Wall clock time and date at job start Tue Mar 31 2020 11:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52993 * 109.47144 * 2 1 4 4 H 1.09005 * 109.46082 * 305.25539 * 3 2 1 5 5 C 1.53035 * 109.46562 * 65.22324 * 3 2 1 6 6 C 1.53115 * 109.27844 * 179.19704 * 5 3 2 7 7 C 1.53125 * 109.16016 * 302.34493 * 6 5 3 8 8 C 1.53039 * 109.27645 * 57.65829 * 7 6 5 9 9 N 1.46843 * 109.46237 * 185.28221 * 3 2 1 10 10 C 1.46896 * 111.00477 * 54.13865 * 9 3 2 11 11 C 1.50699 * 109.47439 * 175.63730 * 10 9 3 12 12 C 1.38286 * 119.92215 * 90.00085 * 11 10 9 13 13 C 1.38109 * 120.07243 * 180.02562 * 12 11 10 14 14 C 1.38912 * 119.92553 * 0.02562 * 13 12 11 15 15 N 1.39667 * 120.07182 * 179.97438 * 14 13 12 16 16 C 1.46499 * 120.00526 * 359.97438 * 15 14 13 17 17 C 1.46499 * 119.99878 * 180.02562 * 15 14 13 18 18 C 1.50700 * 109.47262 * 89.99766 * 17 15 14 19 19 H 1.07996 * 119.99857 * 0.02562 * 18 17 15 20 20 C 1.37882 * 120.00210 * 180.02562 * 18 17 15 21 21 N 1.31513 * 119.99577 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00028 * 180.02562 * 20 18 17 23 23 H 1.48491 * 109.47085 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47169 * 120.00264 * 22 20 18 25 25 H 1.48502 * 109.46768 * 239.99957 * 22 20 18 26 26 C 1.38916 * 119.84901 * 0.25350 * 14 13 12 27 27 C 1.38097 * 119.92318 * 359.49077 * 26 14 13 28 28 H 1.09001 * 109.47186 * 54.19108 * 1 2 3 29 29 H 1.08997 * 109.47238 * 174.19326 * 1 2 3 30 30 H 1.08999 * 109.46939 * 294.19316 * 1 2 3 31 31 H 1.09001 * 109.46952 * 239.99498 * 2 1 3 32 32 H 1.09001 * 109.46669 * 119.99749 * 2 1 3 33 33 H 1.09001 * 109.50385 * 299.13639 * 5 3 2 34 34 H 1.08996 * 109.50497 * 59.21551 * 5 3 2 35 35 H 1.08997 * 109.52691 * 62.24824 * 6 5 3 36 36 H 1.09003 * 109.52136 * 182.37790 * 6 5 3 37 37 H 1.09001 * 109.50249 * 177.60072 * 7 6 5 38 38 H 1.08997 * 109.50292 * 297.67253 * 7 6 5 39 39 H 1.09000 * 109.45793 * 180.80653 * 8 7 6 40 40 H 1.08996 * 109.46087 * 60.83603 * 8 7 6 41 41 H 1.08998 * 109.46921 * 55.63741 * 10 9 3 42 42 H 1.09002 * 109.47372 * 295.64119 * 10 9 3 43 43 H 1.08005 * 119.96313 * 0.04776 * 12 11 10 44 44 H 1.08001 * 120.03699 * 179.97438 * 13 12 11 45 45 H 1.08993 * 109.47475 * 270.00180 * 16 15 14 46 46 H 1.09008 * 109.47010 * 29.99976 * 16 15 14 47 47 H 1.08999 * 109.47528 * 149.99893 * 16 15 14 48 48 H 1.09001 * 109.47104 * 329.99865 * 17 15 14 49 49 H 1.08998 * 109.47460 * 210.00097 * 17 15 14 50 50 H 0.97004 * 119.99538 * 179.97438 * 21 20 18 51 51 H 1.07998 * 120.03234 * 179.73012 * 26 14 13 52 52 H 1.08004 * 119.96083 * 180.25149 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6018 1.9826 -0.8393 5 6 1.6399 2.1248 1.3101 6 6 2.1696 3.5614 1.3140 7 6 3.6897 3.5372 1.1315 8 6 4.0304 2.8139 -0.1735 9 7 3.5029 1.4442 -0.1275 10 6 3.9298 0.6759 -1.3045 11 6 5.4242 0.7889 -1.4633 12 6 6.2546 -0.1305 -0.8490 13 6 7.6246 -0.0296 -0.9920 14 6 8.1680 0.9973 -1.7535 15 7 9.5530 1.1025 -1.8998 16 6 10.4344 0.1298 -1.2493 17 6 10.1245 2.1864 -2.7028 18 6 10.3797 3.3828 -1.8227 19 1 10.1406 3.3400 -0.7704 20 6 10.9185 4.5322 -2.3609 21 7 11.2092 4.5846 -3.6425 22 14 11.2355 6.0150 -1.2699 23 1 10.8244 5.7021 0.1223 24 1 12.6823 6.3487 -1.2962 25 1 10.4513 7.1732 -1.7687 26 6 7.3311 1.9225 -2.3644 27 6 5.9619 1.8126 -2.2216 28 1 -0.3633 0.6013 -0.8334 29 1 -0.3633 -1.0224 -0.1040 30 1 -0.3633 0.4212 0.9374 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 0.5535 2.1373 1.3968 34 1 2.0659 1.5770 2.1506 35 1 1.7135 4.1201 0.4968 36 1 1.9233 4.0378 2.2630 37 1 4.0677 4.5587 1.0908 38 1 4.1485 3.0126 1.9696 39 1 5.1126 2.7823 -0.2993 40 1 3.5828 3.3475 -1.0119 41 1 3.4390 1.0711 -2.1939 42 1 3.6565 -0.3712 -1.1737 43 1 5.8314 -0.9286 -0.2570 44 1 8.2726 -0.7477 -0.5117 45 1 10.6958 0.4857 -0.2528 46 1 9.9217 -0.8289 -1.1698 47 1 11.3416 0.0086 -1.8413 48 1 9.4261 2.4597 -3.4938 49 1 11.0634 1.8544 -3.1458 50 1 11.5880 5.3933 -4.0212 51 1 7.7507 2.7246 -2.9535 52 1 5.3105 2.5293 -2.6997 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157459528.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:05 Heat of formation + Delta-G solvation = 19.866406 kcal Electronic energy + Delta-G solvation = -27041.930566 eV Core-core repulsion = 23619.424074 eV Total energy + Delta-G solvation = -3422.506491 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.80497 -38.62066 -35.90252 -34.08984 -33.53368 -32.59724 -30.46297 -29.64752 -29.25928 -27.79414 -26.31588 -24.52511 -24.35328 -23.13596 -21.70086 -21.53416 -20.79108 -19.66602 -19.47006 -16.64076 -16.46250 -16.10460 -15.34193 -15.21134 -15.02141 -14.53330 -14.23894 -14.05117 -13.95921 -13.67352 -13.44721 -13.37470 -13.15975 -12.94125 -12.85403 -12.55754 -12.15654 -11.94589 -11.88839 -11.66326 -11.59282 -11.45431 -11.25623 -11.18091 -11.00208 -10.89058 -10.75041 -10.68791 -10.64979 -10.26343 -10.21448 -10.07461 -9.85113 -9.73459 -8.81139 -8.51378 -8.25266 -8.11708 -6.45639 -6.01851 -4.17682 2.11411 2.23378 3.24764 3.32945 3.38244 3.96458 4.15877 4.41024 4.57082 4.68002 4.73296 4.89869 5.00968 5.12279 5.20931 5.21025 5.24024 5.31668 5.36372 5.45117 5.56363 5.59692 5.62973 5.65027 5.70500 5.78117 5.80773 5.81882 5.91843 5.93611 5.96686 6.00853 6.05868 6.11351 6.13353 6.17211 6.30475 6.31362 6.37552 6.41991 6.44410 6.65920 6.94996 7.03124 7.19050 7.21812 7.29007 7.29962 7.38562 7.61040 7.80942 8.15466 8.26786 8.48959 8.91805 9.49169 10.95051 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.015267 B = 0.003255 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.628020 B = 8601.282586 C = 9805.291848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C 0.085 3.915 4 H 0.035 0.965 5 C -0.110 4.110 6 C -0.121 4.121 7 C -0.117 4.117 8 C 0.053 3.947 9 N -0.528 5.528 10 C 0.109 3.891 11 C -0.171 4.171 12 C -0.052 4.052 13 C -0.223 4.223 14 C 0.242 3.758 15 N -0.616 5.616 16 C 0.100 3.900 17 C 0.249 3.751 18 C -0.529 4.529 19 H 0.060 0.940 20 C 0.061 3.939 21 N -0.896 5.896 22 Si 0.895 3.105 23 H -0.272 1.272 24 H -0.283 1.283 25 H -0.283 1.283 26 C -0.188 4.188 27 C -0.067 4.067 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.055 0.945 36 H 0.060 0.940 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.091 0.909 40 H 0.026 0.974 41 H 0.030 0.970 42 H 0.077 0.923 43 H 0.109 0.891 44 H 0.113 0.887 45 H 0.040 0.960 46 H 0.053 0.947 47 H 0.060 0.940 48 H 0.035 0.965 49 H 0.030 0.970 50 H 0.263 0.737 51 H 0.131 0.869 52 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.054 -8.117 6.771 20.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.023 4.023 4 H 0.053 0.947 5 C -0.148 4.148 6 C -0.159 4.159 7 C -0.155 4.155 8 C -0.075 4.075 9 N -0.253 5.253 10 C -0.017 4.017 11 C -0.174 4.174 12 C -0.071 4.071 13 C -0.246 4.246 14 C 0.135 3.865 15 N -0.322 5.322 16 C -0.044 4.044 17 C 0.129 3.871 18 C -0.568 4.568 19 H 0.078 0.922 20 C -0.141 4.141 21 N -0.535 5.535 22 Si 0.723 3.277 23 H -0.197 1.197 24 H -0.209 1.209 25 H -0.209 1.209 26 C -0.210 4.210 27 C -0.087 4.087 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.109 0.891 40 H 0.044 0.956 41 H 0.048 0.952 42 H 0.095 0.905 43 H 0.127 0.873 44 H 0.131 0.869 45 H 0.059 0.941 46 H 0.072 0.928 47 H 0.079 0.921 48 H 0.053 0.947 49 H 0.048 0.952 50 H 0.073 0.927 51 H 0.149 0.851 52 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -17.526 -8.198 7.006 20.578 hybrid contribution 0.052 1.433 -0.176 1.445 sum -17.474 -6.765 6.830 19.944 Atomic orbital electron populations 1.21796 0.95877 1.01478 1.01721 1.21661 0.95291 0.96196 1.02797 1.21656 0.87955 0.95716 0.96980 0.94680 1.21641 0.99788 0.95696 0.97645 1.21593 0.96385 0.96664 1.01262 1.21588 0.95450 0.99989 0.98469 1.22181 1.01720 0.87576 0.96021 1.62021 1.08840 1.13985 1.40422 1.20875 0.92278 0.98215 0.90374 1.19156 0.93810 0.99441 1.04949 1.20478 0.92375 0.97463 0.96773 1.20568 0.95172 1.01635 1.07224 1.17936 0.84201 0.92454 0.91902 1.47086 1.01562 1.30304 1.53206 1.21456 0.94013 0.91504 0.97398 1.19299 0.93847 0.83613 0.90343 1.21614 1.41644 0.97644 0.95896 0.92216 1.24964 0.95383 0.98701 0.95068 1.69941 1.43619 1.28479 1.11432 0.86477 0.77858 0.82530 0.80849 1.19688 1.20949 1.20854 1.20841 0.92604 1.01690 1.05867 1.20667 0.94382 0.96417 0.97231 0.92979 0.92764 0.92594 0.91618 0.91169 0.91851 0.91210 0.92601 0.92161 0.91764 0.91208 0.89053 0.95572 0.95222 0.90492 0.87298 0.86930 0.94103 0.92800 0.92089 0.94682 0.95231 0.92721 0.85148 0.87584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.53 37.16 0.35 -0.78 16 2 C -0.12 -1.11 5.15 -26.73 -0.14 -1.25 16 3 C 0.09 0.90 1.90 -67.73 -0.13 0.77 16 4 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 5 C -0.11 -1.06 5.11 -26.65 -0.14 -1.20 16 6 C -0.12 -1.22 6.00 -26.61 -0.16 -1.38 16 7 C -0.12 -1.40 6.09 -26.65 -0.16 -1.56 16 8 C 0.05 0.71 4.76 -3.83 -0.02 0.69 16 9 N -0.53 -6.69 4.59 -228.13 -1.05 -7.74 16 10 C 0.11 1.42 4.60 -4.98 -0.02 1.40 16 11 C -0.17 -2.65 4.38 -104.59 -0.46 -3.11 16 12 C -0.05 -0.81 9.69 -39.61 -0.38 -1.20 16 13 C -0.22 -3.90 9.21 -39.38 -0.36 -4.26 16 14 C 0.24 4.90 6.55 -83.79 -0.55 4.35 16 15 N -0.62 -13.22 2.99 -181.00 -0.54 -13.76 16 16 C 0.10 1.77 10.23 59.85 0.61 2.38 16 17 C 0.25 6.24 4.95 -5.19 -0.03 6.22 16 18 C -0.53 -14.48 9.39 -34.44 -0.32 -14.80 16 19 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 20 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 21 N -0.90 -25.68 13.29 55.43 0.74 -24.95 16 22 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 23 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 26 C -0.19 -3.78 9.21 -39.38 -0.36 -4.14 16 27 C -0.07 -1.15 7.71 -39.62 -0.31 -1.46 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.39 6.88 -51.93 -0.36 0.04 16 31 H 0.07 0.62 6.12 -51.93 -0.32 0.30 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.52 6.75 -51.93 -0.35 0.17 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.09 1.46 5.59 -51.93 -0.29 1.17 16 40 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.03 0.38 8.08 -51.93 -0.42 -0.04 16 42 H 0.08 0.92 6.31 -51.93 -0.33 0.59 16 43 H 0.11 1.49 8.06 -52.48 -0.42 1.07 16 44 H 0.11 1.79 6.14 -52.49 -0.32 1.46 16 45 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.05 0.81 6.20 -51.92 -0.32 0.49 16 47 H 0.06 1.03 7.89 -51.93 -0.41 0.62 16 48 H 0.04 0.93 6.21 -51.93 -0.32 0.61 16 49 H 0.03 0.78 7.89 -51.93 -0.41 0.37 16 50 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 51 H 0.13 2.91 6.15 -52.49 -0.32 2.59 16 52 H 0.11 1.66 8.04 -52.48 -0.42 1.24 16 LS Contribution 393.63 15.07 5.93 5.93 Total: -1.00 -28.31 393.63 -11.82 -40.14 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -9.21 Total: 1.77 kcal Atomic # 6 Polarization: -15.07 SS G_CDS: -2.67 Total: -17.74 kcal Atomic # 7 Polarization: -45.59 SS G_CDS: -0.85 Total: -46.45 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -28.31 -11.82 -40.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157459528.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.002 kcal (2) G-P(sol) polarization free energy of solvation -28.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds