Wall clock time and date at job start Tue Mar 31 2020 11:12:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52993 * 109.47144 * 2 1 4 4 H 1.09005 * 109.46082 * 305.25539 * 3 2 1 5 5 C 1.53035 * 109.46562 * 65.22324 * 3 2 1 6 6 C 1.53115 * 109.27844 * 179.19704 * 5 3 2 7 7 C 1.53125 * 109.16016 * 302.34493 * 6 5 3 8 8 C 1.53039 * 109.27645 * 57.65829 * 7 6 5 9 9 N 1.46843 * 109.46237 * 185.28221 * 3 2 1 10 10 C 1.46896 * 111.00477 * 54.13865 * 9 3 2 11 11 C 1.50699 * 109.47439 * 175.63730 * 10 9 3 12 12 C 1.38286 * 119.92215 * 90.00085 * 11 10 9 13 13 C 1.38109 * 120.07243 * 180.02562 * 12 11 10 14 14 C 1.38912 * 119.92553 * 0.02562 * 13 12 11 15 15 N 1.39667 * 120.07182 * 179.97438 * 14 13 12 16 16 C 1.46499 * 120.00526 * 359.97438 * 15 14 13 17 17 C 1.46499 * 119.99878 * 180.02562 * 15 14 13 18 18 C 1.50700 * 109.47262 * 89.99766 * 17 15 14 19 19 H 1.07996 * 119.99857 * 0.02562 * 18 17 15 20 20 C 1.37882 * 120.00210 * 180.02562 * 18 17 15 21 21 N 1.31513 * 119.99577 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00028 * 180.02562 * 20 18 17 23 23 H 1.48491 * 109.47085 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47169 * 120.00264 * 22 20 18 25 25 H 1.48502 * 109.46768 * 239.99957 * 22 20 18 26 26 C 1.38916 * 119.84901 * 0.25350 * 14 13 12 27 27 C 1.38097 * 119.92318 * 359.49077 * 26 14 13 28 28 H 1.09001 * 109.47186 * 54.19108 * 1 2 3 29 29 H 1.08997 * 109.47238 * 174.19326 * 1 2 3 30 30 H 1.08999 * 109.46939 * 294.19316 * 1 2 3 31 31 H 1.09001 * 109.46952 * 239.99498 * 2 1 3 32 32 H 1.09001 * 109.46669 * 119.99749 * 2 1 3 33 33 H 1.09001 * 109.50385 * 299.13639 * 5 3 2 34 34 H 1.08996 * 109.50497 * 59.21551 * 5 3 2 35 35 H 1.08997 * 109.52691 * 62.24824 * 6 5 3 36 36 H 1.09003 * 109.52136 * 182.37790 * 6 5 3 37 37 H 1.09001 * 109.50249 * 177.60072 * 7 6 5 38 38 H 1.08997 * 109.50292 * 297.67253 * 7 6 5 39 39 H 1.09000 * 109.45793 * 180.80653 * 8 7 6 40 40 H 1.08996 * 109.46087 * 60.83603 * 8 7 6 41 41 H 1.08998 * 109.46921 * 55.63741 * 10 9 3 42 42 H 1.09002 * 109.47372 * 295.64119 * 10 9 3 43 43 H 1.08005 * 119.96313 * 0.04776 * 12 11 10 44 44 H 1.08001 * 120.03699 * 179.97438 * 13 12 11 45 45 H 1.08993 * 109.47475 * 270.00180 * 16 15 14 46 46 H 1.09008 * 109.47010 * 29.99976 * 16 15 14 47 47 H 1.08999 * 109.47528 * 149.99893 * 16 15 14 48 48 H 1.09001 * 109.47104 * 329.99865 * 17 15 14 49 49 H 1.08998 * 109.47460 * 210.00097 * 17 15 14 50 50 H 0.97004 * 119.99538 * 179.97438 * 21 20 18 51 51 H 1.07998 * 120.03234 * 179.73012 * 26 14 13 52 52 H 1.08004 * 119.96083 * 180.25149 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6018 1.9826 -0.8393 5 6 1.6399 2.1248 1.3101 6 6 2.1696 3.5614 1.3140 7 6 3.6897 3.5372 1.1315 8 6 4.0304 2.8139 -0.1735 9 7 3.5029 1.4442 -0.1275 10 6 3.9298 0.6759 -1.3045 11 6 5.4242 0.7889 -1.4633 12 6 6.2546 -0.1305 -0.8490 13 6 7.6246 -0.0296 -0.9920 14 6 8.1680 0.9973 -1.7535 15 7 9.5530 1.1025 -1.8998 16 6 10.4344 0.1298 -1.2493 17 6 10.1245 2.1864 -2.7028 18 6 10.3797 3.3828 -1.8227 19 1 10.1406 3.3400 -0.7704 20 6 10.9185 4.5322 -2.3609 21 7 11.2092 4.5846 -3.6425 22 14 11.2355 6.0150 -1.2699 23 1 10.8244 5.7021 0.1223 24 1 12.6823 6.3487 -1.2962 25 1 10.4513 7.1732 -1.7687 26 6 7.3311 1.9225 -2.3644 27 6 5.9619 1.8126 -2.2216 28 1 -0.3633 0.6013 -0.8334 29 1 -0.3633 -1.0224 -0.1040 30 1 -0.3633 0.4212 0.9374 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 0.5535 2.1373 1.3968 34 1 2.0659 1.5770 2.1506 35 1 1.7135 4.1201 0.4968 36 1 1.9233 4.0378 2.2630 37 1 4.0677 4.5587 1.0908 38 1 4.1485 3.0126 1.9696 39 1 5.1126 2.7823 -0.2993 40 1 3.5828 3.3475 -1.0119 41 1 3.4390 1.0711 -2.1939 42 1 3.6565 -0.3712 -1.1737 43 1 5.8314 -0.9286 -0.2570 44 1 8.2726 -0.7477 -0.5117 45 1 10.6958 0.4857 -0.2528 46 1 9.9217 -0.8289 -1.1698 47 1 11.3416 0.0086 -1.8413 48 1 9.4261 2.4597 -3.4938 49 1 11.0634 1.8544 -3.1458 50 1 11.5880 5.3933 -4.0212 51 1 7.7507 2.7246 -2.9535 52 1 5.3105 2.5293 -2.6997 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157459528.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:03 Heat of formation + Delta-G solvation = 6.513557 kcal Electronic energy + Delta-G solvation = -27042.509589 eV Core-core repulsion = 23619.424074 eV Total energy + Delta-G solvation = -3423.085514 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.93628 -39.88401 -37.38842 -34.99737 -34.88626 -34.27432 -31.91682 -30.99764 -30.07592 -29.59938 -27.60292 -26.11839 -25.14363 -24.56240 -23.01607 -22.94801 -21.65146 -20.97353 -20.49688 -18.66191 -18.09053 -17.03769 -16.91632 -16.45990 -16.23949 -15.81169 -15.37558 -15.37241 -15.13767 -15.05168 -14.55625 -14.42178 -14.30967 -14.18063 -14.12867 -13.99546 -13.44793 -13.18450 -13.14111 -13.05815 -12.87308 -12.65897 -12.57358 -12.54199 -12.38375 -12.24516 -12.05833 -11.98346 -11.73555 -11.59910 -11.57548 -11.39867 -11.12015 -10.91039 -10.65822 -10.37204 -9.65429 -9.15378 -8.37205 -7.80350 -6.38557 0.69411 0.83060 1.34342 1.36008 1.48431 2.33059 2.62649 2.88751 3.04685 3.30434 3.87457 3.88190 3.98264 4.05998 4.08895 4.24175 4.24500 4.36672 4.39625 4.43766 4.48238 4.52750 4.59623 4.63119 4.70524 4.71680 4.80022 4.84965 4.87226 4.88780 4.94673 5.00487 5.03934 5.08290 5.11226 5.11568 5.17892 5.20277 5.25894 5.31397 5.33423 5.39926 5.46967 5.54412 5.58639 5.67066 5.69286 5.91455 6.06360 6.17457 6.22791 6.35485 6.49186 6.81988 6.93008 7.33304 8.81996 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.015267 B = 0.003255 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.628020 B = 8601.282586 C = 9805.291848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.118 4.118 3 C 0.084 3.916 4 H 0.031 0.969 5 C -0.106 4.106 6 C -0.118 4.118 7 C -0.116 4.116 8 C 0.055 3.945 9 N -0.531 5.531 10 C 0.112 3.888 11 C -0.157 4.157 12 C -0.048 4.048 13 C -0.217 4.217 14 C 0.214 3.786 15 N -0.632 5.632 16 C 0.100 3.900 17 C 0.266 3.734 18 C -0.539 4.539 19 H 0.047 0.953 20 C 0.013 3.987 21 N -0.926 5.926 22 Si 0.960 3.040 23 H -0.271 1.271 24 H -0.273 1.273 25 H -0.277 1.277 26 C -0.215 4.215 27 C -0.066 4.066 28 H 0.051 0.949 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.066 0.934 35 H 0.057 0.943 36 H 0.073 0.927 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.022 0.978 41 H 0.032 0.968 42 H 0.097 0.903 43 H 0.142 0.858 44 H 0.133 0.867 45 H 0.038 0.962 46 H 0.085 0.915 47 H 0.061 0.939 48 H 0.010 0.990 49 H 0.010 0.990 50 H 0.267 0.733 51 H 0.094 0.906 52 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.437 -9.225 8.734 24.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.156 4.156 3 C -0.024 4.024 4 H 0.049 0.951 5 C -0.144 4.144 6 C -0.156 4.156 7 C -0.154 4.154 8 C -0.073 4.073 9 N -0.256 5.256 10 C -0.014 4.014 11 C -0.159 4.159 12 C -0.067 4.067 13 C -0.240 4.240 14 C 0.110 3.890 15 N -0.340 5.340 16 C -0.043 4.043 17 C 0.145 3.855 18 C -0.578 4.578 19 H 0.065 0.935 20 C -0.187 4.187 21 N -0.566 5.566 22 Si 0.785 3.215 23 H -0.196 1.196 24 H -0.199 1.199 25 H -0.202 1.202 26 C -0.237 4.237 27 C -0.085 4.085 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.101 0.899 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.092 0.908 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.040 0.960 41 H 0.050 0.950 42 H 0.115 0.885 43 H 0.159 0.841 44 H 0.151 0.849 45 H 0.057 0.943 46 H 0.103 0.897 47 H 0.080 0.920 48 H 0.028 0.972 49 H 0.028 0.972 50 H 0.076 0.924 51 H 0.112 0.888 52 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -19.938 -9.332 8.984 23.776 hybrid contribution 0.666 1.736 -0.789 2.019 sum -19.272 -7.596 8.195 22.277 Atomic orbital electron populations 1.21769 0.94518 1.02159 1.02090 1.21631 0.96436 0.94852 1.02633 1.21765 0.86286 0.96984 0.97367 0.95111 1.21638 1.00933 0.95001 0.96828 1.21577 0.94618 0.97323 1.02053 1.21569 0.97126 0.99524 0.97188 1.22080 0.99888 0.88519 0.96841 1.62044 1.10489 1.13188 1.39904 1.20895 0.90141 0.99538 0.90859 1.19471 0.95565 0.97975 1.02919 1.20856 0.91655 0.97921 0.96248 1.20809 0.96286 1.00780 1.06078 1.18192 0.83619 0.93808 0.93431 1.46957 1.02599 1.30427 1.53997 1.21592 0.93989 0.91939 0.96807 1.18792 0.92327 0.84414 0.90006 1.21788 1.41652 0.98918 0.95456 0.93474 1.25771 0.95073 1.01459 0.96360 1.70042 1.44250 1.29421 1.12931 0.85469 0.78121 0.78984 0.78900 1.19572 1.19870 1.20235 1.20716 0.94164 1.01704 1.07146 1.20755 0.93161 0.97173 0.97424 0.92988 0.91902 0.91933 0.91763 0.91285 0.89915 0.91559 0.92453 0.90807 0.91929 0.91951 0.91989 0.95950 0.95000 0.88484 0.84064 0.84911 0.94331 0.89690 0.91979 0.97175 0.97156 0.92386 0.88784 0.86804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.53 71.98 0.69 -1.06 16 2 C -0.12 -1.79 5.15 30.59 0.16 -1.63 16 3 C 0.08 1.56 1.90 44.94 0.09 1.65 16 4 H 0.03 0.62 8.14 -2.38 -0.02 0.60 16 5 C -0.11 -1.75 5.11 30.64 0.16 -1.60 16 6 C -0.12 -2.12 6.00 30.67 0.18 -1.93 16 7 C -0.12 -2.66 6.09 30.65 0.19 -2.47 16 8 C 0.05 1.44 4.76 86.33 0.41 1.85 16 9 N -0.53 -12.42 4.59 -875.68 -4.02 -16.44 16 10 C 0.11 2.66 4.60 85.56 0.39 3.05 16 11 C -0.16 -4.65 4.38 -19.84 -0.09 -4.74 16 12 C -0.05 -1.39 9.69 22.25 0.22 -1.18 16 13 C -0.22 -7.28 9.21 22.40 0.21 -7.08 16 14 C 0.21 8.88 6.55 38.22 0.25 9.13 16 15 N -0.63 -28.11 2.99 -726.57 -2.17 -30.29 16 16 C 0.10 3.52 10.23 127.77 1.31 4.82 16 17 C 0.27 14.19 4.95 85.63 0.42 14.61 16 18 C -0.54 -30.79 9.39 25.60 0.24 -30.55 16 19 H 0.05 2.75 7.81 -2.91 -0.02 2.73 16 20 C 0.01 0.71 5.46 84.66 0.46 1.17 16 21 N -0.93 -54.87 13.29 21.45 0.28 -54.59 16 22 Si 0.96 44.67 29.54 68.60 2.03 46.70 16 23 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 24 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 25 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 26 C -0.21 -9.14 9.21 22.40 0.21 -8.93 16 27 C -0.07 -2.30 7.71 22.25 0.17 -2.13 16 28 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.06 0.66 6.88 -2.39 -0.02 0.64 16 31 H 0.06 0.99 6.12 -2.39 -0.01 0.98 16 32 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.08 1.07 6.75 -2.39 -0.02 1.06 16 34 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.06 2.00 5.59 -2.39 -0.01 1.98 16 40 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.03 0.76 8.08 -2.39 -0.02 0.74 16 42 H 0.10 1.96 6.31 -2.39 -0.02 1.95 16 43 H 0.14 3.26 8.06 -2.91 -0.02 3.24 16 44 H 0.13 3.86 6.14 -2.91 -0.02 3.85 16 45 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 46 H 0.08 2.42 6.20 -2.38 -0.01 2.40 16 47 H 0.06 2.13 7.89 -2.39 -0.02 2.11 16 48 H 0.01 0.59 6.21 -2.39 -0.01 0.58 16 49 H 0.01 0.58 7.89 -2.39 -0.02 0.56 16 50 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 51 H 0.09 4.63 6.15 -2.91 -0.02 4.61 16 52 H 0.11 3.68 8.04 -2.91 -0.02 3.66 16 Total: -1.00 -63.26 393.63 2.64 -60.61 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: 0.87 Total: 21.01 kcal Atomic # 6 Polarization: -32.66 SS G_CDS: 5.66 Total: -27.00 kcal Atomic # 7 Polarization: -95.41 SS G_CDS: -5.91 Total: -101.32 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -63.26 2.64 -60.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157459528.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.128 kcal (2) G-P(sol) polarization free energy of solvation -63.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds