Wall clock time and date at job start Tue Mar 31 2020 10:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52994 * 109.47461 * 2 1 4 4 C 1.53000 * 109.46961 * 119.99908 * 2 1 3 5 5 C 1.53002 * 109.47289 * 179.97438 * 4 2 1 6 6 C 1.52999 * 109.47092 * 299.99800 * 5 4 2 7 7 C 1.53002 * 109.47092 * 179.97438 * 6 5 4 8 8 N 1.46899 * 109.47132 * 176.85573 * 7 6 5 9 9 C 1.46903 * 110.99926 * 288.02247 * 8 7 6 10 10 C 1.50708 * 109.46705 * 299.64553 * 9 8 7 11 11 H 1.08000 * 119.99809 * 4.67676 * 10 9 8 12 12 C 1.37872 * 120.00005 * 184.67882 * 10 9 8 13 13 N 1.31521 * 120.00114 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00202 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47153 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47199 * 120.00142 * 14 12 10 17 17 H 1.48503 * 109.46835 * 239.99992 * 14 12 10 18 18 C 1.46903 * 111.00346 * 164.06895 * 8 7 6 19 19 C 1.50692 * 109.47084 * 189.99780 * 18 8 7 20 20 C 1.38668 * 120.42154 * 270.24974 * 19 18 8 21 21 C 1.38627 * 118.42382 * 180.24883 * 20 19 18 22 22 C 1.38228 * 119.16083 * 359.74695 * 21 20 19 23 23 N 1.31850 * 120.76242 * 359.97438 * 22 21 20 24 24 C 1.31881 * 121.73039 * 0.02562 * 23 22 21 25 25 C 1.53000 * 109.46890 * 59.99955 * 6 5 4 26 26 C 1.52999 * 109.47182 * 239.99563 * 2 1 3 27 27 H 1.09003 * 109.47479 * 300.00383 * 1 2 3 28 28 H 1.09004 * 109.46979 * 59.99975 * 1 2 3 29 29 H 1.09004 * 109.47811 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47387 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.47448 * 299.99725 * 3 2 1 32 32 H 1.09004 * 109.47385 * 59.99830 * 3 2 1 33 33 H 1.08998 * 109.47320 * 59.99609 * 4 2 1 34 34 H 1.09002 * 109.47474 * 299.99843 * 4 2 1 35 35 H 1.09004 * 109.47307 * 180.02562 * 5 4 2 36 36 H 1.08998 * 109.46946 * 60.00113 * 5 4 2 37 37 H 1.08998 * 109.47480 * 299.99986 * 6 5 4 38 38 H 1.08994 * 109.47152 * 56.84943 * 7 6 5 39 39 H 1.09001 * 109.47087 * 296.85006 * 7 6 5 40 40 H 1.09002 * 109.47444 * 59.64184 * 9 8 7 41 41 H 1.08992 * 109.47474 * 179.64656 * 9 8 7 42 42 H 0.96997 * 120.00300 * 179.97438 * 13 12 10 43 43 H 1.08999 * 109.46708 * 69.99383 * 18 8 7 44 44 H 1.09000 * 109.46560 * 309.99653 * 18 8 7 45 45 H 1.08004 * 120.78920 * 359.96946 * 20 19 18 46 46 H 1.08001 * 120.42056 * 179.72780 * 21 20 19 47 47 H 1.08003 * 119.61539 * 180.02562 * 22 21 20 48 48 H 1.07995 * 119.62308 * 179.97438 * 24 23 22 49 49 H 1.08998 * 109.47320 * 60.00224 * 25 6 5 50 50 H 1.09000 * 109.47253 * 179.97438 * 25 6 5 51 51 H 1.08998 * 109.47480 * 300.00332 * 26 2 1 52 52 H 1.08999 * 109.46797 * 60.00845 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5699 -0.7218 1.2490 6 6 4.0794 -1.4435 -0.0002 7 6 5.6094 -1.4436 -0.0007 8 7 6.0986 -2.2012 -1.1603 9 6 5.8741 -3.6418 -0.9806 10 6 6.6127 -4.1164 0.2443 11 1 7.1286 -3.4057 0.8729 12 6 6.6299 -5.4578 0.5624 13 7 6.0012 -6.3232 -0.2028 14 14 7.5448 -6.0460 2.0811 15 1 8.1636 -4.8835 2.7674 16 1 6.5936 -6.7169 3.0032 17 1 8.6050 -7.0051 1.6797 18 6 7.5174 -1.9173 -1.4143 19 6 7.9189 -2.5108 -2.7399 20 6 8.4032 -3.8082 -2.8105 21 6 8.7653 -4.3109 -4.0506 22 6 8.6276 -3.5096 -5.1685 23 7 8.1580 -2.2819 -5.0646 24 6 7.8037 -1.7710 -3.9015 25 6 3.5694 -0.7223 -1.2494 26 6 2.0399 -0.7213 -1.2492 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3635 -1.0277 0.0005 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6765 -1.7489 1.2493 34 1 1.6766 -0.2074 2.1393 35 1 3.9332 -1.2361 2.1388 36 1 3.9336 0.3057 1.2488 37 1 3.7157 -2.4710 0.0001 38 1 5.9730 -1.9074 0.9161 39 1 5.9727 -0.4175 -0.0577 40 1 4.8076 -3.8309 -0.8578 41 1 6.2397 -4.1785 -1.8560 42 1 6.0135 -7.2670 0.0208 43 1 8.1232 -2.3557 -0.6213 44 1 7.6736 -0.8387 -1.4368 45 1 8.5004 -4.4113 -1.9198 46 1 9.1505 -5.3157 -4.1422 47 1 8.9070 -3.8939 -6.1384 48 1 7.4236 -0.7612 -3.8556 49 1 3.9332 0.3052 -1.2497 50 1 3.9328 -1.2361 -2.1394 51 1 1.6766 -1.7490 -1.2492 52 1 1.6767 -0.2074 -2.1392 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159048220.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:58 Heat of formation + Delta-G solvation = 4.875963 kcal Electronic energy + Delta-G solvation = -27771.450235 eV Core-core repulsion = 24348.293710 eV Total energy + Delta-G solvation = -3423.156526 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.74672 -39.36191 -36.86620 -33.52712 -32.64030 -31.68560 -30.90659 -30.43691 -27.63411 -27.26485 -27.02221 -24.80423 -23.56466 -22.92472 -22.34520 -21.92415 -20.31625 -19.29769 -18.13580 -16.66924 -16.35306 -15.79100 -15.27011 -14.89586 -14.71964 -14.60563 -14.45022 -14.00226 -13.77045 -13.66386 -13.20798 -12.93107 -12.88731 -12.52958 -12.44841 -12.38517 -12.07904 -11.72039 -11.68275 -11.64530 -11.44831 -11.12942 -11.05262 -10.91774 -10.80413 -10.71859 -10.56285 -10.37455 -10.29931 -10.07475 -9.72314 -9.60527 -9.55876 -9.50590 -9.14363 -8.95436 -8.48197 -8.45889 -7.17195 -6.08153 -4.17391 1.62512 1.86161 3.19855 3.29632 3.31602 4.29162 4.34033 4.83542 4.86064 4.89662 4.96146 5.10526 5.21565 5.32396 5.37330 5.50067 5.55584 5.58802 5.61025 5.63865 5.67786 5.71546 5.76507 5.83072 5.88887 5.91393 5.93101 5.94925 6.13135 6.15031 6.16791 6.17843 6.20654 6.28789 6.34030 6.43058 6.48091 6.48313 6.55250 6.59677 6.67395 6.74471 6.85117 6.95735 7.00498 7.05305 7.21335 7.28679 7.51486 7.86621 8.02046 8.22288 8.27717 8.43288 8.93978 9.49012 10.95869 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.009727 B = 0.004753 C = 0.003503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2877.755915 B = 5890.169893 C = 7990.638987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.065 4.065 3 C -0.142 4.142 4 C -0.105 4.105 5 C -0.114 4.114 6 C -0.075 4.075 7 C 0.065 3.935 8 N -0.533 5.533 9 C 0.183 3.817 10 C -0.545 4.545 11 H 0.057 0.943 12 C 0.068 3.932 13 N -0.887 5.887 14 Si 0.881 3.119 15 H -0.274 1.274 16 H -0.284 1.284 17 H -0.284 1.284 18 C 0.100 3.900 19 C -0.107 4.107 20 C -0.048 4.048 21 C -0.178 4.178 22 C 0.081 3.919 23 N -0.497 5.497 24 C 0.103 3.897 25 C -0.103 4.103 26 C -0.108 4.108 27 H 0.049 0.951 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.048 0.952 32 H 0.047 0.953 33 H 0.060 0.940 34 H 0.053 0.947 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.075 0.925 38 H 0.047 0.953 39 H 0.047 0.953 40 H 0.029 0.971 41 H 0.037 0.963 42 H 0.261 0.739 43 H 0.053 0.947 44 H 0.061 0.939 45 H 0.144 0.856 46 H 0.127 0.873 47 H 0.145 0.855 48 H 0.148 0.852 49 H 0.053 0.947 50 H 0.073 0.927 51 H 0.059 0.941 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.325 10.901 -1.673 11.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.065 4.065 3 C -0.199 4.199 4 C -0.142 4.142 5 C -0.152 4.152 6 C -0.094 4.094 7 C -0.063 4.063 8 N -0.256 5.256 9 C 0.057 3.943 10 C -0.585 4.585 11 H 0.075 0.925 12 C -0.135 4.135 13 N -0.525 5.525 14 Si 0.709 3.291 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.210 1.210 18 C -0.028 4.028 19 C -0.109 4.109 20 C -0.075 4.075 21 C -0.198 4.198 22 C -0.076 4.076 23 N -0.206 5.206 24 C -0.054 4.054 25 C -0.140 4.140 26 C -0.146 4.146 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.094 0.906 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.047 0.953 41 H 0.055 0.945 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.080 0.920 45 H 0.161 0.839 46 H 0.145 0.855 47 H 0.163 0.837 48 H 0.165 0.835 49 H 0.071 0.929 50 H 0.092 0.908 51 H 0.077 0.923 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.725 11.379 -2.860 12.310 hybrid contribution 0.936 -1.524 2.436 3.022 sum -2.789 9.855 -0.425 10.251 Atomic orbital electron populations 1.21873 0.95387 1.01484 1.01076 1.20523 0.94474 0.95452 0.96006 1.21949 1.01826 0.95391 1.00744 1.21551 0.96078 1.00189 0.96420 1.21580 0.94865 1.00279 0.98442 1.21043 0.94940 0.99932 0.93505 1.21975 0.94379 0.96157 0.93790 1.62548 1.13988 1.11209 1.37879 1.19834 0.96911 0.81493 0.96055 1.21730 1.33410 0.92594 1.10728 0.92533 1.24915 0.95357 0.96926 0.96316 1.69956 1.42391 1.02401 1.37788 0.86713 0.79820 0.78883 0.83671 1.19883 1.20981 1.21007 1.20804 0.91527 0.97934 0.92576 1.20824 0.98166 0.94960 0.96937 1.21796 0.92572 0.94611 0.98506 1.22095 1.02712 1.01111 0.93882 1.22546 0.96699 0.90112 0.98248 1.67601 1.11376 1.13704 1.27909 1.22510 0.95853 0.99780 0.87223 1.21461 0.93522 0.99865 0.99150 1.21604 0.96956 0.99938 0.96072 0.93157 0.93042 0.92829 0.91731 0.93264 0.93415 0.92100 0.92782 0.92337 0.92356 0.90647 0.93479 0.93442 0.95304 0.94497 0.92896 0.92885 0.92010 0.83862 0.85535 0.83742 0.83505 0.92883 0.90831 0.92263 0.92833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 8.47 37.15 0.31 -1.16 16 2 C -0.06 -0.76 0.77 -154.52 -0.12 -0.87 16 3 C -0.14 -1.53 7.78 37.15 0.29 -1.24 16 4 C -0.10 -1.33 4.73 -26.73 -0.13 -1.45 16 5 C -0.11 -1.59 4.93 -26.73 -0.13 -1.72 16 6 C -0.08 -1.22 2.19 -90.62 -0.20 -1.42 16 7 C 0.07 1.15 4.21 -3.82 -0.02 1.14 16 8 N -0.53 -10.33 4.03 -237.52 -0.96 -11.29 16 9 C 0.18 4.32 4.64 -4.97 -0.02 4.30 16 10 C -0.55 -13.72 7.28 -34.44 -0.25 -13.97 16 11 H 0.06 1.43 5.95 -52.49 -0.31 1.12 16 12 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 13 N -0.89 -24.72 13.29 55.43 0.74 -23.98 16 14 Si 0.88 20.44 29.54 -169.99 -5.02 15.42 16 15 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 18 C 0.10 1.80 4.96 -4.98 -0.02 1.77 16 19 C -0.11 -1.91 4.90 -104.48 -0.51 -2.42 16 20 C -0.05 -0.90 8.07 -39.28 -0.32 -1.22 16 21 C -0.18 -2.91 10.11 -39.44 -0.40 -3.31 16 22 C 0.08 1.27 11.18 -17.55 -0.20 1.08 16 23 N -0.50 -8.57 10.36 -13.25 -0.14 -8.70 16 24 C 0.10 1.75 10.86 -17.55 -0.19 1.56 16 25 C -0.10 -1.51 4.80 -26.76 -0.13 -1.64 16 26 C -0.11 -1.43 4.73 -26.76 -0.13 -1.55 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.73 4.81 -51.93 -0.25 0.48 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.06 0.75 6.43 -51.93 -0.33 0.42 16 37 H 0.08 1.47 6.65 -51.93 -0.35 1.12 16 38 H 0.05 0.94 6.11 -51.93 -0.32 0.62 16 39 H 0.05 0.75 7.81 -51.93 -0.41 0.35 16 40 H 0.03 0.76 6.63 -51.93 -0.34 0.41 16 41 H 0.04 0.96 5.91 -51.93 -0.31 0.65 16 42 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 43 H 0.05 1.04 6.59 -51.93 -0.34 0.70 16 44 H 0.06 0.96 7.81 -51.93 -0.41 0.56 16 45 H 0.14 2.95 7.96 -52.48 -0.42 2.53 16 46 H 0.13 1.79 8.06 -52.49 -0.42 1.37 16 47 H 0.15 1.80 8.06 -52.48 -0.42 1.38 16 48 H 0.15 2.18 8.06 -52.49 -0.42 1.76 16 49 H 0.05 0.73 6.43 -51.93 -0.33 0.40 16 50 H 0.07 1.24 7.69 -51.93 -0.40 0.84 16 51 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 52 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 389.29 15.07 5.87 5.87 Total: -1.00 -27.09 389.29 -10.91 -38.00 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -9.15 Total: 5.15 kcal Atomic # 6 Polarization: -18.21 SS G_CDS: -2.25 Total: -20.46 kcal Atomic # 7 Polarization: -43.62 SS G_CDS: -0.36 Total: -43.97 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -27.09 -10.91 -38.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159048220.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.878 kcal (2) G-P(sol) polarization free energy of solvation -27.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds