Wall clock time and date at job start Tue Mar 31 2020 11:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.50554 * 2 1 4 4 C 1.53124 * 109.50316 * 239.88664 * 2 1 3 5 5 C 1.53125 * 109.16024 * 182.40294 * 4 2 1 6 6 H 1.08998 * 109.53179 * 177.61336 * 5 4 2 7 7 C 1.52992 * 109.50380 * 297.71206 * 5 4 2 8 8 C 1.53033 * 109.27628 * 57.65529 * 5 4 2 9 9 N 1.46855 * 109.52390 * 300.81659 * 8 5 4 10 10 C 1.46894 * 110.99811 * 185.84297 * 9 8 5 11 11 C 1.50696 * 109.47315 * 65.79410 * 10 9 8 12 12 C 1.38284 * 119.92230 * 269.72148 * 11 10 9 13 13 C 1.38105 * 120.07454 * 179.72711 * 12 11 10 14 14 C 1.38914 * 119.92327 * 0.54454 * 13 12 11 15 15 N 1.39676 * 120.07728 * 179.75012 * 14 13 12 16 16 C 1.46496 * 120.00339 * 179.97438 * 15 14 13 17 17 C 1.46509 * 119.99722 * 359.97438 * 15 14 13 18 18 C 1.50692 * 109.46991 * 89.99979 * 17 15 14 19 19 H 1.08004 * 120.00291 * 359.97438 * 18 17 15 20 20 C 1.37875 * 120.00324 * 179.97438 * 18 17 15 21 21 N 1.31520 * 119.99560 * 0.02562 * 20 18 17 22 22 Si 1.86791 * 120.00584 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47106 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47370 * 119.99948 * 22 20 18 25 25 H 1.48505 * 109.47424 * 239.99982 * 22 20 18 26 26 C 1.38914 * 119.84903 * 359.73294 * 14 13 12 27 27 C 1.38103 * 119.92263 * 359.97438 * 26 14 13 28 28 C 1.46850 * 111.19253 * 61.74635 * 9 8 5 29 29 H 1.09002 * 109.47153 * 299.91697 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.91888 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.91869 * 1 2 3 32 32 H 1.08996 * 109.52192 * 302.30778 * 4 2 1 33 33 H 1.09001 * 109.52366 * 62.50115 * 4 2 1 34 34 H 1.08997 * 109.47188 * 179.80297 * 7 5 4 35 35 H 1.09002 * 109.47455 * 299.80334 * 7 5 4 36 36 H 1.09001 * 109.47577 * 59.80252 * 7 5 4 37 37 H 1.08999 * 109.46211 * 180.80850 * 8 5 4 38 38 H 1.08999 * 109.45907 * 60.83085 * 8 5 4 39 39 H 1.09002 * 109.47040 * 185.79520 * 10 9 8 40 40 H 1.09001 * 109.47649 * 305.78874 * 10 9 8 41 41 H 1.07999 * 119.96610 * 359.97438 * 12 11 10 42 42 H 1.08004 * 120.04155 * 180.27499 * 13 12 11 43 43 H 1.08992 * 109.47197 * 89.99757 * 16 15 14 44 44 H 1.09002 * 109.47225 * 210.00069 * 16 15 14 45 45 H 1.09002 * 109.46775 * 329.99445 * 16 15 14 46 46 H 1.08995 * 109.46654 * 210.00204 * 17 15 14 47 47 H 1.08996 * 109.47075 * 330.00211 * 17 15 14 48 48 H 0.97002 * 119.99719 * 180.02562 * 21 20 18 49 49 H 1.07999 * 120.03250 * 179.97438 * 26 14 13 50 50 H 1.08001 * 119.95788 * 179.97438 * 27 26 14 51 51 H 1.09000 * 109.45313 * 178.24324 * 28 9 8 52 52 H 1.09000 * 109.46325 * 58.27473 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0412 -0.7242 -1.2486 5 6 3.5712 -0.7722 -1.2106 6 1 3.9401 -1.3236 -2.0754 7 6 4.1279 0.6526 -1.2378 8 6 4.0229 -1.4729 0.0727 9 7 3.5093 -0.7417 1.2381 10 6 4.0373 -1.3051 2.4877 11 6 5.5270 -1.0853 2.5479 12 6 6.3862 -2.0381 2.0320 13 6 7.7517 -1.8373 2.0804 14 6 8.2622 -0.6818 2.6583 15 7 9.6429 -0.4779 2.7137 16 6 10.1794 0.7415 3.3230 17 6 10.5545 -1.4835 2.1623 18 6 10.8216 -1.1776 0.7112 19 1 10.3582 -0.3201 0.2459 20 6 11.6574 -1.9923 -0.0227 21 7 12.2212 -3.0368 0.5437 22 14 11.9879 -1.6135 -1.8217 23 1 11.2389 -0.3935 -2.2164 24 1 13.4420 -1.3871 -2.0210 25 1 11.5460 -2.7584 -2.6580 26 6 7.3963 0.2706 3.1808 27 6 6.0317 0.0662 3.1236 28 6 2.0409 -0.7231 1.2482 29 1 -0.3633 0.5125 0.8907 30 1 -0.3633 -1.0277 -0.0015 31 1 -0.3634 0.5151 -0.8893 32 1 1.6452 -1.7395 -1.2685 33 1 1.7157 -0.1876 -2.1398 34 1 5.2169 0.6178 -1.2072 35 1 3.8058 1.1512 -2.1520 36 1 3.7575 1.2040 -0.3735 37 1 5.1121 -1.4961 0.1098 38 1 3.6374 -2.4924 0.0848 39 1 3.5629 -0.8133 3.3370 40 1 3.8260 -2.3738 2.5223 41 1 5.9889 -2.9384 1.5871 42 1 8.4222 -2.5797 1.6733 43 1 10.3453 0.5733 4.3870 44 1 11.1237 1.0016 2.8447 45 1 9.4683 1.5570 3.1906 46 1 11.4931 -1.4655 2.7162 47 1 10.1009 -2.4709 2.2480 48 1 12.8096 -3.6098 0.0275 49 1 7.7900 1.1698 3.6311 50 1 5.3580 0.8061 3.5299 51 1 1.6906 -0.2016 2.1389 52 1 1.6648 -1.7461 1.2548 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000158018875.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:22 Heat of formation + Delta-G solvation = 5.406599 kcal Electronic energy + Delta-G solvation = -27142.190068 eV Core-core repulsion = 23719.056552 eV Total energy + Delta-G solvation = -3423.133516 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.86477 -39.99128 -37.48157 -35.38277 -34.61171 -33.97532 -31.88929 -31.26279 -29.62120 -27.84057 -27.54894 -27.34042 -26.10961 -24.40392 -23.13260 -22.90694 -22.15933 -20.91194 -19.56599 -18.64635 -18.06803 -16.94241 -16.87493 -16.39177 -16.24449 -15.71079 -15.54184 -15.35610 -15.30746 -14.85790 -14.63364 -14.54194 -14.29067 -14.20624 -14.04530 -13.65290 -13.27183 -13.17661 -13.03928 -12.92719 -12.79805 -12.74701 -12.64964 -12.55498 -12.42557 -12.35558 -12.15393 -11.93755 -11.79843 -11.72752 -11.39432 -11.33845 -11.07326 -10.95610 -10.65671 -10.37554 -9.63525 -9.11623 -8.36864 -7.78851 -6.38454 0.71934 0.86321 1.34458 1.36123 1.48561 2.33312 2.64079 2.92371 3.04932 3.37182 3.81771 3.88956 3.98953 4.07433 4.10697 4.24705 4.27481 4.35562 4.41681 4.48225 4.57505 4.64631 4.66564 4.70746 4.72286 4.75821 4.84207 4.85295 4.87394 4.91096 4.92998 4.96050 5.00256 5.02380 5.10532 5.13873 5.19962 5.22632 5.25616 5.33942 5.36512 5.46367 5.48357 5.59689 5.66842 5.69048 5.70445 5.93443 6.06613 6.19766 6.24428 6.34923 6.50425 6.82702 6.94849 7.33540 8.82284 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014290 B = 0.003396 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.921096 B = 8242.751234 C = 9432.653682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.087 4.087 3 H 0.074 0.926 4 C -0.105 4.105 5 C -0.090 4.090 6 H 0.066 0.934 7 C -0.131 4.131 8 C 0.059 3.941 9 N -0.534 5.534 10 C 0.114 3.886 11 C -0.151 4.151 12 C -0.067 4.067 13 C -0.216 4.216 14 C 0.213 3.787 15 N -0.633 5.633 16 C 0.098 3.902 17 C 0.267 3.733 18 C -0.539 4.539 19 H 0.048 0.952 20 C 0.013 3.987 21 N -0.927 5.927 22 Si 0.960 3.040 23 H -0.271 1.271 24 H -0.273 1.273 25 H -0.277 1.277 26 C -0.217 4.217 27 C -0.048 4.048 28 C 0.061 3.939 29 H 0.062 0.938 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.028 0.972 35 H 0.054 0.946 36 H 0.066 0.934 37 H 0.058 0.942 38 H 0.027 0.973 39 H 0.095 0.905 40 H 0.035 0.965 41 H 0.115 0.885 42 H 0.093 0.907 43 H 0.053 0.947 44 H 0.055 0.945 45 H 0.078 0.922 46 H 0.009 0.991 47 H 0.010 0.990 48 H 0.267 0.733 49 H 0.132 0.868 50 H 0.141 0.859 51 H 0.083 0.917 52 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.934 6.698 1.631 23.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.106 4.106 3 H 0.093 0.907 4 C -0.143 4.143 5 C -0.109 4.109 6 H 0.085 0.915 7 C -0.188 4.188 8 C -0.069 4.069 9 N -0.258 5.258 10 C -0.013 4.013 11 C -0.154 4.154 12 C -0.086 4.086 13 C -0.239 4.239 14 C 0.108 3.892 15 N -0.341 5.341 16 C -0.044 4.044 17 C 0.145 3.855 18 C -0.578 4.578 19 H 0.066 0.934 20 C -0.187 4.187 21 N -0.567 5.567 22 Si 0.785 3.215 23 H -0.196 1.196 24 H -0.199 1.199 25 H -0.202 1.202 26 C -0.240 4.240 27 C -0.067 4.067 28 C -0.066 4.066 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.047 0.953 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.045 0.955 39 H 0.113 0.887 40 H 0.053 0.947 41 H 0.133 0.867 42 H 0.111 0.889 43 H 0.071 0.929 44 H 0.074 0.926 45 H 0.096 0.904 46 H 0.027 0.973 47 H 0.028 0.972 48 H 0.076 0.924 49 H 0.150 0.850 50 H 0.159 0.841 51 H 0.102 0.898 52 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -22.424 7.069 1.592 23.566 hybrid contribution 0.947 -1.258 -0.991 1.860 sum -21.478 5.812 0.601 22.258 Atomic orbital electron populations 1.21753 0.93767 1.01975 1.02356 1.21172 0.95822 0.99952 0.93659 0.90735 1.21646 0.93738 1.00518 0.98383 1.21164 0.96483 0.96977 0.96267 0.91533 1.21654 0.99254 0.96171 1.01728 1.22098 0.99698 0.94289 0.90782 1.61894 1.08162 1.54182 1.01587 1.20814 0.90433 0.97510 0.92558 1.19452 0.94992 0.96041 1.04886 1.20760 0.91712 0.98686 0.97468 1.20719 0.96084 0.98940 1.08120 1.18197 0.83857 0.93924 0.93201 1.46959 1.02724 1.21799 1.62616 1.21591 0.99325 0.86568 0.96955 1.18757 0.87500 0.86903 0.92300 1.21797 1.27745 1.11418 0.96855 0.93402 1.25771 0.95336 0.94641 1.02902 1.70046 1.31880 1.16398 1.38342 0.85470 0.78149 0.78249 0.79610 1.19560 1.19850 1.20244 1.20805 0.93575 1.00273 1.09356 1.20845 0.93638 0.96059 0.96115 1.22203 0.86292 0.98944 0.99207 0.91930 0.92706 0.92031 0.92240 0.91132 0.95284 0.92656 0.91508 0.92321 0.95502 0.88704 0.94693 0.86727 0.88916 0.92903 0.92584 0.90397 0.97289 0.97213 0.92389 0.85029 0.84078 0.89834 0.95203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.20 71.98 0.66 -0.99 16 2 C -0.09 -1.37 2.53 -10.74 -0.03 -1.40 16 3 H 0.07 1.30 6.58 -2.38 -0.02 1.29 16 4 C -0.11 -1.80 4.79 30.68 0.15 -1.65 16 5 C -0.09 -1.97 3.21 -10.74 -0.03 -2.01 16 6 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 7 C -0.13 -3.06 8.75 71.98 0.63 -2.43 16 8 C 0.06 1.47 4.60 86.32 0.40 1.87 16 9 N -0.53 -11.91 3.93 -900.94 -3.54 -15.46 16 10 C 0.11 2.59 5.12 85.56 0.44 3.03 16 11 C -0.15 -4.44 4.88 -19.85 -0.10 -4.54 16 12 C -0.07 -2.34 7.87 22.25 0.18 -2.16 16 13 C -0.22 -9.25 9.21 22.40 0.21 -9.04 16 14 C 0.21 8.88 6.55 38.22 0.25 9.13 16 15 N -0.63 -28.34 2.99 -726.57 -2.17 -30.51 16 16 C 0.10 3.50 10.19 127.77 1.30 4.80 16 17 C 0.27 14.31 4.91 85.63 0.42 14.73 16 18 C -0.54 -30.86 9.39 25.60 0.24 -30.62 16 19 H 0.05 2.79 7.81 -2.91 -0.02 2.77 16 20 C 0.01 0.72 5.46 84.65 0.46 1.18 16 21 N -0.93 -55.04 13.29 21.45 0.28 -54.75 16 22 Si 0.96 44.76 29.54 68.60 2.03 46.78 16 23 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 24 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 25 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 26 C -0.22 -7.34 9.21 22.40 0.21 -7.13 16 27 C -0.05 -1.38 9.69 22.25 0.22 -1.17 16 28 C 0.06 1.06 4.74 86.32 0.41 1.47 16 29 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.05 0.62 8.14 -2.39 -0.02 0.61 16 31 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 32 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.07 1.08 8.14 -2.39 -0.02 1.07 16 34 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.07 1.58 6.01 -2.39 -0.01 1.57 16 37 H 0.06 1.80 5.77 -2.39 -0.01 1.78 16 38 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.09 1.79 7.93 -2.39 -0.02 1.77 16 40 H 0.03 0.79 8.06 -2.39 -0.02 0.77 16 41 H 0.11 3.68 7.97 -2.91 -0.02 3.66 16 42 H 0.09 4.59 6.14 -2.91 -0.02 4.57 16 43 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 44 H 0.06 2.07 8.07 -2.39 -0.02 2.05 16 45 H 0.08 2.36 6.20 -2.39 -0.01 2.35 16 46 H 0.01 0.51 8.07 -2.39 -0.02 0.49 16 47 H 0.01 0.57 6.20 -2.39 -0.01 0.56 16 48 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 49 H 0.13 3.87 6.14 -2.91 -0.02 3.85 16 50 H 0.14 3.21 8.06 -2.91 -0.02 3.19 16 51 H 0.08 1.26 8.02 -2.39 -0.02 1.24 16 52 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 Total: -1.00 -63.46 396.26 3.46 -60.00 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: 0.86 Total: 20.87 kcal Atomic # 6 Polarization: -32.93 SS G_CDS: 6.00 Total: -26.93 kcal Atomic # 7 Polarization: -95.29 SS G_CDS: -5.43 Total: -100.72 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Total: -63.46 3.46 -60.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158018875.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.408 kcal (2) G-P(sol) polarization free energy of solvation -63.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds