Wall clock time and date at job start Tue Mar 31 2020 11:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47070 * 2 1 4 4 C 1.53004 * 109.47243 * 239.99913 * 2 1 3 5 5 C 1.50701 * 109.46751 * 59.99905 * 4 2 1 6 6 H 1.07999 * 120.00050 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00208 * 180.02562 * 5 4 2 8 8 N 1.31519 * 119.99445 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00322 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47172 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47435 * 120.00321 * 9 7 5 12 12 H 1.48499 * 109.47144 * 239.99904 * 9 7 5 13 13 C 1.53007 * 109.47236 * 120.00173 * 2 1 3 14 14 N 1.46900 * 109.47028 * 299.99993 * 13 2 1 15 15 C 1.46897 * 110.99736 * 180.02562 * 14 13 2 16 16 C 1.53004 * 109.46986 * 179.97438 * 15 14 13 17 17 N 1.46894 * 109.47231 * 174.56910 * 16 15 14 18 18 C 1.47164 * 111.00444 * 53.69196 * 17 16 15 19 19 C 1.52899 * 108.50399 * 52.15706 * 18 17 16 20 20 C 1.50717 * 109.95458 * 50.39480 * 19 18 17 21 21 C 1.38683 * 118.48908 * 163.47504 * 20 19 18 22 22 C 1.38030 * 120.35145 * 179.97438 * 21 20 19 23 23 C 1.38260 * 119.82593 * 359.54580 * 22 21 20 24 24 C 1.38017 * 119.86971 * 0.32823 * 23 22 21 25 25 C 1.37834 * 121.66479 * 343.09237 * 20 19 18 26 26 C 1.46629 * 111.00249 * 176.68673 * 17 16 15 27 27 H 1.09005 * 109.47380 * 299.99644 * 1 2 3 28 28 H 1.08994 * 109.47465 * 60.00248 * 1 2 3 29 29 H 1.09001 * 109.47192 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46540 * 180.02562 * 3 2 1 31 31 H 1.08993 * 109.47221 * 299.99885 * 3 2 1 32 32 H 1.08995 * 109.47094 * 60.00379 * 3 2 1 33 33 H 1.08994 * 109.47225 * 179.97438 * 4 2 1 34 34 H 1.08996 * 109.47129 * 300.00482 * 4 2 1 35 35 H 0.97006 * 119.99492 * 179.97438 * 8 7 5 36 36 H 1.09007 * 109.46893 * 179.97438 * 13 2 1 37 37 H 1.09001 * 109.46730 * 60.00150 * 13 2 1 38 38 H 1.00901 * 110.99828 * 56.04241 * 14 13 2 39 39 H 1.09003 * 109.47350 * 60.00031 * 15 14 13 40 40 H 1.08996 * 109.47244 * 300.00038 * 15 14 13 41 41 H 1.09000 * 109.46960 * 54.56199 * 16 15 14 42 42 H 1.09008 * 109.47214 * 294.56429 * 16 15 14 43 43 H 1.08995 * 109.63271 * 171.86068 * 18 17 16 44 44 H 1.09004 * 109.62865 * 292.45477 * 18 17 16 45 45 H 1.08994 * 109.39301 * 170.54110 * 19 18 17 46 46 H 1.09003 * 109.39019 * 290.34603 * 19 18 17 47 47 H 1.08003 * 119.82088 * 359.75449 * 21 20 19 48 48 H 1.07998 * 120.08928 * 179.82610 * 22 21 20 49 49 H 1.08008 * 120.06636 * 180.34029 * 23 22 21 50 50 H 1.07999 * 119.80985 * 179.97438 * 24 23 22 51 51 H 1.09000 * 109.30349 * 168.78675 * 26 17 16 52 52 H 1.09000 * 109.30033 * 49.41177 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9170 0.8675 -2.3806 7 6 1.8702 -0.4821 -3.7320 8 7 2.6263 -1.5514 -3.8526 9 14 1.2481 0.3989 -5.2571 10 1 0.4235 1.5658 -4.8530 11 1 2.4033 0.8647 -6.0657 12 1 0.4223 -0.5339 -6.0654 13 6 2.0400 -0.7213 1.2493 14 7 1.5503 -0.0288 2.4487 15 6 2.0219 -0.6947 3.6703 16 6 1.4933 0.0539 4.8956 17 7 1.8550 -0.6835 6.1135 18 6 3.3020 -0.9470 6.1605 19 6 4.0429 0.3736 5.9483 20 6 3.4989 1.4244 6.8819 21 6 4.2486 2.5713 7.0958 22 6 3.7868 3.5585 7.9427 23 6 2.5660 3.4075 8.5739 24 6 1.8179 2.2676 8.3597 25 6 2.2827 1.2723 7.5125 26 6 1.4324 0.0450 7.3138 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.1299 1.4424 -0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 3.1299 -0.7209 -1.2495 34 1 1.6766 -1.7489 -1.2493 35 1 2.8600 -1.8832 -4.7337 36 1 3.1300 -0.7217 1.2490 37 1 1.6766 -1.7490 1.2492 38 1 0.5438 0.0413 2.4401 39 1 3.1118 -0.6941 3.6868 40 1 1.6588 -1.7222 3.6873 41 1 0.4085 0.1377 4.8301 42 1 1.9334 1.0506 4.9302 43 1 3.5671 -1.3634 7.1323 44 1 3.5722 -1.6493 5.3719 45 1 5.1049 0.2287 6.1461 46 1 3.9083 0.7025 4.9178 47 1 5.2005 2.6910 6.5998 48 1 4.3755 4.4487 8.1085 49 1 2.1984 4.1800 9.2331 50 1 0.8645 2.1504 8.8535 51 1 1.5300 -0.6054 8.1830 52 1 0.3895 0.3429 7.2060 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174255192.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:25 Heat of formation + Delta-G solvation = 12.719189 kcal Electronic energy + Delta-G solvation = -26570.468462 eV Core-core repulsion = 23147.652044 eV Total energy + Delta-G solvation = -3422.816418 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.77558 -38.07261 -37.29317 -34.39947 -32.99760 -32.30152 -31.35777 -29.47296 -28.63743 -26.85868 -26.30532 -25.22607 -24.29781 -23.79681 -22.43280 -22.24294 -21.44422 -19.38496 -17.79305 -16.92014 -16.30038 -16.26362 -16.12551 -15.40862 -15.27200 -14.91478 -14.60934 -14.25502 -14.00195 -13.71708 -13.62126 -13.45813 -13.19353 -12.78930 -12.60760 -12.52459 -12.33560 -12.02546 -11.98059 -11.82727 -11.71516 -11.47556 -11.25863 -11.18076 -10.94980 -10.85452 -10.74485 -10.72180 -10.47182 -10.23717 -10.08266 -9.66126 -9.02832 -8.99681 -8.81098 -8.79945 -8.54839 -8.30403 -8.06078 -5.94785 -3.94638 1.08388 1.11787 3.33398 3.41244 3.44825 3.47373 3.64328 4.41840 4.45798 4.50146 4.63148 4.65571 4.73467 4.86251 4.90199 4.97487 5.16189 5.19428 5.25682 5.29712 5.38803 5.41165 5.49668 5.57159 5.61562 5.70320 5.72736 5.74948 5.77697 5.85355 5.96457 6.01589 6.06337 6.17176 6.25112 6.28899 6.34740 6.36377 6.53646 6.68499 6.75040 6.75753 6.82059 6.84997 6.85343 7.23323 7.25320 7.28477 7.42940 7.69363 7.73562 7.87970 8.05850 8.50399 9.11003 9.68096 11.16942 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.023755 B = 0.002285 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.429166 B =12249.009969 C =12563.316328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.058 4.058 3 C -0.116 4.116 4 C 0.033 3.967 5 C -0.505 4.505 6 H 0.059 0.941 7 C 0.053 3.947 8 N -0.898 5.898 9 Si 0.887 3.113 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.286 1.286 13 C 0.072 3.928 14 N -0.687 5.687 15 C 0.058 3.942 16 C 0.052 3.948 17 N -0.526 5.526 18 C 0.050 3.950 19 C -0.124 4.124 20 C -0.071 4.071 21 C -0.118 4.118 22 C -0.121 4.121 23 C -0.125 4.125 24 C -0.115 4.115 25 C -0.114 4.114 26 C 0.092 3.908 27 H 0.033 0.967 28 H 0.064 0.936 29 H 0.040 0.960 30 H 0.038 0.962 31 H 0.054 0.946 32 H 0.042 0.958 33 H 0.015 0.985 34 H 0.013 0.987 35 H 0.258 0.742 36 H 0.064 0.936 37 H 0.023 0.977 38 H 0.338 0.662 39 H 0.069 0.931 40 H 0.034 0.966 41 H 0.072 0.928 42 H 0.050 0.950 43 H 0.075 0.925 44 H 0.086 0.914 45 H 0.079 0.921 46 H 0.089 0.911 47 H 0.121 0.879 48 H 0.120 0.880 49 H 0.120 0.880 50 H 0.121 0.879 51 H 0.088 0.912 52 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.354 5.316 26.735 27.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.058 4.058 3 C -0.173 4.173 4 C -0.005 4.005 5 C -0.543 4.543 6 H 0.078 0.922 7 C -0.147 4.147 8 N -0.538 5.538 9 Si 0.716 3.284 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.212 1.212 13 C -0.056 4.056 14 N -0.319 5.319 15 C -0.072 4.072 16 C -0.076 4.076 17 N -0.247 5.247 18 C -0.078 4.078 19 C -0.162 4.162 20 C -0.071 4.071 21 C -0.136 4.136 22 C -0.139 4.139 23 C -0.143 4.143 24 C -0.133 4.133 25 C -0.116 4.116 26 C -0.036 4.036 27 H 0.052 0.948 28 H 0.083 0.917 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.033 0.967 34 H 0.031 0.969 35 H 0.068 0.932 36 H 0.083 0.917 37 H 0.042 0.958 38 H 0.157 0.843 39 H 0.088 0.912 40 H 0.052 0.948 41 H 0.091 0.909 42 H 0.068 0.932 43 H 0.094 0.906 44 H 0.104 0.896 45 H 0.098 0.902 46 H 0.107 0.893 47 H 0.139 0.861 48 H 0.138 0.862 49 H 0.138 0.862 50 H 0.139 0.861 51 H 0.106 0.894 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.675 5.179 26.579 27.088 hybrid contribution -0.297 0.504 -0.896 1.070 sum 0.378 5.683 25.684 26.308 Atomic orbital electron populations 1.21768 0.96094 1.00370 1.00398 1.20623 0.94727 0.96077 0.94398 1.21593 0.99698 0.95861 1.00130 1.19133 0.96104 0.95010 0.90220 1.21277 1.30640 1.11814 0.90597 0.92250 1.25024 0.95451 0.95145 0.99072 1.69984 1.37392 1.23254 1.23139 0.86608 0.78596 0.79726 0.83505 1.19784 1.21172 1.21207 1.22086 0.99650 0.94691 0.89210 1.60517 1.16359 1.53855 1.01201 1.21968 1.00214 0.95746 0.89238 1.22145 1.00705 0.96280 0.88503 1.62668 1.15048 1.45115 1.01878 1.22255 0.86747 0.95931 1.02872 1.21214 1.00613 0.94941 0.99465 1.19574 0.94077 0.95850 0.97624 1.21127 1.00016 0.93705 0.98763 1.21095 0.96448 0.98938 0.97383 1.21079 0.95115 0.97811 1.00279 1.21063 0.99900 0.93797 0.98546 1.20393 0.95612 0.97662 0.97897 1.21120 0.97998 0.90786 0.93709 0.94814 0.91737 0.94091 0.94260 0.92727 0.93936 0.96701 0.96893 0.93249 0.91714 0.95834 0.84321 0.91243 0.94766 0.90948 0.93154 0.90605 0.89561 0.90233 0.89276 0.86136 0.86164 0.86196 0.86129 0.89367 0.89620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.41 7.89 37.15 0.29 -2.12 16 2 C -0.06 -1.16 0.60 -154.50 -0.09 -1.25 16 3 C -0.12 -2.26 8.06 37.16 0.30 -1.96 16 4 C 0.03 0.83 4.04 -27.88 -0.11 0.72 16 5 C -0.50 -13.87 7.65 -34.44 -0.26 -14.13 16 6 H 0.06 1.59 5.68 -52.49 -0.30 1.30 16 7 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 8 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16 9 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 10 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 C 0.07 1.25 4.65 -3.82 -0.02 1.24 16 14 N -0.69 -9.94 5.71 -113.77 -0.65 -10.59 16 15 C 0.06 0.72 4.90 -3.82 -0.02 0.70 16 16 C 0.05 0.57 4.61 -3.82 -0.02 0.55 16 17 N -0.53 -5.19 5.12 -236.19 -1.21 -6.39 16 18 C 0.05 0.45 5.41 -3.73 -0.02 0.43 16 19 C -0.12 -1.15 5.05 -27.93 -0.14 -1.29 16 20 C -0.07 -0.71 5.05 -104.60 -0.53 -1.24 16 21 C -0.12 -1.13 9.66 -39.49 -0.38 -1.51 16 22 C -0.12 -1.06 10.05 -39.65 -0.40 -1.46 16 23 C -0.12 -1.05 10.05 -39.65 -0.40 -1.45 16 24 C -0.11 -1.00 9.65 -39.48 -0.38 -1.38 16 25 C -0.11 -1.09 5.24 -104.62 -0.55 -1.64 16 26 C 0.09 0.80 5.54 -5.16 -0.03 0.77 16 27 H 0.03 0.53 6.57 -51.93 -0.34 0.19 16 28 H 0.06 1.31 6.62 -51.93 -0.34 0.96 16 29 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.05 1.14 6.62 -51.93 -0.34 0.80 16 32 H 0.04 0.75 7.60 -51.93 -0.39 0.36 16 33 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 36 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.34 4.73 6.77 -39.29 -0.27 4.46 16 39 H 0.07 0.86 5.79 -51.93 -0.30 0.56 16 40 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.05 0.62 5.76 -51.92 -0.30 0.32 16 43 H 0.08 0.63 8.05 -51.93 -0.42 0.21 16 44 H 0.09 0.78 6.82 -51.93 -0.35 0.43 16 45 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.09 0.95 5.90 -51.93 -0.31 0.64 16 47 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 48 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 49 H 0.12 0.76 8.06 -52.48 -0.42 0.34 16 50 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 51 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 52 H 0.09 0.69 8.06 -51.93 -0.42 0.27 16 LS Contribution 390.71 15.07 5.89 5.89 Total: -1.00 -29.84 390.71 -12.25 -42.09 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -9.14 Total: 2.14 kcal Atomic # 6 Polarization: -20.73 SS G_CDS: -2.85 Total: -23.59 kcal Atomic # 7 Polarization: -42.09 SS G_CDS: -1.12 Total: -43.21 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -29.84 -12.25 -42.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174255192.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.809 kcal (2) G-P(sol) polarization free energy of solvation -29.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds