Wall clock time and date at job start Tue Mar 31 2020 10:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38125 * 120.03417 * 2 1 4 4 C 1.38264 * 120.07206 * 180.02562 * 3 2 1 5 5 C 1.38309 * 120.15222 * 359.97438 * 4 3 2 6 6 C 1.38091 * 120.06902 * 359.73991 * 5 4 3 7 7 C 1.38886 * 120.03810 * 179.97438 * 2 1 3 8 8 N 1.39676 * 120.07395 * 359.97438 * 7 2 1 9 9 C 1.46952 * 110.99910 * 134.77819 * 8 7 2 10 10 C 1.53054 * 109.36946 * 183.18877 * 9 8 7 11 11 N 1.46956 * 109.35805 * 301.60103 * 10 9 8 12 12 C 1.46906 * 110.99617 * 183.18608 * 11 10 9 13 13 C 1.53002 * 109.47321 * 147.78921 * 12 11 10 14 14 C 1.53003 * 109.47311 * 67.47904 * 13 12 11 15 15 C 1.53003 * 109.46810 * 307.48149 * 13 12 11 16 16 C 1.52998 * 109.47123 * 187.48228 * 13 12 11 17 17 C 1.50704 * 109.47066 * 179.97438 * 16 13 12 18 18 H 1.07999 * 119.99737 * 359.97438 * 17 16 13 19 19 C 1.37870 * 119.99906 * 180.02562 * 17 16 13 20 20 N 1.31513 * 120.00222 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99919 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47074 * 89.99728 * 21 19 17 23 23 H 1.48494 * 109.47120 * 209.99891 * 21 19 17 24 24 H 1.48499 * 109.47220 * 330.00032 * 21 19 17 25 25 C 1.46959 * 110.88554 * 59.31807 * 11 10 9 26 26 C 1.46960 * 111.00156 * 258.57541 * 8 7 2 27 27 H 1.09000 * 109.46911 * 274.73708 * 1 2 3 28 28 H 1.09000 * 109.47311 * 34.73871 * 1 2 3 29 29 H 1.09005 * 109.47339 * 154.74193 * 1 2 3 30 30 H 1.08002 * 119.96705 * 359.97438 * 3 2 1 31 31 H 1.08001 * 119.92373 * 179.97438 * 4 3 2 32 32 H 1.07993 * 119.96606 * 180.02562 * 5 4 3 33 33 H 1.08003 * 120.03200 * 180.27465 * 6 5 4 34 34 H 1.08998 * 109.49146 * 63.21974 * 9 8 7 35 35 H 1.09004 * 109.50608 * 303.16695 * 9 8 7 36 36 H 1.08995 * 109.49454 * 181.63074 * 10 9 8 37 37 H 1.09005 * 109.48594 * 61.55778 * 10 9 8 38 38 H 1.09001 * 109.47339 * 27.78544 * 12 11 10 39 39 H 1.09004 * 109.46620 * 267.78546 * 12 11 10 40 40 H 1.09000 * 109.47141 * 151.88189 * 14 13 12 41 41 H 1.08999 * 109.47354 * 271.88655 * 14 13 12 42 42 H 1.09004 * 109.46688 * 31.88326 * 14 13 12 43 43 H 1.08996 * 109.47345 * 299.99992 * 15 13 12 44 44 H 1.09001 * 109.47149 * 59.99808 * 15 13 12 45 45 H 1.08999 * 109.47210 * 179.97438 * 15 13 12 46 46 H 1.08999 * 109.47123 * 299.99518 * 16 13 12 47 47 H 1.08996 * 109.47081 * 59.99978 * 16 13 12 48 48 H 0.96998 * 120.00131 * 180.02562 * 20 19 17 49 49 H 1.09003 * 109.48414 * 60.64276 * 25 11 10 50 50 H 1.08994 * 109.48895 * 180.70766 * 25 11 10 51 51 H 1.08996 * 109.48913 * 296.78134 * 26 8 7 52 52 H 1.08997 * 109.48669 * 56.82135 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1958 0.0000 4 6 3.5810 1.1967 -0.0005 5 6 4.2765 0.0012 -0.0005 6 6 3.5915 -1.1978 0.0054 7 6 2.2022 -1.2023 0.0005 8 7 1.5062 -2.4133 0.0016 9 6 2.0813 -3.3521 -0.9718 10 6 1.2444 -4.6333 -0.9969 11 7 1.2181 -5.2243 0.3483 12 6 0.4861 -6.4981 0.3494 13 6 1.0953 -7.4356 1.3939 14 6 0.8324 -6.8785 2.7944 15 6 2.6040 -7.5443 1.1633 16 6 0.4590 -8.8213 1.2683 17 6 1.0596 -9.7448 2.2967 18 1 1.8194 -9.3800 2.9719 19 6 0.6397 -11.0557 2.3748 20 7 -0.2845 -11.5004 1.5515 21 14 1.3836 -12.2004 3.6499 22 1 0.5875 -12.1311 4.9016 23 1 1.3722 -13.5922 3.1324 24 1 2.7824 -11.7877 3.9295 25 6 0.6430 -4.2856 1.3219 26 6 1.4799 -3.0045 1.3468 27 1 -0.3633 0.0849 1.0242 28 1 -0.3634 0.8445 -0.5856 29 1 -0.3634 -0.9294 -0.4385 30 1 1.6584 2.1311 -0.0004 31 1 4.1191 2.1331 -0.0010 32 1 5.3564 0.0054 -0.0005 33 1 4.1352 -2.1310 0.0099 34 1 3.1050 -3.5920 -0.6847 35 1 2.0786 -2.8966 -1.9621 36 1 1.6858 -5.3424 -1.6971 37 1 0.2274 -4.3973 -1.3103 38 1 0.5557 -6.9580 -0.6363 39 1 -0.5608 -6.3152 0.5920 40 1 0.7920 -7.6995 3.5103 41 1 1.6353 -6.1950 3.0703 42 1 -0.1177 -6.3442 2.8004 43 1 2.7914 -7.9411 0.1656 44 1 3.0573 -6.5571 1.2527 45 1 3.0381 -8.2118 1.9076 46 1 -0.6157 -8.7438 1.4327 47 1 0.6464 -9.2181 0.2706 48 1 -0.5801 -12.4226 1.6067 49 1 -0.3808 -4.0457 1.0346 50 1 0.6460 -4.7413 2.3120 51 1 2.4968 -3.2404 1.6603 52 1 1.0389 -2.2952 2.0471 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162449373.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:47 Heat of formation + Delta-G solvation = 29.771103 kcal Electronic energy + Delta-G solvation = -27253.875029 eV Core-core repulsion = 23831.798037 eV Total energy + Delta-G solvation = -3422.076992 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.50405 -38.72870 -36.77078 -34.37994 -32.88866 -32.18965 -30.98917 -30.06512 -27.64005 -26.89697 -26.51191 -26.16569 -24.32684 -23.51168 -22.62496 -21.96927 -21.11233 -19.60028 -17.90406 -17.28098 -16.18900 -15.93299 -15.72313 -15.19310 -14.92602 -14.86363 -14.63570 -14.38806 -14.07578 -13.68597 -13.40591 -13.20873 -13.15244 -12.73697 -12.64334 -12.41475 -12.25909 -12.14953 -12.00929 -11.67373 -11.49933 -11.40896 -11.25711 -11.18855 -10.92571 -10.74781 -10.69674 -10.56879 -10.33414 -10.26006 -9.94524 -9.59972 -9.08990 -8.95670 -8.89114 -8.81169 -8.38935 -8.29631 -7.93404 -5.94442 -3.94120 1.11074 1.18278 3.34323 3.41029 3.44064 3.50662 3.68616 4.14894 4.50986 4.68089 4.71272 4.84272 4.86936 5.08627 5.12112 5.20209 5.26558 5.33195 5.37264 5.41353 5.46707 5.53581 5.57045 5.62870 5.69770 5.72461 5.76895 5.81966 5.91678 6.00275 6.08364 6.09940 6.10407 6.23913 6.29382 6.30769 6.35480 6.40825 6.57355 6.66056 6.74375 6.80957 6.82944 6.90717 7.21495 7.26702 7.30411 7.34119 7.41056 7.52516 7.74139 7.89619 8.06162 8.51141 9.11413 9.68352 11.17196 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.030759 B = 0.002516 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.076934 B =11126.192844 C =11341.341207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.068 4.068 3 C -0.117 4.117 4 C -0.126 4.126 5 C -0.117 4.117 6 C -0.147 4.147 7 C 0.094 3.906 8 N -0.501 5.501 9 C 0.061 3.939 10 C 0.057 3.943 11 N -0.531 5.531 12 C 0.066 3.934 13 C -0.051 4.051 14 C -0.133 4.133 15 C -0.112 4.112 16 C 0.033 3.967 17 C -0.505 4.505 18 H 0.059 0.941 19 C 0.054 3.946 20 N -0.898 5.898 21 Si 0.887 3.113 22 H -0.282 1.282 23 H -0.288 1.288 24 H -0.274 1.274 25 C 0.047 3.953 26 C 0.067 3.933 27 H 0.065 0.935 28 H 0.058 0.942 29 H 0.080 0.920 30 H 0.122 0.878 31 H 0.119 0.881 32 H 0.119 0.881 33 H 0.122 0.878 34 H 0.048 0.952 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.037 0.963 38 H 0.063 0.937 39 H 0.035 0.965 40 H 0.069 0.931 41 H 0.038 0.962 42 H 0.034 0.966 43 H 0.035 0.965 44 H 0.043 0.957 45 H 0.051 0.949 46 H 0.012 0.988 47 H 0.013 0.987 48 H 0.258 0.742 49 H 0.037 0.963 50 H 0.097 0.903 51 H 0.046 0.954 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.658 24.908 -4.330 25.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.069 4.069 3 C -0.136 4.136 4 C -0.144 4.144 5 C -0.135 4.135 6 C -0.167 4.167 7 C -0.001 4.001 8 N -0.222 5.222 9 C -0.066 4.066 10 C -0.072 4.072 11 N -0.255 5.255 12 C -0.061 4.061 13 C -0.052 4.052 14 C -0.190 4.190 15 C -0.169 4.169 16 C -0.005 4.005 17 C -0.543 4.543 18 H 0.077 0.923 19 C -0.146 4.146 20 N -0.538 5.538 21 Si 0.715 3.285 22 H -0.208 1.208 23 H -0.214 1.214 24 H -0.199 1.199 25 C -0.081 4.081 26 C -0.059 4.059 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.099 0.901 30 H 0.140 0.860 31 H 0.137 0.863 32 H 0.137 0.863 33 H 0.140 0.860 34 H 0.066 0.934 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.056 0.944 38 H 0.082 0.918 39 H 0.053 0.947 40 H 0.088 0.912 41 H 0.057 0.943 42 H 0.053 0.947 43 H 0.054 0.946 44 H 0.062 0.938 45 H 0.070 0.930 46 H 0.030 0.970 47 H 0.032 0.968 48 H 0.068 0.932 49 H 0.055 0.945 50 H 0.115 0.885 51 H 0.064 0.936 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.534 24.706 -4.375 25.497 hybrid contribution 0.386 -0.743 0.567 1.012 sum 4.920 23.963 -3.808 24.757 Atomic orbital electron populations 1.20678 0.90716 1.03204 1.01909 1.19812 0.96487 0.91424 0.99140 1.20981 0.94189 0.97312 1.01114 1.21114 0.94309 0.97936 1.01013 1.21003 0.99718 0.92301 1.00519 1.21687 0.94684 0.98655 1.01680 1.18702 0.90243 0.90866 1.00246 1.59724 1.52390 1.02409 1.07652 1.22245 0.97150 0.91873 0.95306 1.22180 0.98694 0.94640 0.91645 1.62177 1.54336 1.03889 1.05124 1.22366 0.94723 0.88569 1.00405 1.20561 0.95972 0.95890 0.92730 1.21992 0.98412 1.00251 0.98308 1.21577 0.95380 0.99592 1.00347 1.19150 0.95410 0.88908 0.96995 1.21228 1.21369 0.94816 1.16901 0.92280 1.25015 0.95304 0.98324 0.95990 1.69965 1.30198 1.16030 1.37578 0.86675 0.79648 0.80321 0.81844 1.20835 1.21410 1.19934 1.22495 0.95696 0.91397 0.98505 1.22217 0.99992 0.95427 0.88306 0.91669 0.92279 0.90062 0.86023 0.86264 0.86294 0.86032 0.93417 0.90620 0.90212 0.94441 0.91814 0.94709 0.91197 0.94337 0.94703 0.94609 0.93771 0.92962 0.96967 0.96828 0.93199 0.94527 0.88541 0.93562 0.90652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 9.82 36.01 0.35 -0.61 16 2 C -0.07 -0.69 5.90 -104.42 -0.62 -1.30 16 3 C -0.12 -1.04 9.71 -39.61 -0.38 -1.43 16 4 C -0.13 -1.07 10.04 -39.55 -0.40 -1.47 16 5 C -0.12 -1.07 10.04 -39.61 -0.40 -1.47 16 6 C -0.15 -1.54 9.01 -39.38 -0.35 -1.90 16 7 C 0.09 1.04 4.73 -83.79 -0.40 0.64 16 8 N -0.50 -5.75 3.56 -170.96 -0.61 -6.35 16 9 C 0.06 0.70 5.10 -3.77 -0.02 0.68 16 10 C 0.06 0.72 5.48 -3.77 -0.02 0.70 16 11 N -0.53 -7.68 3.46 -234.46 -0.81 -8.49 16 12 C 0.07 1.14 4.20 -3.82 -0.02 1.12 16 13 C -0.05 -1.01 0.61 -154.51 -0.09 -1.10 16 14 C -0.13 -2.47 7.19 37.16 0.27 -2.20 16 15 C -0.11 -2.16 7.82 37.16 0.29 -1.87 16 16 C 0.03 0.82 4.03 -27.88 -0.11 0.71 16 17 C -0.50 -13.76 7.25 -34.44 -0.25 -14.01 16 18 H 0.06 1.58 6.00 -52.49 -0.32 1.26 16 19 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 20 N -0.90 -26.84 13.29 55.43 0.74 -26.10 16 21 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 25 C 0.05 0.63 5.14 -3.77 -0.02 0.61 16 26 C 0.07 0.79 5.49 -3.77 -0.02 0.77 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.44 8.12 -51.93 -0.42 0.02 16 29 H 0.08 0.83 7.31 -51.93 -0.38 0.45 16 30 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 31 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 32 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 33 H 0.12 1.26 6.68 -52.48 -0.35 0.91 16 34 H 0.05 0.57 6.66 -51.93 -0.35 0.22 16 35 H 0.08 0.81 8.13 -51.93 -0.42 0.39 16 36 H 0.08 0.99 7.98 -51.93 -0.41 0.58 16 37 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.06 1.11 7.64 -51.93 -0.40 0.71 16 39 H 0.03 0.61 7.59 -51.93 -0.39 0.21 16 40 H 0.07 1.47 6.27 -51.93 -0.33 1.14 16 41 H 0.04 0.65 7.12 -51.93 -0.37 0.28 16 42 H 0.03 0.60 6.68 -51.93 -0.35 0.25 16 43 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.04 0.78 7.39 -51.93 -0.38 0.40 16 45 H 0.05 1.09 6.62 -51.93 -0.34 0.75 16 46 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 47 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 49 H 0.04 0.50 8.12 -51.93 -0.42 0.08 16 50 H 0.10 1.34 4.49 -51.93 -0.23 1.11 16 51 H 0.05 0.59 8.07 -51.93 -0.42 0.17 16 52 H 0.08 0.84 8.13 -51.93 -0.42 0.42 16 LS Contribution 390.38 15.07 5.88 5.88 Total: -1.00 -29.17 390.38 -11.33 -40.50 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -9.22 Total: -1.33 kcal Atomic # 6 Polarization: -18.41 SS G_CDS: -2.28 Total: -20.70 kcal Atomic # 7 Polarization: -40.26 SS G_CDS: -0.68 Total: -40.95 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -29.17 -11.33 -40.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162449373.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.272 kcal (2) G-P(sol) polarization free energy of solvation -29.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds