Wall clock time and date at job start Tue Mar 31 2020 11:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53001 * 109.46695 * 2 1 4 4 C 1.52993 * 109.46986 * 239.99986 * 2 1 3 5 5 C 1.50697 * 109.47436 * 59.99825 * 4 2 1 6 6 H 1.08000 * 119.99527 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00156 * 179.97438 * 5 4 2 8 8 N 1.31518 * 119.99804 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 119.99962 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.47225 * 90.00054 * 9 7 5 11 11 H 1.48505 * 109.47025 * 210.00018 * 9 7 5 12 12 H 1.48499 * 109.47371 * 329.99840 * 9 7 5 13 13 C 1.52995 * 109.47078 * 119.99877 * 2 1 3 14 14 N 1.46499 * 109.47345 * 299.99897 * 13 2 1 15 15 C 1.39667 * 120.00370 * 180.02562 * 14 13 2 16 16 C 1.38990 * 120.03539 * 359.97438 * 15 14 13 17 17 C 1.38135 * 120.07496 * 179.97438 * 16 15 14 18 18 C 1.38177 * 120.14826 * 0.02680 * 17 16 15 19 19 C 1.38954 * 120.06874 * 359.97438 * 18 17 16 20 20 N 1.39669 * 120.03000 * 180.02562 * 19 18 17 21 21 C 1.46842 * 111.00580 * 359.97438 * 20 19 18 22 22 C 1.53039 * 109.52666 * 185.84280 * 21 20 19 23 23 C 1.53123 * 109.27546 * 300.81951 * 22 21 20 24 24 C 1.53120 * 109.21163 * 57.62218 * 23 22 21 25 25 C 1.46848 * 110.99772 * 124.20907 * 20 19 18 26 26 C 1.38753 * 120.04230 * 180.30171 * 15 14 13 27 27 H 1.08998 * 109.46927 * 299.99967 * 1 2 3 28 28 H 1.08988 * 109.47015 * 60.00061 * 1 2 3 29 29 H 1.09003 * 109.46506 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46537 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.47035 * 299.99512 * 3 2 1 32 32 H 1.08998 * 109.47406 * 60.00326 * 3 2 1 33 33 H 1.09003 * 109.47113 * 180.02562 * 4 2 1 34 34 H 1.09003 * 109.47385 * 299.99324 * 4 2 1 35 35 H 0.96999 * 119.99715 * 179.97438 * 8 7 5 36 36 H 1.08998 * 109.47343 * 180.02562 * 13 2 1 37 37 H 1.09000 * 109.47673 * 60.00069 * 13 2 1 38 38 H 0.97000 * 119.99908 * 0.02562 * 14 13 2 39 39 H 1.07997 * 119.96621 * 0.02562 * 16 15 14 40 40 H 1.08004 * 119.92566 * 180.02562 * 17 16 15 41 41 H 1.08001 * 119.96638 * 180.02562 * 18 17 16 42 42 H 1.09001 * 109.46203 * 65.82162 * 21 20 19 43 43 H 1.09006 * 109.45199 * 305.85123 * 21 20 19 44 44 H 1.08999 * 109.50420 * 180.88146 * 22 21 20 45 45 H 1.09001 * 109.50541 * 60.75500 * 22 21 20 46 46 H 1.09002 * 109.52319 * 177.56011 * 23 22 21 47 47 H 1.08995 * 109.52318 * 297.68693 * 23 22 21 48 48 H 1.09000 * 109.50719 * 62.32149 * 24 23 22 49 49 H 1.09003 * 109.50116 * 182.43702 * 24 23 22 50 50 H 1.08999 * 109.46555 * 294.17223 * 25 20 19 51 51 H 1.08998 * 109.46337 * 54.15431 * 25 20 19 52 52 H 1.08007 * 120.07028 * 359.97438 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9171 0.8674 -2.3805 7 6 1.8712 -0.4817 -3.7319 8 7 1.4332 0.1386 -4.8058 9 14 2.9452 -2.0005 -3.9033 10 1 2.0866 -3.2112 -3.9493 11 1 3.7375 -1.9077 -5.1558 12 1 3.8652 -2.0899 -2.7411 13 6 2.0401 -0.7212 1.2492 14 7 1.5518 -0.0306 2.4454 15 6 1.8896 -0.5074 3.7139 16 6 2.6886 -1.6374 3.8424 17 6 3.0237 -2.1094 5.0966 18 6 2.5656 -1.4607 6.2274 19 6 1.7664 -0.3304 6.1060 20 7 1.3043 0.3250 7.2496 21 6 1.7782 -0.3444 8.4676 22 6 1.1370 0.3101 9.6934 23 6 1.5098 1.7948 9.7267 24 6 1.0493 2.4592 8.4263 25 6 1.6914 1.7415 7.2368 26 6 1.4224 0.1424 4.8474 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3632 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6767 1.9564 0.8900 33 1 3.1301 -0.7216 -1.2490 34 1 1.6768 -1.7490 -1.2492 35 1 1.6681 -0.1924 -5.6867 36 1 3.1300 -0.7208 1.2495 37 1 1.6768 -1.7489 1.2493 38 1 0.9938 0.7579 2.3564 39 1 3.0486 -2.1466 2.9606 40 1 3.6450 -2.9874 5.1936 41 1 2.8297 -1.8320 7.2066 42 1 2.8625 -0.2543 8.5332 43 1 1.5028 -1.3986 8.4330 44 1 1.5010 -0.1769 10.5981 45 1 0.0533 0.2082 9.6354 46 1 1.0200 2.2745 10.5741 47 1 2.5905 1.8970 9.8250 48 1 -0.0358 2.3921 8.3477 49 1 1.3506 3.5068 8.4263 50 1 2.7761 1.8223 7.3080 51 1 1.3529 2.2021 6.3088 52 1 0.7974 1.0179 4.7504 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157332732.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:06 Heat of formation + Delta-G solvation = -2.622921 kcal Electronic energy + Delta-G solvation = -26443.566798 eV Core-core repulsion = 23020.085096 eV Total energy + Delta-G solvation = -3423.481702 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.26961 -39.76810 -38.45774 -35.79511 -34.49810 -33.87812 -32.15065 -30.84422 -29.86505 -28.94940 -28.01390 -27.18063 -25.42073 -24.63747 -24.10498 -22.57255 -21.69401 -20.51121 -19.67127 -18.90585 -18.66182 -17.09234 -16.67496 -16.56019 -16.21285 -15.87571 -15.75105 -15.41318 -15.17693 -15.06232 -14.71388 -14.56070 -14.39005 -14.29419 -14.16378 -14.09562 -13.93345 -13.48642 -13.09576 -12.90840 -12.83386 -12.64419 -12.39558 -12.30481 -12.26352 -12.09829 -11.98888 -11.77043 -11.70529 -11.54132 -11.37232 -11.29307 -11.16430 -10.93540 -10.90048 -10.70834 -10.39244 -8.81760 -8.22490 -8.22365 -6.23179 0.58564 0.78616 1.36637 1.38516 1.48943 2.39149 2.49941 2.81978 3.11159 3.12733 3.83133 3.89894 3.94372 4.02134 4.07382 4.10233 4.17544 4.24962 4.35331 4.39614 4.44923 4.54606 4.62341 4.63524 4.67087 4.70527 4.73693 4.76252 4.83510 4.88861 4.92998 4.94724 5.00342 5.06779 5.07145 5.13996 5.21379 5.27334 5.29513 5.37879 5.39022 5.42924 5.45356 5.50379 5.53389 5.67448 5.71361 5.74077 5.77565 6.15470 6.35120 6.40590 6.54217 6.83872 6.91214 7.39352 8.93359 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.028805 B = 0.002346 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.813619 B =11932.058266 C =12597.143266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.057 4.057 3 C -0.121 4.121 4 C -0.002 4.002 5 C -0.504 4.504 6 H 0.046 0.954 7 C 0.001 3.999 8 N -0.953 5.953 9 Si 0.939 3.061 10 H -0.271 1.271 11 H -0.290 1.290 12 H -0.247 1.247 13 C 0.146 3.854 14 N -0.736 5.736 15 C 0.234 3.766 16 C -0.240 4.240 17 C -0.049 4.049 18 C -0.241 4.241 19 C 0.150 3.850 20 N -0.497 5.497 21 C 0.050 3.950 22 C -0.116 4.116 23 C -0.122 4.122 24 C -0.116 4.116 25 C 0.059 3.941 26 C -0.233 4.233 27 H 0.060 0.940 28 H 0.040 0.960 29 H 0.045 0.955 30 H 0.046 0.954 31 H 0.040 0.960 32 H 0.060 0.940 33 H 0.018 0.982 34 H 0.016 0.984 35 H 0.262 0.738 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.401 0.599 39 H 0.118 0.882 40 H 0.138 0.862 41 H 0.136 0.864 42 H 0.046 0.954 43 H 0.082 0.918 44 H 0.086 0.914 45 H 0.065 0.935 46 H 0.077 0.923 47 H 0.062 0.938 48 H 0.066 0.934 49 H 0.082 0.918 50 H 0.038 0.962 51 H 0.075 0.925 52 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.397 -0.125 31.523 31.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.057 4.057 3 C -0.179 4.179 4 C -0.040 4.040 5 C -0.542 4.542 6 H 0.065 0.935 7 C -0.195 4.195 8 N -0.595 5.595 9 Si 0.764 3.236 10 H -0.197 1.197 11 H -0.216 1.216 12 H -0.170 1.170 13 C 0.021 3.979 14 N -0.365 5.365 15 C 0.129 3.871 16 C -0.264 4.264 17 C -0.068 4.068 18 C -0.264 4.264 19 C 0.051 3.949 20 N -0.212 5.212 21 C -0.076 4.076 22 C -0.154 4.154 23 C -0.159 4.159 24 C -0.154 4.154 25 C -0.067 4.067 26 C -0.258 4.258 27 H 0.078 0.922 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.079 0.921 33 H 0.036 0.964 34 H 0.034 0.966 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.238 0.762 39 H 0.136 0.864 40 H 0.156 0.844 41 H 0.153 0.847 42 H 0.064 0.936 43 H 0.100 0.900 44 H 0.104 0.896 45 H 0.084 0.916 46 H 0.096 0.904 47 H 0.081 0.919 48 H 0.085 0.915 49 H 0.100 0.900 50 H 0.056 0.944 51 H 0.094 0.906 52 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.948 -0.197 31.252 31.313 hybrid contribution 0.747 -0.235 -1.258 1.482 sum 2.695 -0.432 29.994 30.118 Atomic orbital electron populations 1.21674 0.94585 1.01073 1.00604 1.20514 0.95961 0.95918 0.93329 1.21667 1.00213 0.95377 1.00616 1.19556 0.96048 0.95490 0.92860 1.21382 1.30243 1.12211 0.90337 0.93550 1.25919 0.97587 1.00206 0.95811 1.70060 1.48189 1.42790 0.98458 0.85818 0.79748 0.80003 0.78035 1.19651 1.21609 1.17034 1.21273 0.97944 0.95388 0.83258 1.44789 1.56969 1.32832 1.01886 1.17797 0.92076 0.92184 0.85072 1.20756 1.07145 0.99846 0.98618 1.20959 0.96425 0.98203 0.91255 1.21195 1.04875 1.00683 0.99598 1.18731 0.91879 0.94316 0.89978 1.58981 1.57246 1.03701 1.01319 1.22331 0.97951 0.98852 0.88502 1.21630 1.01181 0.95864 0.96684 1.21608 1.01268 0.95440 0.97606 1.21634 1.00996 0.99328 0.93463 1.22240 0.98156 0.85850 1.00417 1.20127 1.10042 1.05463 0.90169 0.92153 0.94041 0.93557 0.93532 0.94054 0.92106 0.96371 0.96572 0.92894 0.92577 0.92604 0.76222 0.86444 0.84422 0.84663 0.93572 0.89985 0.89588 0.91634 0.90426 0.91895 0.91494 0.89976 0.94372 0.90649 0.86094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.30 8.05 71.99 0.58 -3.72 16 2 C -0.06 -2.03 0.54 -52.18 -0.03 -2.06 16 3 C -0.12 -4.25 8.05 71.98 0.58 -3.67 16 4 C 0.00 -0.08 3.11 29.84 0.09 0.02 16 5 C -0.50 -27.58 8.20 25.60 0.21 -27.37 16 6 H 0.05 2.78 5.92 -2.91 -0.02 2.76 16 7 C 0.00 0.04 5.47 84.65 0.46 0.50 16 8 N -0.95 -59.28 13.96 21.45 0.30 -58.98 16 9 Si 0.94 44.02 27.47 68.60 1.88 45.90 16 10 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 11 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 12 H -0.25 -10.70 6.54 99.48 0.65 -10.04 16 13 C 0.15 4.40 3.80 86.38 0.33 4.73 16 14 N -0.74 -19.73 5.13 -339.50 -1.74 -21.48 16 15 C 0.23 6.24 6.65 38.20 0.25 6.49 16 16 C -0.24 -6.18 9.31 22.43 0.21 -5.97 16 17 C -0.05 -1.09 10.03 22.23 0.22 -0.87 16 18 C -0.24 -5.16 8.82 22.43 0.20 -4.97 16 19 C 0.15 3.44 5.63 38.19 0.22 3.65 16 20 N -0.50 -9.61 4.70 -695.47 -3.27 -12.87 16 21 C 0.05 0.75 4.15 86.33 0.36 1.11 16 22 C -0.12 -1.31 6.10 30.65 0.19 -1.12 16 23 C -0.12 -1.27 6.00 30.68 0.18 -1.08 16 24 C -0.12 -1.46 6.10 30.65 0.19 -1.27 16 25 C 0.06 0.99 5.26 86.33 0.45 1.44 16 26 C -0.23 -5.80 9.00 22.52 0.20 -5.60 16 27 H 0.06 1.77 6.86 -2.39 -0.02 1.75 16 28 H 0.04 1.69 6.62 -2.39 -0.02 1.68 16 29 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.04 1.68 6.62 -2.38 -0.02 1.67 16 32 H 0.06 1.76 6.86 -2.39 -0.02 1.74 16 33 H 0.02 0.80 7.20 -2.39 -0.02 0.79 16 34 H 0.02 0.71 7.57 -2.39 -0.02 0.69 16 35 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 36 H 0.06 1.69 7.95 -2.39 -0.02 1.67 16 37 H 0.06 1.69 7.95 -2.39 -0.02 1.67 16 38 H 0.40 10.13 6.17 -92.71 -0.57 9.56 16 39 H 0.12 3.00 6.72 -2.91 -0.02 2.98 16 40 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 41 H 0.14 2.34 5.80 -2.91 -0.02 2.32 16 42 H 0.05 0.67 7.73 -2.39 -0.02 0.65 16 43 H 0.08 1.22 6.98 -2.38 -0.02 1.20 16 44 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 45 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 46 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 47 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 48 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 49 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 50 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 51 H 0.08 1.35 6.72 -2.39 -0.02 1.33 16 52 H 0.12 2.85 7.17 -2.91 -0.02 2.83 16 Total: -1.00 -63.55 386.75 2.33 -61.22 By element: Atomic # 1 Polarization: 25.73 SS G_CDS: 0.26 Total: 25.99 kcal Atomic # 6 Polarization: -44.67 SS G_CDS: 4.90 Total: -39.78 kcal Atomic # 7 Polarization: -88.62 SS G_CDS: -4.71 Total: -93.33 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 1.88 Total: 45.90 kcal Total: -63.55 2.33 -61.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157332732.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.594 kcal (2) G-P(sol) polarization free energy of solvation -63.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds