Wall clock time and date at job start Tue Mar 31 2020 10:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52994 * 109.47461 * 2 1 4 4 C 1.53000 * 109.46961 * 119.99908 * 2 1 3 5 5 C 1.53002 * 109.47289 * 179.97438 * 4 2 1 6 6 C 1.52999 * 109.47092 * 299.99800 * 5 4 2 7 7 C 1.53002 * 109.47092 * 179.97438 * 6 5 4 8 8 N 1.46899 * 109.47132 * 176.85573 * 7 6 5 9 9 C 1.46903 * 110.99926 * 288.02247 * 8 7 6 10 10 C 1.50708 * 109.46705 * 299.64553 * 9 8 7 11 11 H 1.08000 * 119.99809 * 4.67676 * 10 9 8 12 12 C 1.37872 * 120.00005 * 184.67882 * 10 9 8 13 13 N 1.31521 * 120.00114 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00202 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47153 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47199 * 120.00142 * 14 12 10 17 17 H 1.48503 * 109.46835 * 239.99992 * 14 12 10 18 18 C 1.46903 * 111.00346 * 164.06895 * 8 7 6 19 19 C 1.50692 * 109.47084 * 189.99780 * 18 8 7 20 20 C 1.38668 * 120.42154 * 270.24974 * 19 18 8 21 21 C 1.38627 * 118.42382 * 180.24883 * 20 19 18 22 22 C 1.38228 * 119.16083 * 359.74695 * 21 20 19 23 23 N 1.31850 * 120.76242 * 359.97438 * 22 21 20 24 24 C 1.31881 * 121.73039 * 0.02562 * 23 22 21 25 25 C 1.53000 * 109.46890 * 59.99955 * 6 5 4 26 26 C 1.52999 * 109.47182 * 239.99563 * 2 1 3 27 27 H 1.09003 * 109.47479 * 300.00383 * 1 2 3 28 28 H 1.09004 * 109.46979 * 59.99975 * 1 2 3 29 29 H 1.09004 * 109.47811 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47387 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.47448 * 299.99725 * 3 2 1 32 32 H 1.09004 * 109.47385 * 59.99830 * 3 2 1 33 33 H 1.08998 * 109.47320 * 59.99609 * 4 2 1 34 34 H 1.09002 * 109.47474 * 299.99843 * 4 2 1 35 35 H 1.09004 * 109.47307 * 180.02562 * 5 4 2 36 36 H 1.08998 * 109.46946 * 60.00113 * 5 4 2 37 37 H 1.08998 * 109.47480 * 299.99986 * 6 5 4 38 38 H 1.08994 * 109.47152 * 56.84943 * 7 6 5 39 39 H 1.09001 * 109.47087 * 296.85006 * 7 6 5 40 40 H 1.09002 * 109.47444 * 59.64184 * 9 8 7 41 41 H 1.08992 * 109.47474 * 179.64656 * 9 8 7 42 42 H 0.96997 * 120.00300 * 179.97438 * 13 12 10 43 43 H 1.08999 * 109.46708 * 69.99383 * 18 8 7 44 44 H 1.09000 * 109.46560 * 309.99653 * 18 8 7 45 45 H 1.08004 * 120.78920 * 359.96946 * 20 19 18 46 46 H 1.08001 * 120.42056 * 179.72780 * 21 20 19 47 47 H 1.08003 * 119.61539 * 180.02562 * 22 21 20 48 48 H 1.07995 * 119.62308 * 179.97438 * 24 23 22 49 49 H 1.08998 * 109.47320 * 60.00224 * 25 6 5 50 50 H 1.09000 * 109.47253 * 179.97438 * 25 6 5 51 51 H 1.08998 * 109.47480 * 300.00332 * 26 2 1 52 52 H 1.08999 * 109.46797 * 60.00845 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5699 -0.7218 1.2490 6 6 4.0794 -1.4435 -0.0002 7 6 5.6094 -1.4436 -0.0007 8 7 6.0986 -2.2012 -1.1603 9 6 5.8741 -3.6418 -0.9806 10 6 6.6127 -4.1164 0.2443 11 1 7.1286 -3.4057 0.8729 12 6 6.6299 -5.4578 0.5624 13 7 6.0012 -6.3232 -0.2028 14 14 7.5448 -6.0460 2.0811 15 1 8.1636 -4.8835 2.7674 16 1 6.5936 -6.7169 3.0032 17 1 8.6050 -7.0051 1.6797 18 6 7.5174 -1.9173 -1.4143 19 6 7.9189 -2.5108 -2.7399 20 6 8.4032 -3.8082 -2.8105 21 6 8.7653 -4.3109 -4.0506 22 6 8.6276 -3.5096 -5.1685 23 7 8.1580 -2.2819 -5.0646 24 6 7.8037 -1.7710 -3.9015 25 6 3.5694 -0.7223 -1.2494 26 6 2.0399 -0.7213 -1.2492 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3635 -1.0277 0.0005 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6765 -1.7489 1.2493 34 1 1.6766 -0.2074 2.1393 35 1 3.9332 -1.2361 2.1388 36 1 3.9336 0.3057 1.2488 37 1 3.7157 -2.4710 0.0001 38 1 5.9730 -1.9074 0.9161 39 1 5.9727 -0.4175 -0.0577 40 1 4.8076 -3.8309 -0.8578 41 1 6.2397 -4.1785 -1.8560 42 1 6.0135 -7.2670 0.0208 43 1 8.1232 -2.3557 -0.6213 44 1 7.6736 -0.8387 -1.4368 45 1 8.5004 -4.4113 -1.9198 46 1 9.1505 -5.3157 -4.1422 47 1 8.9070 -3.8939 -6.1384 48 1 7.4236 -0.7612 -3.8556 49 1 3.9332 0.3052 -1.2497 50 1 3.9328 -1.2361 -2.1394 51 1 1.6766 -1.7490 -1.2492 52 1 1.6767 -0.2074 -2.1392 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159048220.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:57 Heat of formation + Delta-G solvation = -7.720553 kcal Electronic energy + Delta-G solvation = -27771.996461 eV Core-core repulsion = 24348.293710 eV Total energy + Delta-G solvation = -3423.702752 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.09759 -40.51387 -38.37808 -34.87139 -34.50786 -33.05603 -32.28960 -31.57494 -29.27128 -28.48679 -28.08819 -26.33669 -25.15841 -24.29140 -23.52637 -23.26812 -21.70756 -20.81022 -19.20986 -18.52442 -17.79893 -17.20832 -16.77722 -16.43638 -16.13803 -15.82644 -15.63181 -15.53153 -15.04646 -14.77687 -14.54477 -14.42560 -14.12093 -14.06414 -13.86950 -13.64808 -13.20485 -13.04915 -13.01273 -12.86351 -12.72091 -12.66514 -12.52707 -12.31268 -12.23632 -12.11725 -11.88916 -11.85360 -11.75526 -11.57267 -11.40611 -10.88776 -10.79444 -10.68230 -10.58932 -10.49259 -10.31516 -9.80968 -8.90016 -8.10905 -6.29085 0.30304 0.46424 1.32146 1.35982 1.44793 2.36458 2.93394 3.13396 3.52961 3.67769 3.81713 3.88528 3.96655 4.01917 4.13510 4.21002 4.24027 4.27675 4.42744 4.45876 4.56866 4.61270 4.63120 4.70687 4.76483 4.80590 4.83894 4.90000 4.93230 4.93884 5.02578 5.05573 5.10672 5.15458 5.18638 5.22471 5.29047 5.31838 5.35054 5.36721 5.38539 5.40917 5.44921 5.58397 5.60399 5.63039 5.75866 5.79132 5.84803 5.90314 6.11341 6.31912 6.61598 6.93052 7.10918 7.41029 8.89927 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.009727 B = 0.004753 C = 0.003503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2877.755915 B = 5890.169893 C = 7990.638987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.062 4.062 3 C -0.139 4.139 4 C -0.103 4.103 5 C -0.108 4.108 6 C -0.070 4.070 7 C 0.067 3.933 8 N -0.528 5.528 9 C 0.205 3.795 10 C -0.540 4.540 11 H 0.055 0.945 12 C 0.019 3.981 13 N -0.923 5.923 14 Si 0.942 3.058 15 H -0.267 1.267 16 H -0.284 1.284 17 H -0.280 1.280 18 C 0.103 3.897 19 C -0.120 4.120 20 C -0.070 4.070 21 C -0.180 4.180 22 C 0.086 3.914 23 N -0.508 5.508 24 C 0.105 3.895 25 C -0.093 4.093 26 C -0.106 4.106 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.044 0.956 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.041 0.959 34 H 0.072 0.928 35 H 0.045 0.955 36 H 0.079 0.921 37 H 0.031 0.969 38 H 0.021 0.979 39 H 0.077 0.923 40 H -0.006 1.006 41 H 0.012 0.988 42 H 0.261 0.739 43 H 0.032 0.968 44 H 0.094 0.906 45 H 0.113 0.887 46 H 0.146 0.854 47 H 0.182 0.818 48 H 0.170 0.830 49 H 0.072 0.928 50 H 0.048 0.952 51 H 0.037 0.963 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.204 13.389 -1.894 13.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.062 4.062 3 C -0.196 4.196 4 C -0.141 4.141 5 C -0.146 4.146 6 C -0.089 4.089 7 C -0.061 4.061 8 N -0.250 5.250 9 C 0.078 3.922 10 C -0.579 4.579 11 H 0.073 0.927 12 C -0.180 4.180 13 N -0.563 5.563 14 Si 0.768 3.232 15 H -0.192 1.192 16 H -0.210 1.210 17 H -0.206 1.206 18 C -0.025 4.025 19 C -0.122 4.122 20 C -0.097 4.097 21 C -0.200 4.200 22 C -0.071 4.071 23 N -0.217 5.217 24 C -0.052 4.052 25 C -0.130 4.130 26 C -0.144 4.144 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.063 0.937 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.060 0.940 34 H 0.091 0.909 35 H 0.064 0.936 36 H 0.097 0.903 37 H 0.049 0.951 38 H 0.039 0.961 39 H 0.095 0.905 40 H 0.013 0.987 41 H 0.030 0.970 42 H 0.070 0.930 43 H 0.050 0.950 44 H 0.112 0.888 45 H 0.131 0.869 46 H 0.164 0.836 47 H 0.199 0.801 48 H 0.187 0.813 49 H 0.090 0.910 50 H 0.067 0.933 51 H 0.056 0.944 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.597 13.885 -3.075 14.669 hybrid contribution 0.914 -2.302 2.447 3.482 sum -2.683 11.582 -0.629 11.906 Atomic orbital electron populations 1.21847 0.94195 1.01350 1.02207 1.20502 0.95444 0.95967 0.94251 1.21918 1.01496 0.94284 1.01905 1.21547 0.94976 0.99611 0.97969 1.21532 0.95905 1.00748 0.96405 1.20952 0.93976 0.98100 0.95862 1.22045 0.95333 0.96955 0.91766 1.62484 1.15348 1.08638 1.38572 1.19361 0.94258 0.84078 0.94455 1.21911 1.32577 0.92575 1.10812 0.92677 1.25626 0.96237 0.97243 0.98930 1.70076 1.44070 1.02609 1.39564 0.85754 0.78618 0.78448 0.80383 1.19169 1.21015 1.20585 1.20842 0.89822 0.99680 0.92139 1.20842 0.98967 0.94983 0.97401 1.21705 0.94319 0.95078 0.98564 1.22330 1.02275 1.02183 0.93209 1.23111 0.95167 0.89409 0.99412 1.67693 1.11720 1.14418 1.27832 1.22796 0.95241 1.00532 0.86630 1.21345 0.94669 1.00093 0.96938 1.21580 0.95746 0.99262 0.97785 0.91872 0.92057 0.93672 0.92160 0.92317 0.92128 0.94012 0.90934 0.93573 0.90258 0.95074 0.96085 0.90464 0.98748 0.96956 0.92952 0.95024 0.88781 0.86878 0.83612 0.80117 0.81315 0.90959 0.93341 0.94375 0.91496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 8.47 71.98 0.61 -2.01 16 2 C -0.06 -1.33 0.77 -52.19 -0.04 -1.37 16 3 C -0.14 -2.53 7.78 71.98 0.56 -1.97 16 4 C -0.10 -2.53 4.73 30.59 0.14 -2.38 16 5 C -0.11 -2.95 4.93 30.59 0.15 -2.80 16 6 C -0.07 -2.32 2.19 -10.79 -0.02 -2.35 16 7 C 0.07 2.38 4.21 86.30 0.36 2.75 16 8 N -0.53 -21.01 4.03 -905.37 -3.65 -24.66 16 9 C 0.21 10.28 4.64 85.56 0.40 10.68 16 10 C -0.54 -28.35 7.28 25.60 0.19 -28.17 16 11 H 0.06 2.87 5.95 -2.91 -0.02 2.86 16 12 C 0.02 1.04 5.46 84.65 0.46 1.50 16 13 N -0.92 -53.66 13.29 21.45 0.28 -53.38 16 14 Si 0.94 43.04 29.54 68.60 2.03 45.06 16 15 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 16 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 17 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 18 C 0.10 3.73 4.96 85.55 0.42 4.15 16 19 C -0.12 -4.31 4.90 -19.77 -0.10 -4.41 16 20 C -0.07 -2.68 8.07 22.47 0.18 -2.50 16 21 C -0.18 -5.83 10.11 22.36 0.23 -5.60 16 22 C 0.09 2.54 11.18 84.69 0.95 3.49 16 23 N -0.51 -16.58 10.36 -195.84 -2.03 -18.61 16 24 C 0.10 3.40 10.86 84.68 0.92 4.32 16 25 C -0.09 -2.70 4.80 30.58 0.15 -2.56 16 26 C -0.11 -2.74 4.73 30.58 0.14 -2.60 16 27 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.06 1.15 4.81 -2.38 -0.01 1.14 16 31 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 33 H 0.04 1.16 8.14 -2.39 -0.02 1.15 16 34 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.08 1.85 6.43 -2.39 -0.02 1.84 16 37 H 0.03 1.30 6.65 -2.39 -0.02 1.29 16 38 H 0.02 0.86 6.11 -2.39 -0.01 0.84 16 39 H 0.08 2.30 7.81 -2.39 -0.02 2.28 16 40 H -0.01 -0.31 6.63 -2.39 -0.02 -0.33 16 41 H 0.01 0.68 5.91 -2.39 -0.01 0.67 16 42 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 43 H 0.03 1.27 6.59 -2.39 -0.02 1.26 16 44 H 0.09 2.76 7.81 -2.39 -0.02 2.74 16 45 H 0.11 4.98 7.96 -2.91 -0.02 4.95 16 46 H 0.15 4.02 8.06 -2.91 -0.02 4.00 16 47 H 0.18 3.94 8.06 -2.91 -0.02 3.91 16 48 H 0.17 4.62 8.06 -2.91 -0.02 4.60 16 49 H 0.07 1.83 6.43 -2.39 -0.02 1.82 16 50 H 0.05 1.65 7.69 -2.39 -0.02 1.63 16 51 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 52 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -61.17 389.29 3.21 -57.96 By element: Atomic # 1 Polarization: 24.58 SS G_CDS: 0.87 Total: 25.45 kcal Atomic # 6 Polarization: -37.53 SS G_CDS: 5.70 Total: -31.83 kcal Atomic # 7 Polarization: -91.25 SS G_CDS: -5.39 Total: -96.65 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.06 kcal Total: -61.17 3.21 -57.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159048220.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.242 kcal (2) G-P(sol) polarization free energy of solvation -61.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds