Wall clock time and date at job start Tue Mar 31 2020 11:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.50554 * 2 1 4 4 C 1.53124 * 109.50316 * 239.88664 * 2 1 3 5 5 C 1.53125 * 109.16024 * 182.40294 * 4 2 1 6 6 H 1.08998 * 109.53179 * 177.61336 * 5 4 2 7 7 C 1.52992 * 109.50380 * 297.71206 * 5 4 2 8 8 C 1.53033 * 109.27628 * 57.65529 * 5 4 2 9 9 N 1.46855 * 109.52390 * 300.81659 * 8 5 4 10 10 C 1.46894 * 110.99811 * 185.84297 * 9 8 5 11 11 C 1.50696 * 109.47315 * 65.79410 * 10 9 8 12 12 C 1.38284 * 119.92230 * 269.72148 * 11 10 9 13 13 C 1.38105 * 120.07454 * 179.72711 * 12 11 10 14 14 C 1.38914 * 119.92327 * 0.54454 * 13 12 11 15 15 N 1.39676 * 120.07728 * 179.75012 * 14 13 12 16 16 C 1.46496 * 120.00339 * 179.97438 * 15 14 13 17 17 C 1.46509 * 119.99722 * 359.97438 * 15 14 13 18 18 C 1.50692 * 109.46991 * 89.99979 * 17 15 14 19 19 H 1.08004 * 120.00291 * 359.97438 * 18 17 15 20 20 C 1.37875 * 120.00324 * 179.97438 * 18 17 15 21 21 N 1.31520 * 119.99560 * 0.02562 * 20 18 17 22 22 Si 1.86791 * 120.00584 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47106 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47370 * 119.99948 * 22 20 18 25 25 H 1.48505 * 109.47424 * 239.99982 * 22 20 18 26 26 C 1.38914 * 119.84903 * 359.73294 * 14 13 12 27 27 C 1.38103 * 119.92263 * 359.97438 * 26 14 13 28 28 C 1.46850 * 111.19253 * 61.74635 * 9 8 5 29 29 H 1.09002 * 109.47153 * 299.91697 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.91888 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.91869 * 1 2 3 32 32 H 1.08996 * 109.52192 * 302.30778 * 4 2 1 33 33 H 1.09001 * 109.52366 * 62.50115 * 4 2 1 34 34 H 1.08997 * 109.47188 * 179.80297 * 7 5 4 35 35 H 1.09002 * 109.47455 * 299.80334 * 7 5 4 36 36 H 1.09001 * 109.47577 * 59.80252 * 7 5 4 37 37 H 1.08999 * 109.46211 * 180.80850 * 8 5 4 38 38 H 1.08999 * 109.45907 * 60.83085 * 8 5 4 39 39 H 1.09002 * 109.47040 * 185.79520 * 10 9 8 40 40 H 1.09001 * 109.47649 * 305.78874 * 10 9 8 41 41 H 1.07999 * 119.96610 * 359.97438 * 12 11 10 42 42 H 1.08004 * 120.04155 * 180.27499 * 13 12 11 43 43 H 1.08992 * 109.47197 * 89.99757 * 16 15 14 44 44 H 1.09002 * 109.47225 * 210.00069 * 16 15 14 45 45 H 1.09002 * 109.46775 * 329.99445 * 16 15 14 46 46 H 1.08995 * 109.46654 * 210.00204 * 17 15 14 47 47 H 1.08996 * 109.47075 * 330.00211 * 17 15 14 48 48 H 0.97002 * 119.99719 * 180.02562 * 21 20 18 49 49 H 1.07999 * 120.03250 * 179.97438 * 26 14 13 50 50 H 1.08001 * 119.95788 * 179.97438 * 27 26 14 51 51 H 1.09000 * 109.45313 * 178.24324 * 28 9 8 52 52 H 1.09000 * 109.46325 * 58.27473 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0412 -0.7242 -1.2486 5 6 3.5712 -0.7722 -1.2106 6 1 3.9401 -1.3236 -2.0754 7 6 4.1279 0.6526 -1.2378 8 6 4.0229 -1.4729 0.0727 9 7 3.5093 -0.7417 1.2381 10 6 4.0373 -1.3051 2.4877 11 6 5.5270 -1.0853 2.5479 12 6 6.3862 -2.0381 2.0320 13 6 7.7517 -1.8373 2.0804 14 6 8.2622 -0.6818 2.6583 15 7 9.6429 -0.4779 2.7137 16 6 10.1794 0.7415 3.3230 17 6 10.5545 -1.4835 2.1623 18 6 10.8216 -1.1776 0.7112 19 1 10.3582 -0.3201 0.2459 20 6 11.6574 -1.9923 -0.0227 21 7 12.2212 -3.0368 0.5437 22 14 11.9879 -1.6135 -1.8217 23 1 11.2389 -0.3935 -2.2164 24 1 13.4420 -1.3871 -2.0210 25 1 11.5460 -2.7584 -2.6580 26 6 7.3963 0.2706 3.1808 27 6 6.0317 0.0662 3.1236 28 6 2.0409 -0.7231 1.2482 29 1 -0.3633 0.5125 0.8907 30 1 -0.3633 -1.0277 -0.0015 31 1 -0.3634 0.5151 -0.8893 32 1 1.6452 -1.7395 -1.2685 33 1 1.7157 -0.1876 -2.1398 34 1 5.2169 0.6178 -1.2072 35 1 3.8058 1.1512 -2.1520 36 1 3.7575 1.2040 -0.3735 37 1 5.1121 -1.4961 0.1098 38 1 3.6374 -2.4924 0.0848 39 1 3.5629 -0.8133 3.3370 40 1 3.8260 -2.3738 2.5223 41 1 5.9889 -2.9384 1.5871 42 1 8.4222 -2.5797 1.6733 43 1 10.3453 0.5733 4.3870 44 1 11.1237 1.0016 2.8447 45 1 9.4683 1.5570 3.1906 46 1 11.4931 -1.4655 2.7162 47 1 10.1009 -2.4709 2.2480 48 1 12.8096 -3.6098 0.0275 49 1 7.7900 1.1698 3.6311 50 1 5.3580 0.8061 3.5299 51 1 1.6906 -0.2016 2.1389 52 1 1.6648 -1.7461 1.2548 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000158018875.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:23 Heat of formation + Delta-G solvation = 18.246372 kcal Electronic energy + Delta-G solvation = -27141.633294 eV Core-core repulsion = 23719.056552 eV Total energy + Delta-G solvation = -3422.576741 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.79193 -38.71169 -36.03676 -34.18165 -33.14672 -32.65866 -30.43205 -29.91803 -27.80123 -26.78315 -26.64378 -26.32670 -24.48464 -22.93908 -22.04630 -21.44550 -21.16877 -19.48732 -18.69742 -16.62058 -16.42927 -15.95621 -15.38328 -15.25698 -14.81749 -14.63379 -14.24908 -14.11004 -13.98014 -13.71755 -13.51127 -13.24926 -12.95637 -12.85698 -12.81027 -12.22874 -12.14913 -12.07550 -11.89653 -11.67587 -11.44095 -11.39738 -11.37025 -11.24631 -10.95317 -10.88030 -10.81208 -10.67802 -10.54322 -10.26335 -10.15450 -10.11128 -9.85374 -9.72486 -8.80543 -8.50933 -8.24082 -8.12413 -6.44384 -6.00876 -4.17253 2.13784 2.25974 3.25128 3.33345 3.38632 3.99872 4.17863 4.41708 4.59287 4.67040 4.74387 4.79978 5.03562 5.21587 5.22514 5.27709 5.34931 5.38973 5.42364 5.49373 5.55698 5.59964 5.65389 5.67372 5.74084 5.77141 5.80559 5.85643 5.94047 5.94778 5.99961 6.02514 6.04578 6.10148 6.21609 6.26634 6.30596 6.38140 6.42451 6.46089 6.59590 6.67769 6.96441 7.04905 7.16942 7.22967 7.26143 7.30543 7.40140 7.63511 7.81559 8.16173 8.28496 8.51201 8.92487 9.49690 10.95580 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014290 B = 0.003396 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.921096 B = 8242.751234 C = 9432.653682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.091 4.091 3 H 0.081 0.919 4 C -0.110 4.110 5 C -0.089 4.089 6 H 0.069 0.931 7 C -0.137 4.137 8 C 0.057 3.943 9 N -0.529 5.529 10 C 0.111 3.889 11 C -0.165 4.165 12 C -0.068 4.068 13 C -0.188 4.188 14 C 0.241 3.759 15 N -0.616 5.616 16 C 0.099 3.901 17 C 0.249 3.751 18 C -0.529 4.529 19 H 0.060 0.940 20 C 0.061 3.939 21 N -0.895 5.895 22 Si 0.895 3.105 23 H -0.272 1.272 24 H -0.283 1.283 25 H -0.282 1.282 26 C -0.222 4.222 27 C -0.052 4.052 28 C 0.061 3.939 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.054 0.946 35 H 0.041 0.959 36 H 0.068 0.932 37 H 0.088 0.912 38 H 0.026 0.974 39 H 0.072 0.928 40 H 0.031 0.969 41 H 0.106 0.894 42 H 0.130 0.870 43 H 0.035 0.965 44 H 0.066 0.934 45 H 0.055 0.945 46 H 0.029 0.971 47 H 0.035 0.965 48 H 0.263 0.737 49 H 0.112 0.888 50 H 0.108 0.892 51 H 0.070 0.930 52 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.887 5.079 1.751 20.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.109 4.109 3 H 0.099 0.901 4 C -0.148 4.148 5 C -0.108 4.108 6 H 0.087 0.913 7 C -0.195 4.195 8 C -0.071 4.071 9 N -0.253 5.253 10 C -0.015 4.015 11 C -0.168 4.168 12 C -0.087 4.087 13 C -0.210 4.210 14 C 0.134 3.866 15 N -0.322 5.322 16 C -0.045 4.045 17 C 0.129 3.871 18 C -0.568 4.568 19 H 0.078 0.922 20 C -0.141 4.141 21 N -0.535 5.535 22 Si 0.723 3.277 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.208 1.208 26 C -0.245 4.245 27 C -0.071 4.071 28 C -0.067 4.067 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.060 0.940 36 H 0.087 0.913 37 H 0.106 0.894 38 H 0.044 0.956 39 H 0.090 0.910 40 H 0.049 0.951 41 H 0.124 0.876 42 H 0.148 0.852 43 H 0.053 0.947 44 H 0.085 0.915 45 H 0.073 0.927 46 H 0.047 0.953 47 H 0.053 0.947 48 H 0.073 0.927 49 H 0.130 0.870 50 H 0.126 0.874 51 H 0.088 0.912 52 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -19.343 5.434 1.698 20.163 hybrid contribution 0.124 -0.742 -1.060 1.300 sum -19.218 4.692 0.638 19.793 Atomic orbital electron populations 1.21802 0.95406 1.01545 1.01609 1.21196 0.94554 1.00704 0.94475 0.90053 1.21679 0.95552 0.99997 0.97535 1.21156 0.94876 0.97688 0.97068 0.91278 1.21724 1.01011 0.95563 1.01169 1.22191 1.01450 0.93799 0.89627 1.61924 1.06572 1.54508 1.02259 1.20796 0.92537 0.96778 0.91420 1.19106 0.93407 0.97079 1.07188 1.20648 0.92780 0.97693 0.97605 1.20836 0.95115 0.98878 1.06170 1.17940 0.84079 0.92927 0.91621 1.47089 1.02497 1.21283 1.61336 1.21463 0.99336 0.87358 0.96384 1.19277 0.87875 0.86692 0.93244 1.21623 1.27780 1.11801 0.95626 0.92195 1.24963 0.95615 0.94892 0.98633 1.69945 1.31304 1.15561 1.36649 0.86481 0.77952 0.78459 0.84839 1.19683 1.20959 1.20848 1.20559 0.93152 1.00533 1.10302 1.20453 0.93937 0.95578 0.97117 1.22116 0.88037 0.98448 0.98098 0.92722 0.92995 0.92650 0.92596 0.92111 0.92732 0.93970 0.91272 0.89398 0.95624 0.90964 0.95077 0.87601 0.85210 0.94669 0.91511 0.92676 0.95251 0.94673 0.92726 0.86988 0.87420 0.91160 0.95456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.20 37.16 0.34 -0.76 16 2 C -0.09 -0.85 2.53 -90.54 -0.23 -1.08 16 3 H 0.08 0.83 6.58 -51.93 -0.34 0.49 16 4 C -0.11 -1.07 4.79 -26.60 -0.13 -1.20 16 5 C -0.09 -1.03 3.21 -90.54 -0.29 -1.32 16 6 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 7 C -0.14 -1.68 8.75 37.15 0.33 -1.35 16 8 C 0.06 0.73 4.60 -3.83 -0.02 0.72 16 9 N -0.53 -6.52 3.93 -236.12 -0.93 -7.45 16 10 C 0.11 1.43 5.12 -4.98 -0.03 1.40 16 11 C -0.16 -2.55 4.88 -104.59 -0.51 -3.06 16 12 C -0.07 -1.16 7.87 -39.61 -0.31 -1.47 16 13 C -0.19 -3.79 9.21 -39.38 -0.36 -4.16 16 14 C 0.24 4.90 6.55 -83.78 -0.55 4.35 16 15 N -0.62 -13.28 2.99 -181.00 -0.54 -13.82 16 16 C 0.10 1.75 10.19 59.84 0.61 2.36 16 17 C 0.25 6.26 4.91 -5.19 -0.03 6.24 16 18 C -0.53 -14.48 9.39 -34.44 -0.32 -14.80 16 19 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 20 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 21 N -0.90 -25.70 13.29 55.43 0.74 -24.96 16 22 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 23 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 26 C -0.22 -3.90 9.21 -39.38 -0.36 -4.27 16 27 C -0.05 -0.81 9.69 -39.62 -0.38 -1.20 16 28 C 0.06 0.63 4.74 -3.83 -0.02 0.61 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.88 6.01 -51.93 -0.31 0.56 16 37 H 0.09 1.33 5.77 -51.93 -0.30 1.03 16 38 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.07 0.84 7.93 -51.93 -0.41 0.43 16 40 H 0.03 0.39 8.06 -51.93 -0.42 -0.03 16 41 H 0.11 1.65 7.97 -52.49 -0.42 1.23 16 42 H 0.13 2.91 6.14 -52.48 -0.32 2.59 16 43 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 45 H 0.05 0.87 6.20 -51.93 -0.32 0.55 16 46 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 47 H 0.04 0.93 6.20 -51.93 -0.32 0.61 16 48 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 49 H 0.11 1.79 6.14 -52.49 -0.32 1.47 16 50 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 51 H 0.07 0.67 8.02 -51.93 -0.42 0.26 16 52 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 LS Contribution 396.26 15.07 5.97 5.97 Total: -1.00 -28.25 396.26 -11.50 -39.75 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -9.36 Total: 1.57 kcal Atomic # 6 Polarization: -15.04 SS G_CDS: -2.36 Total: -17.40 kcal Atomic # 7 Polarization: -45.50 SS G_CDS: -0.73 Total: -46.23 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -28.25 -11.50 -39.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158018875.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.998 kcal (2) G-P(sol) polarization free energy of solvation -28.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds