Wall clock time and date at job start Tue Mar 31 2020 11:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53001 * 109.46695 * 2 1 4 4 C 1.52993 * 109.46986 * 239.99986 * 2 1 3 5 5 C 1.50697 * 109.47436 * 59.99825 * 4 2 1 6 6 H 1.08000 * 119.99527 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00156 * 179.97438 * 5 4 2 8 8 N 1.31518 * 119.99804 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 119.99962 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.47225 * 90.00054 * 9 7 5 11 11 H 1.48505 * 109.47025 * 210.00018 * 9 7 5 12 12 H 1.48499 * 109.47371 * 329.99840 * 9 7 5 13 13 C 1.52995 * 109.47078 * 119.99877 * 2 1 3 14 14 N 1.46499 * 109.47345 * 299.99897 * 13 2 1 15 15 C 1.39667 * 120.00370 * 180.02562 * 14 13 2 16 16 C 1.38990 * 120.03539 * 359.97438 * 15 14 13 17 17 C 1.38135 * 120.07496 * 179.97438 * 16 15 14 18 18 C 1.38177 * 120.14826 * 0.02680 * 17 16 15 19 19 C 1.38954 * 120.06874 * 359.97438 * 18 17 16 20 20 N 1.39669 * 120.03000 * 180.02562 * 19 18 17 21 21 C 1.46842 * 111.00580 * 359.97438 * 20 19 18 22 22 C 1.53039 * 109.52666 * 185.84280 * 21 20 19 23 23 C 1.53123 * 109.27546 * 300.81951 * 22 21 20 24 24 C 1.53120 * 109.21163 * 57.62218 * 23 22 21 25 25 C 1.46848 * 110.99772 * 124.20907 * 20 19 18 26 26 C 1.38753 * 120.04230 * 180.30171 * 15 14 13 27 27 H 1.08998 * 109.46927 * 299.99967 * 1 2 3 28 28 H 1.08988 * 109.47015 * 60.00061 * 1 2 3 29 29 H 1.09003 * 109.46506 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46537 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.47035 * 299.99512 * 3 2 1 32 32 H 1.08998 * 109.47406 * 60.00326 * 3 2 1 33 33 H 1.09003 * 109.47113 * 180.02562 * 4 2 1 34 34 H 1.09003 * 109.47385 * 299.99324 * 4 2 1 35 35 H 0.96999 * 119.99715 * 179.97438 * 8 7 5 36 36 H 1.08998 * 109.47343 * 180.02562 * 13 2 1 37 37 H 1.09000 * 109.47673 * 60.00069 * 13 2 1 38 38 H 0.97000 * 119.99908 * 0.02562 * 14 13 2 39 39 H 1.07997 * 119.96621 * 0.02562 * 16 15 14 40 40 H 1.08004 * 119.92566 * 180.02562 * 17 16 15 41 41 H 1.08001 * 119.96638 * 180.02562 * 18 17 16 42 42 H 1.09001 * 109.46203 * 65.82162 * 21 20 19 43 43 H 1.09006 * 109.45199 * 305.85123 * 21 20 19 44 44 H 1.08999 * 109.50420 * 180.88146 * 22 21 20 45 45 H 1.09001 * 109.50541 * 60.75500 * 22 21 20 46 46 H 1.09002 * 109.52319 * 177.56011 * 23 22 21 47 47 H 1.08995 * 109.52318 * 297.68693 * 23 22 21 48 48 H 1.09000 * 109.50719 * 62.32149 * 24 23 22 49 49 H 1.09003 * 109.50116 * 182.43702 * 24 23 22 50 50 H 1.08999 * 109.46555 * 294.17223 * 25 20 19 51 51 H 1.08998 * 109.46337 * 54.15431 * 25 20 19 52 52 H 1.08007 * 120.07028 * 359.97438 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9171 0.8674 -2.3805 7 6 1.8712 -0.4817 -3.7319 8 7 1.4332 0.1386 -4.8058 9 14 2.9452 -2.0005 -3.9033 10 1 2.0866 -3.2112 -3.9493 11 1 3.7375 -1.9077 -5.1558 12 1 3.8652 -2.0899 -2.7411 13 6 2.0401 -0.7212 1.2492 14 7 1.5518 -0.0306 2.4454 15 6 1.8896 -0.5074 3.7139 16 6 2.6886 -1.6374 3.8424 17 6 3.0237 -2.1094 5.0966 18 6 2.5656 -1.4607 6.2274 19 6 1.7664 -0.3304 6.1060 20 7 1.3043 0.3250 7.2496 21 6 1.7782 -0.3444 8.4676 22 6 1.1370 0.3101 9.6934 23 6 1.5098 1.7948 9.7267 24 6 1.0493 2.4592 8.4263 25 6 1.6914 1.7415 7.2368 26 6 1.4224 0.1424 4.8474 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3632 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6767 1.9564 0.8900 33 1 3.1301 -0.7216 -1.2490 34 1 1.6768 -1.7490 -1.2492 35 1 1.6681 -0.1924 -5.6867 36 1 3.1300 -0.7208 1.2495 37 1 1.6768 -1.7489 1.2493 38 1 0.9938 0.7579 2.3564 39 1 3.0486 -2.1466 2.9606 40 1 3.6450 -2.9874 5.1936 41 1 2.8297 -1.8320 7.2066 42 1 2.8625 -0.2543 8.5332 43 1 1.5028 -1.3986 8.4330 44 1 1.5010 -0.1769 10.5981 45 1 0.0533 0.2082 9.6354 46 1 1.0200 2.2745 10.5741 47 1 2.5905 1.8970 9.8250 48 1 -0.0358 2.3921 8.3477 49 1 1.3506 3.5068 8.4263 50 1 2.7761 1.8223 7.3080 51 1 1.3529 2.2021 6.3088 52 1 0.7974 1.0179 4.7504 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157332732.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:07 Heat of formation + Delta-G solvation = 12.155455 kcal Electronic energy + Delta-G solvation = -26442.925960 eV Core-core repulsion = 23020.085096 eV Total energy + Delta-G solvation = -3422.840863 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.43084 -38.67921 -37.28567 -34.68391 -33.28657 -32.23927 -31.43516 -29.83187 -28.53755 -27.51417 -26.53523 -25.93088 -24.60506 -23.82981 -22.44414 -21.68972 -20.79486 -19.78784 -18.24478 -17.67159 -16.90704 -16.02077 -15.74584 -15.60793 -15.07805 -14.65246 -14.56313 -14.38891 -14.14059 -13.89451 -13.80582 -13.42497 -13.33238 -13.14387 -13.05992 -12.73551 -12.48175 -12.28158 -12.16551 -11.65186 -11.38399 -11.31819 -11.22839 -11.15265 -11.09569 -11.00247 -10.77471 -10.67438 -10.62603 -10.44698 -10.12598 -9.84480 -9.75692 -9.51838 -9.49124 -9.00156 -8.54993 -7.92882 -7.18471 -6.05312 -4.02520 1.53815 1.75488 3.29324 3.37408 3.40086 3.44615 3.78550 4.04176 4.43240 4.43739 4.49838 4.58945 4.83481 4.98132 5.04345 5.13468 5.23014 5.27021 5.29947 5.33785 5.36163 5.39838 5.47345 5.51564 5.52182 5.55957 5.64831 5.69332 5.73223 5.75373 5.80697 5.94954 6.00777 6.08494 6.12005 6.17592 6.30381 6.33751 6.44720 6.57098 6.60843 6.63976 6.68150 6.88984 6.97132 7.01831 7.05236 7.18237 7.29222 7.35256 7.58138 7.77958 7.97906 8.52252 8.99102 9.57115 11.07508 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.028805 B = 0.002346 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.813619 B =11932.058266 C =12597.143266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.061 4.061 3 C -0.127 4.127 4 C -0.002 4.002 5 C -0.510 4.510 6 H 0.078 0.922 7 C 0.065 3.935 8 N -0.903 5.903 9 Si 0.876 3.124 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.266 1.266 13 C 0.130 3.870 14 N -0.736 5.736 15 C 0.248 3.752 16 C -0.223 4.223 17 C -0.048 4.048 18 C -0.239 4.239 19 C 0.154 3.846 20 N -0.489 5.489 21 C 0.053 3.947 22 C -0.119 4.119 23 C -0.123 4.123 24 C -0.120 4.120 25 C 0.059 3.941 26 C -0.224 4.224 27 H 0.032 0.968 28 H 0.071 0.929 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.071 0.929 32 H 0.032 0.968 33 H 0.017 0.983 34 H 0.013 0.987 35 H 0.262 0.738 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.399 0.601 39 H 0.119 0.881 40 H 0.116 0.884 41 H 0.117 0.883 42 H 0.043 0.957 43 H 0.082 0.918 44 H 0.068 0.932 45 H 0.071 0.929 46 H 0.064 0.936 47 H 0.059 0.941 48 H 0.072 0.928 49 H 0.069 0.931 50 H 0.041 0.959 51 H 0.082 0.918 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.457 0.873 28.311 28.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.061 4.061 3 C -0.185 4.185 4 C -0.040 4.040 5 C -0.548 4.548 6 H 0.096 0.904 7 C -0.136 4.136 8 N -0.543 5.543 9 Si 0.704 3.296 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.191 1.191 13 C 0.007 3.993 14 N -0.364 5.364 15 C 0.141 3.859 16 C -0.246 4.246 17 C -0.067 4.067 18 C -0.262 4.262 19 C 0.056 3.944 20 N -0.205 5.205 21 C -0.074 4.074 22 C -0.157 4.157 23 C -0.161 4.161 24 C -0.157 4.157 25 C -0.066 4.066 26 C -0.249 4.249 27 H 0.051 0.949 28 H 0.090 0.910 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.090 0.910 32 H 0.051 0.949 33 H 0.035 0.965 34 H 0.031 0.969 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.235 0.765 39 H 0.137 0.863 40 H 0.134 0.866 41 H 0.135 0.865 42 H 0.062 0.938 43 H 0.101 0.899 44 H 0.087 0.913 45 H 0.090 0.910 46 H 0.083 0.917 47 H 0.078 0.922 48 H 0.091 0.909 49 H 0.088 0.912 50 H 0.059 0.941 51 H 0.101 0.899 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 1.009 0.798 27.989 28.018 hybrid contribution 1.099 -0.617 -0.372 1.314 sum 2.108 0.181 27.617 27.698 Atomic orbital electron populations 1.21759 0.94831 1.01183 1.00744 1.20640 0.95806 0.95874 0.93802 1.21753 1.00305 0.95683 1.00729 1.19592 0.96159 0.95449 0.92761 1.21081 1.31785 1.13335 0.88622 0.90428 1.25017 0.95753 0.96784 0.96002 1.69905 1.45923 1.40564 0.97874 0.86843 0.81277 0.83920 0.77609 1.20390 1.21506 1.19067 1.21599 0.98055 0.95771 0.83923 1.44994 1.56456 1.32660 1.02245 1.17683 0.91392 0.91654 0.85192 1.20616 1.06531 0.99566 0.97928 1.20678 0.96601 0.97684 0.91763 1.20914 1.05518 1.01015 0.98743 1.18513 0.92221 0.94063 0.89570 1.58953 1.57270 1.03057 1.01197 1.22238 0.97665 0.98802 0.88692 1.21633 1.01705 0.95508 0.96848 1.21600 1.00975 0.95763 0.97721 1.21640 1.01533 0.98755 0.93818 1.22203 0.98226 0.86412 0.99759 1.20032 1.09757 1.05215 0.89938 0.94928 0.91030 0.93497 0.93525 0.91028 0.94949 0.96477 0.96906 0.92798 0.92662 0.92633 0.76530 0.86263 0.86579 0.86498 0.93835 0.89949 0.91298 0.90988 0.91692 0.92190 0.90936 0.91195 0.94068 0.89949 0.86376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.28 8.05 37.16 0.30 -1.98 16 2 C -0.06 -1.11 0.54 -154.51 -0.08 -1.19 16 3 C -0.13 -2.25 8.05 37.16 0.30 -1.95 16 4 C 0.00 -0.04 3.11 -27.89 -0.09 -0.13 16 5 C -0.51 -13.65 8.20 -34.44 -0.28 -13.94 16 6 H 0.08 2.21 5.92 -52.49 -0.31 1.90 16 7 C 0.07 1.85 5.47 -17.82 -0.10 1.75 16 8 N -0.90 -27.22 13.96 55.43 0.77 -26.44 16 9 Si 0.88 21.34 27.47 -169.99 -4.67 16.67 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 13 C 0.13 2.07 3.80 -4.04 -0.02 2.05 16 14 N -0.74 -10.46 5.13 -58.66 -0.30 -10.76 16 15 C 0.25 3.48 6.65 -83.82 -0.56 2.92 16 16 C -0.22 -3.05 9.31 -39.34 -0.37 -3.42 16 17 C -0.05 -0.58 10.03 -39.64 -0.40 -0.98 16 18 C -0.24 -2.83 8.82 -39.34 -0.35 -3.17 16 19 C 0.15 1.90 5.63 -83.82 -0.47 1.43 16 20 N -0.49 -5.14 4.70 -171.17 -0.80 -5.94 16 21 C 0.05 0.45 4.15 -3.84 -0.02 0.44 16 22 C -0.12 -0.82 6.10 -26.65 -0.16 -0.98 16 23 C -0.12 -0.79 6.00 -26.61 -0.16 -0.95 16 24 C -0.12 -0.87 6.10 -26.65 -0.16 -1.03 16 25 C 0.06 0.54 5.26 -3.83 -0.02 0.52 16 26 C -0.22 -2.94 9.00 -39.19 -0.35 -3.29 16 27 H 0.03 0.49 6.86 -51.93 -0.36 0.14 16 28 H 0.07 1.43 6.62 -51.94 -0.34 1.09 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.07 1.42 6.62 -51.93 -0.34 1.08 16 32 H 0.03 0.48 6.86 -51.93 -0.36 0.13 16 33 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 34 H 0.01 0.29 7.57 -51.93 -0.39 -0.10 16 35 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 36 H 0.06 0.88 7.95 -51.93 -0.41 0.47 16 37 H 0.06 0.89 7.95 -51.93 -0.41 0.48 16 38 H 0.40 5.38 6.17 -40.82 -0.25 5.13 16 39 H 0.12 1.61 6.72 -52.49 -0.35 1.26 16 40 H 0.12 1.16 8.06 -52.48 -0.42 0.73 16 41 H 0.12 1.17 5.80 -52.49 -0.30 0.86 16 42 H 0.04 0.37 7.73 -51.93 -0.40 -0.03 16 43 H 0.08 0.70 6.98 -51.93 -0.36 0.34 16 44 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 46 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 49 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 50 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 51 H 0.08 0.78 6.72 -51.93 -0.35 0.43 16 52 H 0.12 1.45 7.17 -52.48 -0.38 1.08 16 LS Contribution 386.75 15.07 5.83 5.83 Total: -1.00 -29.10 386.75 -11.25 -40.35 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -9.10 Total: 4.20 kcal Atomic # 6 Polarization: -20.92 SS G_CDS: -2.98 Total: -23.90 kcal Atomic # 7 Polarization: -42.82 SS G_CDS: -0.33 Total: -43.15 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.67 Total: 16.67 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -29.10 -11.25 -40.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157332732.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.505 kcal (2) G-P(sol) polarization free energy of solvation -29.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds