.50703 * 109.02481 * 309.64161 * 20 14 13 23 23 C 1.38656 * 120.78686 * 319.72232 * 22 20 14 24 24 C 1.38203 * 119.16047 * 179.79580 * 23 22 20 25 25 N 1.31867 * 120.76446 * 0.48818 * 24 23 22 26 26 C 1.31874 * 121.72491 * 359.73763 * 25 24 23 27 27 C 1.38203 * 120.76327 * 0.02936 * 26 25 24 28 28 H 1.09005 * 109.46861 * 300.00517 * 1 2 3 29 29 H 1.08997 * 109.47131 * 59.99622 * 1 2 3 30 30 H 1.08996 * 109.47466 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47208 * 162.74249 * 3 2 1 32 32 H 1.09009 * 109.46666 * 282.74374 * 3 2 1 33 33 H 1.08994 * 109.47026 * 42.74290 * 3 2 1 34 34 H 1.09003 * 109.47709 * 180.02562 * 4 2 1 35 35 H 1.09007 * 109.47191 * 300.00310 * 4 2 1 36 36 H 0.97003 * 120.00482 * 179.97438 * 8 7 5 37 37 H 1.08998 * 109.47076 * 63.26686 * 13 2 1 38 38 H 1.08998 * 109.46987 * 183.26813 * 13 2 1 39 39 H 1.09000 * 109.74506 * 269.98307 * 15 14 13 40 40 H 1.08997 * 109.74732 * 30.71116 * 15 14 13 41 41 H 1.09000 * 109.05362 * 334.50271 * 16 15 14 42 42 H 1.09005 * 108.99008 * 215.56669 * 16 15 14 43 43 H 1.09002 * 108.98106 * 198.40215 * 17 16 15 44 44 H 1.09002 * 108.98511 * 79.68221 * 17 16 15 45 45 H 1.09008 * 108.85504 * 197.68464 * 18 17 16 46 46 H 1.08998 * 108.85362 * 79.30344 * 18 17 16 47 47 H 1.09002 * 109.54679 * 333.15717 * 19 18 17 48 48 H 1.09000 * 109.62738 * 212.92564 * 19 18 17 49 49 H 1.08006 * 120.42044 * 359.97438 * 23 22 20 50 50 H 1.08005 * 119.61820 * 180.20691 * 24 23 22 51 51 H 1.08000 * 119.61529 * 179.97438 * 26 25 24 52 52 H 1.08006 * 120.41586 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.5377 -0.0110 -2.4797 6 1 0.9164 0.8669 -2.3807 7 6 1.8703 -0.4823 -3.7319 8 7 2.6263 -1.5516 -3.8526 9 14 1.2483 0.3986 -5.2572 10 1 0.4237 1.5657 -4.8531 11 1 2.4036 0.8643 -6.0657 12 1 0.4224 -0.5342 -6.0654 13 6 2.0399 -0.7213 1.2493 14 7 1.4869 -0.0758 2.4474 15 6 2.2746 1.1168 2.8172 16 6 1.3491 2.0968 3.4938 17 6 1.3964 1.9566 5.0249 18 6 1.4468 0.4807 5.4676 19 6 0.5232 -0.3977 4.6627 20 6 1.3088 -1.0025 3.4785 21 1 2.2855 -1.3329 3.8320 22 6 0.5519 -2.1915 2.9451 23 6 -0.5047 -2.0228 2.0632 24 6 -1.1727 -3.1370 1.5917 25 7 -0.8217 -4.3478 1.9786 26 6 0.1748 -4.5455 2.8194 27 6 0.8918 -3.4796 3.3290 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 3.0864 1.4579 0.3049 32 1 1.9474 1.8606 -1.0025 33 1 1.4497 2.0366 0.6974 34 1 3.1300 -0.7217 -1.2490 35 1 1.6765 -1.7490 -1.2492 36 1 2.8601 -1.8835 -4.7336 37 1 1.7252 -1.7644 1.2205 38 1 3.1283 -0.6708 1.2791 39 1 3.0739 0.8326 3.5015 40 1 2.6993 1.5698 1.9214 41 1 0.3298 1.9181 3.1515 42 1 1.6436 3.1099 3.2200 43 1 0.5091 2.4246 5.4514 44 1 2.2815 2.4700 5.4008 45 1 1.1648 0.4184 6.5188 46 1 2.4673 0.1143 5.3565 47 1 -0.3074 0.1974 4.2833 48 1 0.1392 -1.1998 5.2930 49 1 -0.8000 -1.0334 1.7465 50 1 -1.9946 -3.0143 0.9019 51 1 0.4330 -5.5520 3.1137 52 1 1.7067 -3.6480 4.0176 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157043294.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:39 Heat of formation + Delta-G solvation = 23.488970 kcal Electronic energy + Delta-G solvation = -28794.085937 eV Core-core repulsion = 25371.736532 eV Total energy + Delta-G solvation = -3422.349405 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.95918 -40.11415 -38.05134 -35.53845 -34.69639 -33.61116 -32.12386 -31.70283 -29.15347 -28.58359 -27.86650 -26.36244 -25.77427 -24.35193 -24.25880 -23.32369 -21.22809 -20.24979 -19.63368 -18.35504 -17.87212 -17.45383 -16.69642 -16.53345 -16.23389 -16.09337 -15.68215 -15.46681 -15.04080 -14.87789 -14.71822 -14.46323 -14.35061 -14.13597 -14.03566 -13.77188 -13.42062 -13.12795 -12.95505 -12.80484 -12.62977 -12.57666 -12.32470 -12.24654 -12.10722 -12.05393 -11.90633 -11.61873 -11.54078 -11.31582 -11.13121 -11.03128 -10.86315 -10.60959 -10.50370 -10.35432 -10.20560 -9.90304 -9.03140 -8.12996 -6.19618 0.29567 0.39362 1.39672 1.41072 1.52860 2.43909 2.90685 2.98136 3.21295 3.52926 3.67171 3.94213 3.95856 4.02281 4.14232 4.23209 4.25851 4.28911 4.32663 4.38164 4.40954 4.48289 4.58531 4.68086 4.72056 4.79797 4.81234 4.90949 4.95220 4.97293 5.01712 5.05967 5.06425 5.10516 5.19350 5.24590 5.28018 5.29420 5.36266 5.39150 5.45596 5.54158 5.55216 5.58659 5.62326 5.68033 5.73116 5.87701 5.92473 5.96598 6.22995 6.39151 6.60834 6.96223 7.11366 7.47788 8.99584 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012460 B = 0.004795 C = 0.003763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.656652 B = 5838.436898 C = 7439.531222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.042 4.042 3 C -0.124 4.124 4 C 0.043 3.957 5 C -0.507 4.507 6 H 0.068 0.932 7 C -0.005 4.005 8 N -0.940 5.940 9 Si 0.954 3.046 10 H -0.258 1.258 11 H -0.283 1.283 12 H -0.285 1.285 13 C 0.079 3.921 14 N -0.536 5.536 15 C 0.049 3.951 16 C -0.113 4.113 17 C -0.113 4.113 18 C -0.116 4.116 19 C -0.097 4.097 20 C 0.149 3.851 21 H 0.033 0.967 22 C -0.042 4.042 23 C -0.153 4.153 24 C 0.075 3.925 25 N -0.517 5.517 26 C 0.082 3.918 27 C -0.176 4.176 28 H 0.074 0.926 29 H 0.035 0.965 30 H 0.038 0.962 31 H 0.041 0.959 32 H 0.041 0.959 33 H 0.072 0.928 34 H -0.022 1.022 35 H -0.025 1.025 36 H 0.258 0.742 37 H 0.052 0.948 38 H 0.019 0.981 39 H 0.039 0.961 40 H 0.088 0.912 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.066 0.934 44 H 0.063 0.937 45 H 0.072 0.928 46 H 0.052 0.948 47 H 0.074 0.926 48 H 0.071 0.929 49 H 0.156 0.844 50 H 0.158 0.842 51 H 0.174 0.826 52 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.693 4.581 21.514 22.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.042 4.042 3 C -0.181 4.181 4 C 0.005 3.995 5 C -0.545 4.545 6 H 0.086 0.914 7 C -0.201 4.201 8 N -0.581 5.581 9 Si 0.779 3.221 10 H -0.182 1.182 11 H -0.209 1.209 12 H -0.211 1.211 13 C -0.048 4.048 14 N -0.260 5.260 15 C -0.077 4.077 16 C -0.151 4.151 17 C -0.150 4.150 18 C -0.154 4.154 19 C -0.135 4.135 20 C 0.039 3.961 21 H 0.050 0.950 22 C -0.050 4.050 23 C -0.172 4.172 24 C -0.081 4.081 25 N -0.227 5.227 26 C -0.075 4.075 27 C -0.196 4.196 28 H 0.092 0.908 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.091 0.909 34 H -0.004 1.004 35 H -0.006 1.006 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.038 0.962 39 H 0.058 0.942 40 H 0.106 0.894 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.085 0.915 44 H 0.081 0.919 45 H 0.090 0.910 46 H 0.071 0.929 47 H 0.093 0.907 48 H 0.089 0.911 49 H 0.173 0.827 50 H 0.175 0.825 51 H 0.191 0.809 52 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -4.513 3.934 21.003 21.839 hybrid contribution 1.373 0.081 -1.025 1.715 sum -3.141 4.015 19.978 20.618 Atomic orbital electron populations 1.21798 0.94420 1.00188 1.00369 1.20337 0.96297 0.95320 0.92272 1.21937 0.99094 0.95920 1.01104 1.18980 0.93607 0.93744 0.93170 1.21622 1.29858 1.11743 0.91256 0.91402 1.25908 0.95760 0.95865 1.02564 1.70128 1.39100 1.25072 1.23829 0.85561 0.78114 0.78885 0.79508 1.18194 1.20919 1.21093 1.22080 0.95502 0.97063 0.90159 1.58755 1.53314 1.09005 1.04889 1.22298 0.94567 0.90339 1.00484 1.21364 1.00534 0.98250 0.94926 1.21894 1.02151 0.95809 0.95179 1.21365 0.99233 0.95082 0.99714 1.21425 0.98564 0.99101 0.94400 1.19501 0.95963 0.88697 0.91956 0.94976 1.20519 0.94897 0.95070 0.94534 1.22554 0.96081 1.01710 0.96893 1.22971 0.99322 0.87915 0.97887 1.67622 1.16315 1.25984 1.12735 1.23083 0.91155 1.00430 0.92847 1.22242 1.02139 0.92661 1.02544 0.90771 0.94605 0.94312 0.94013 0.94020 0.90906 1.00369 1.00635 0.93323 0.92984 0.96218 0.94238 0.89418 0.91226 0.91328 0.91531 0.91859 0.90961 0.92875 0.90693 0.91055 0.82675 0.82466 0.80901 0.83034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.96 6.33 71.98 0.46 -3.51 16 2 C -0.04 -1.60 0.60 -52.18 -0.03 -1.63 16 3 C -0.12 -4.33 6.88 71.98 0.50 -3.84 16 4 C 0.04 2.21 4.04 29.85 0.12 2.33 16 5 C -0.51 -27.93 7.40 25.60 0.19 -27.74 16 6 H 0.07 3.58 5.83 -2.91 -0.02 3.56 16 7 C 0.00 -0.26 5.46 84.65 0.46 0.20 16 8 N -0.94 -58.21 13.29 21.45 0.28 -57.93 16 9 Si 0.95 44.71 29.54 68.60 2.03 46.74 16 10 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 11 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 12 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 13 C 0.08 2.66 3.53 86.30 0.30 2.97 16 14 N -0.54 -13.43 2.20 -891.44 -1.96 -15.40 16 15 C 0.05 1.08 4.29 85.45 0.37 1.45 16 16 C -0.11 -2.01 5.24 30.16 0.16 -1.85 16 17 C -0.11 -1.62 5.91 31.27 0.18 -1.44 16 18 C -0.12 -1.73 5.31 30.26 0.16 -1.56 16 19 C -0.10 -1.71 4.99 30.35 0.15 -1.56 16 20 C 0.15 3.34 1.72 45.94 0.08 3.42 16 21 H 0.03 0.74 7.43 -2.39 -0.02 0.72 16 22 C -0.04 -1.06 3.01 -19.67 -0.06 -1.12 16 23 C -0.15 -4.29 6.46 22.36 0.14 -4.14 16 24 C 0.07 2.24 11.12 84.68 0.94 3.18 16 25 N -0.52 -16.10 10.36 -195.84 -2.03 -18.13 16 26 C 0.08 2.12 11.18 84.68 0.95 3.06 16 27 C -0.18 -4.18 9.77 22.36 0.22 -3.96 16 28 H 0.07 2.22 6.51 -2.38 -0.02 2.20 16 29 H 0.03 1.39 6.62 -2.39 -0.02 1.38 16 30 H 0.04 1.42 5.93 -2.39 -0.01 1.41 16 31 H 0.04 1.40 6.73 -2.39 -0.02 1.38 16 32 H 0.04 1.66 6.25 -2.38 -0.01 1.64 16 33 H 0.07 2.11 6.61 -2.39 -0.02 2.10 16 34 H -0.02 -1.28 8.14 -2.39 -0.02 -1.30 16 35 H -0.02 -1.46 8.14 -2.38 -0.02 -1.48 16 36 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 37 H 0.05 1.93 5.38 -2.39 -0.01 1.91 16 38 H 0.02 0.70 7.85 -2.39 -0.02 0.68 16 39 H 0.04 0.84 6.66 -2.39 -0.02 0.82 16 40 H 0.09 2.17 3.88 -2.39 -0.01 2.16 16 41 H 0.07 1.38 7.26 -2.39 -0.02 1.36 16 42 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 43 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 45 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 46 H 0.05 0.85 6.58 -2.39 -0.02 0.83 16 47 H 0.07 1.41 7.11 -2.39 -0.02 1.40 16 48 H 0.07 1.19 8.01 -2.39 -0.02 1.17 16 49 H 0.16 4.30 4.42 -2.91 -0.01 4.28 16 50 H 0.16 4.29 8.06 -2.91 -0.02 4.26 16 51 H 0.17 3.41 8.06 -2.91 -0.02 3.38 16 52 H 0.15 2.75 8.06 -2.91 -0.02 2.73 16 Total: -1.00 -65.91 370.36 4.51 -61.41 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: 0.90 Total: 19.06 kcal Atomic # 6 Polarization: -41.04 SS G_CDS: 5.29 Total: -35.75 kcal Atomic # 7 Polarization: -87.75 SS G_CDS: -3.71 Total: -91.45 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -65.91 4.51 -61.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157043294.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.897 kcal (2) G-P(sol) polarization free energy of solvation -65.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds