Wall clock time and date at job start Tue Mar 31 2020 10:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38125 * 120.03417 * 2 1 4 4 C 1.38264 * 120.07206 * 180.02562 * 3 2 1 5 5 C 1.38309 * 120.15222 * 359.97438 * 4 3 2 6 6 C 1.38091 * 120.06902 * 359.73991 * 5 4 3 7 7 C 1.38886 * 120.03810 * 179.97438 * 2 1 3 8 8 N 1.39676 * 120.07395 * 359.97438 * 7 2 1 9 9 C 1.46952 * 110.99910 * 134.77819 * 8 7 2 10 10 C 1.53054 * 109.36946 * 183.18877 * 9 8 7 11 11 N 1.46956 * 109.35805 * 301.60103 * 10 9 8 12 12 C 1.46906 * 110.99617 * 183.18608 * 11 10 9 13 13 C 1.53002 * 109.47321 * 147.78921 * 12 11 10 14 14 C 1.53003 * 109.47311 * 67.47904 * 13 12 11 15 15 C 1.53003 * 109.46810 * 307.48149 * 13 12 11 16 16 C 1.52998 * 109.47123 * 187.48228 * 13 12 11 17 17 C 1.50704 * 109.47066 * 179.97438 * 16 13 12 18 18 H 1.07999 * 119.99737 * 359.97438 * 17 16 13 19 19 C 1.37870 * 119.99906 * 180.02562 * 17 16 13 20 20 N 1.31513 * 120.00222 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99919 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47074 * 89.99728 * 21 19 17 23 23 H 1.48494 * 109.47120 * 209.99891 * 21 19 17 24 24 H 1.48499 * 109.47220 * 330.00032 * 21 19 17 25 25 C 1.46959 * 110.88554 * 59.31807 * 11 10 9 26 26 C 1.46960 * 111.00156 * 258.57541 * 8 7 2 27 27 H 1.09000 * 109.46911 * 274.73708 * 1 2 3 28 28 H 1.09000 * 109.47311 * 34.73871 * 1 2 3 29 29 H 1.09005 * 109.47339 * 154.74193 * 1 2 3 30 30 H 1.08002 * 119.96705 * 359.97438 * 3 2 1 31 31 H 1.08001 * 119.92373 * 179.97438 * 4 3 2 32 32 H 1.07993 * 119.96606 * 180.02562 * 5 4 3 33 33 H 1.08003 * 120.03200 * 180.27465 * 6 5 4 34 34 H 1.08998 * 109.49146 * 63.21974 * 9 8 7 35 35 H 1.09004 * 109.50608 * 303.16695 * 9 8 7 36 36 H 1.08995 * 109.49454 * 181.63074 * 10 9 8 37 37 H 1.09005 * 109.48594 * 61.55778 * 10 9 8 38 38 H 1.09001 * 109.47339 * 27.78544 * 12 11 10 39 39 H 1.09004 * 109.46620 * 267.78546 * 12 11 10 40 40 H 1.09000 * 109.47141 * 151.88189 * 14 13 12 41 41 H 1.08999 * 109.47354 * 271.88655 * 14 13 12 42 42 H 1.09004 * 109.46688 * 31.88326 * 14 13 12 43 43 H 1.08996 * 109.47345 * 299.99992 * 15 13 12 44 44 H 1.09001 * 109.47149 * 59.99808 * 15 13 12 45 45 H 1.08999 * 109.47210 * 179.97438 * 15 13 12 46 46 H 1.08999 * 109.47123 * 299.99518 * 16 13 12 47 47 H 1.08996 * 109.47081 * 59.99978 * 16 13 12 48 48 H 0.96998 * 120.00131 * 180.02562 * 20 19 17 49 49 H 1.09003 * 109.48414 * 60.64276 * 25 11 10 50 50 H 1.08994 * 109.48895 * 180.70766 * 25 11 10 51 51 H 1.08996 * 109.48913 * 296.78134 * 26 8 7 52 52 H 1.08997 * 109.48669 * 56.82135 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1958 0.0000 4 6 3.5810 1.1967 -0.0005 5 6 4.2765 0.0012 -0.0005 6 6 3.5915 -1.1978 0.0054 7 6 2.2022 -1.2023 0.0005 8 7 1.5062 -2.4133 0.0016 9 6 2.0813 -3.3521 -0.9718 10 6 1.2444 -4.6333 -0.9969 11 7 1.2181 -5.2243 0.3483 12 6 0.4861 -6.4981 0.3494 13 6 1.0953 -7.4356 1.3939 14 6 0.8324 -6.8785 2.7944 15 6 2.6040 -7.5443 1.1633 16 6 0.4590 -8.8213 1.2683 17 6 1.0596 -9.7448 2.2967 18 1 1.8194 -9.3800 2.9719 19 6 0.6397 -11.0557 2.3748 20 7 -0.2845 -11.5004 1.5515 21 14 1.3836 -12.2004 3.6499 22 1 0.5875 -12.1311 4.9016 23 1 1.3722 -13.5922 3.1324 24 1 2.7824 -11.7877 3.9295 25 6 0.6430 -4.2856 1.3219 26 6 1.4799 -3.0045 1.3468 27 1 -0.3633 0.0849 1.0242 28 1 -0.3634 0.8445 -0.5856 29 1 -0.3634 -0.9294 -0.4385 30 1 1.6584 2.1311 -0.0004 31 1 4.1191 2.1331 -0.0010 32 1 5.3564 0.0054 -0.0005 33 1 4.1352 -2.1310 0.0099 34 1 3.1050 -3.5920 -0.6847 35 1 2.0786 -2.8966 -1.9621 36 1 1.6858 -5.3424 -1.6971 37 1 0.2274 -4.3973 -1.3103 38 1 0.5557 -6.9580 -0.6363 39 1 -0.5608 -6.3152 0.5920 40 1 0.7920 -7.6995 3.5103 41 1 1.6353 -6.1950 3.0703 42 1 -0.1177 -6.3442 2.8004 43 1 2.7914 -7.9411 0.1656 44 1 3.0573 -6.5571 1.2527 45 1 3.0381 -8.2118 1.9076 46 1 -0.6157 -8.7438 1.4327 47 1 0.6464 -9.2181 0.2706 48 1 -0.5801 -12.4226 1.6067 49 1 -0.3808 -4.0457 1.0346 50 1 0.6460 -4.7413 2.3120 51 1 2.4968 -3.2404 1.6603 52 1 1.0389 -2.2952 2.0471 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162449373.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:47 Heat of formation + Delta-G solvation = 15.976882 kcal Electronic energy + Delta-G solvation = -27254.473191 eV Core-core repulsion = 23831.798037 eV Total energy + Delta-G solvation = -3422.675154 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.36559 -39.83241 -38.04745 -35.69251 -34.20191 -33.55899 -32.00076 -30.97608 -29.06788 -28.43185 -27.88539 -27.25425 -25.75884 -24.53460 -24.15327 -22.99045 -21.83766 -20.59143 -19.53355 -18.29650 -18.12888 -16.84377 -16.51488 -16.49394 -16.22564 -15.92254 -15.83221 -15.75656 -15.01003 -14.78006 -14.61840 -14.35314 -14.21938 -14.09225 -13.92847 -13.88758 -13.57950 -13.08728 -13.05889 -12.84532 -12.77474 -12.62938 -12.48507 -12.38883 -12.27749 -12.19929 -12.10233 -12.02232 -11.94325 -11.70841 -11.57361 -11.29431 -10.86660 -10.65344 -10.48611 -9.84306 -9.60036 -9.23609 -9.12172 -8.12621 -6.18976 0.39343 0.48366 1.41266 1.41686 1.52371 2.44384 2.76019 2.86072 2.97937 3.21137 3.86215 3.99505 4.02888 4.04293 4.16999 4.20517 4.24304 4.32483 4.37830 4.42172 4.47019 4.48324 4.53622 4.63090 4.75351 4.77638 4.81563 4.85107 4.87940 4.91452 4.92578 4.96900 4.99541 5.06212 5.07732 5.13998 5.24017 5.26280 5.42501 5.52257 5.54422 5.57606 5.61971 5.66020 5.68123 5.69993 5.86806 5.91099 5.95305 5.98924 6.13454 6.24386 6.39352 6.48806 6.95948 7.47785 8.99610 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.030759 B = 0.002516 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.076934 B =11126.192844 C =11341.341207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.080 4.080 3 C -0.120 4.120 4 C -0.125 4.125 5 C -0.123 4.123 6 C -0.159 4.159 7 C 0.074 3.926 8 N -0.501 5.501 9 C 0.069 3.931 10 C 0.059 3.941 11 N -0.532 5.532 12 C 0.078 3.922 13 C -0.047 4.047 14 C -0.123 4.123 15 C -0.100 4.100 16 C 0.040 3.960 17 C -0.510 4.510 18 H 0.065 0.935 19 C -0.005 4.005 20 N -0.938 5.938 21 Si 0.955 3.045 22 H -0.275 1.275 23 H -0.287 1.287 24 H -0.264 1.264 25 C 0.050 3.950 26 C 0.075 3.925 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.143 0.857 31 H 0.144 0.856 32 H 0.136 0.864 33 H 0.117 0.883 34 H 0.044 0.956 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.035 0.965 38 H 0.056 0.944 39 H 0.030 0.970 40 H 0.043 0.957 41 H 0.059 0.941 42 H 0.046 0.954 43 H 0.027 0.973 44 H 0.065 0.935 45 H 0.034 0.966 46 H -0.016 1.016 47 H -0.016 1.016 48 H 0.259 0.741 49 H 0.034 0.966 50 H 0.092 0.908 51 H 0.039 0.961 52 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.917 27.313 -3.711 28.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.081 4.081 3 C -0.139 4.139 4 C -0.143 4.143 5 C -0.142 4.142 6 C -0.179 4.179 7 C -0.020 4.020 8 N -0.222 5.222 9 C -0.058 4.058 10 C -0.069 4.069 11 N -0.256 5.256 12 C -0.050 4.050 13 C -0.047 4.047 14 C -0.180 4.180 15 C -0.158 4.158 16 C 0.002 3.998 17 C -0.549 4.549 18 H 0.083 0.917 19 C -0.201 4.201 20 N -0.579 5.579 21 Si 0.780 3.220 22 H -0.201 1.201 23 H -0.213 1.213 24 H -0.188 1.188 25 C -0.078 4.078 26 C -0.051 4.051 27 H 0.087 0.913 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.161 0.839 31 H 0.162 0.838 32 H 0.153 0.847 33 H 0.135 0.865 34 H 0.063 0.937 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.054 0.946 38 H 0.075 0.925 39 H 0.048 0.952 40 H 0.062 0.938 41 H 0.078 0.922 42 H 0.065 0.935 43 H 0.047 0.953 44 H 0.084 0.916 45 H 0.053 0.947 46 H 0.002 0.998 47 H 0.002 0.998 48 H 0.068 0.932 49 H 0.052 0.948 50 H 0.110 0.890 51 H 0.057 0.943 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.805 27.135 -3.752 28.002 hybrid contribution -0.003 -1.402 0.330 1.440 sum 5.802 25.734 -3.422 26.601 Atomic orbital electron populations 1.20641 0.90150 1.03017 1.02246 1.20035 0.97101 0.91641 0.99324 1.21280 0.94606 0.97701 1.00280 1.21453 0.94410 0.98726 0.99699 1.21267 1.00730 0.92124 1.00045 1.21743 0.94605 0.99147 1.02389 1.18805 0.90605 0.90789 1.01770 1.59707 1.52663 1.02600 1.07204 1.22157 0.96516 0.91236 0.95901 1.22203 0.98930 0.95276 0.90530 1.62098 1.53723 1.03280 1.06502 1.22072 0.94437 0.89531 0.98927 1.20417 0.96050 0.93625 0.94641 1.21878 0.99931 0.99712 0.96490 1.21460 0.94799 1.00232 0.99262 1.19027 0.93982 0.91930 0.94819 1.21588 1.21040 0.95270 1.16967 0.91740 1.25904 0.95833 1.00261 0.98136 1.70105 1.31817 1.16455 1.39534 0.85596 0.79234 0.77927 0.79216 1.20070 1.21295 1.18809 1.22474 0.95860 0.91706 0.97765 1.22104 0.99207 0.94813 0.88980 0.91310 0.90833 0.91573 0.83916 0.83815 0.84655 0.86487 0.93740 0.89750 0.90025 0.94645 0.92533 0.95206 0.93756 0.92168 0.93548 0.95346 0.91639 0.94697 0.99781 0.99790 0.93208 0.94765 0.88985 0.94277 0.89771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.68 9.82 71.24 0.70 -0.98 16 2 C -0.08 -1.48 5.90 -19.74 -0.12 -1.59 16 3 C -0.12 -1.82 9.71 22.25 0.22 -1.60 16 4 C -0.12 -1.77 10.04 22.29 0.22 -1.55 16 5 C -0.12 -1.99 10.04 22.25 0.22 -1.77 16 6 C -0.16 -3.11 9.01 22.40 0.20 -2.91 16 7 C 0.07 1.54 4.73 38.21 0.18 1.72 16 8 N -0.50 -10.89 3.56 -694.80 -2.47 -13.36 16 9 C 0.07 1.50 5.10 86.31 0.44 1.94 16 10 C 0.06 1.45 5.48 86.31 0.47 1.92 16 11 N -0.53 -14.95 3.46 -895.69 -3.10 -18.05 16 12 C 0.08 2.68 4.20 86.30 0.36 3.05 16 13 C -0.05 -1.86 0.61 -52.18 -0.03 -1.89 16 14 C -0.12 -4.52 7.19 71.98 0.52 -4.00 16 15 C -0.10 -3.85 7.82 71.98 0.56 -3.28 16 16 C 0.04 2.08 4.03 29.85 0.12 2.20 16 17 C -0.51 -28.36 7.25 25.60 0.19 -28.17 16 18 H 0.06 3.45 6.00 -2.91 -0.02 3.44 16 19 C 0.00 -0.27 5.46 84.65 0.46 0.19 16 20 N -0.94 -57.54 13.29 21.44 0.28 -57.25 16 21 Si 0.95 44.71 29.54 68.60 2.03 46.73 16 22 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 23 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 24 H -0.26 -11.80 7.11 99.48 0.71 -11.10 16 25 C 0.05 1.27 5.14 86.31 0.44 1.71 16 26 C 0.08 1.69 5.49 86.31 0.47 2.16 16 27 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.07 0.94 8.12 -2.39 -0.02 0.92 16 29 H 0.07 1.27 7.31 -2.38 -0.02 1.25 16 30 H 0.14 1.48 8.06 -2.91 -0.02 1.46 16 31 H 0.14 1.29 8.06 -2.91 -0.02 1.26 16 32 H 0.14 1.66 8.06 -2.91 -0.02 1.63 16 33 H 0.12 2.32 6.68 -2.91 -0.02 2.30 16 34 H 0.04 1.00 6.66 -2.39 -0.02 0.99 16 35 H 0.08 1.70 8.13 -2.38 -0.02 1.68 16 36 H 0.08 1.97 7.98 -2.39 -0.02 1.95 16 37 H 0.04 0.90 8.14 -2.38 -0.02 0.88 16 38 H 0.06 2.01 7.64 -2.39 -0.02 1.99 16 39 H 0.03 1.05 7.59 -2.39 -0.02 1.03 16 40 H 0.04 1.85 6.27 -2.39 -0.01 1.83 16 41 H 0.06 1.94 7.12 -2.39 -0.02 1.92 16 42 H 0.05 1.57 6.68 -2.39 -0.02 1.55 16 43 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.06 2.22 7.39 -2.39 -0.02 2.20 16 45 H 0.03 1.44 6.62 -2.39 -0.02 1.42 16 46 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 47 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 48 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 49 H 0.03 0.90 8.12 -2.39 -0.02 0.88 16 50 H 0.09 2.42 4.49 -2.39 -0.01 2.41 16 51 H 0.04 0.94 8.07 -2.39 -0.02 0.92 16 52 H 0.08 1.74 8.13 -2.39 -0.02 1.73 16 Total: -1.00 -63.37 390.38 3.24 -60.13 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: 0.87 Total: 14.65 kcal Atomic # 6 Polarization: -38.49 SS G_CDS: 5.64 Total: -32.85 kcal Atomic # 7 Polarization: -83.37 SS G_CDS: -5.29 Total: -88.67 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.73 kcal Total: -63.37 3.24 -60.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162449373.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.105 kcal (2) G-P(sol) polarization free energy of solvation -63.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds