Wall clock time and date at job start Tue Mar 31 2020 11:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47070 * 2 1 4 4 C 1.53004 * 109.47243 * 239.99913 * 2 1 3 5 5 C 1.50701 * 109.46751 * 59.99905 * 4 2 1 6 6 H 1.07999 * 120.00050 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00208 * 180.02562 * 5 4 2 8 8 N 1.31519 * 119.99445 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00322 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47172 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47435 * 120.00321 * 9 7 5 12 12 H 1.48499 * 109.47144 * 239.99904 * 9 7 5 13 13 C 1.53007 * 109.47236 * 120.00173 * 2 1 3 14 14 N 1.46900 * 109.47028 * 299.99993 * 13 2 1 15 15 C 1.46897 * 110.99736 * 180.02562 * 14 13 2 16 16 C 1.53004 * 109.46986 * 179.97438 * 15 14 13 17 17 N 1.46894 * 109.47231 * 174.56910 * 16 15 14 18 18 C 1.47164 * 111.00444 * 53.69196 * 17 16 15 19 19 C 1.52899 * 108.50399 * 52.15706 * 18 17 16 20 20 C 1.50717 * 109.95458 * 50.39480 * 19 18 17 21 21 C 1.38683 * 118.48908 * 163.47504 * 20 19 18 22 22 C 1.38030 * 120.35145 * 179.97438 * 21 20 19 23 23 C 1.38260 * 119.82593 * 359.54580 * 22 21 20 24 24 C 1.38017 * 119.86971 * 0.32823 * 23 22 21 25 25 C 1.37834 * 121.66479 * 343.09237 * 20 19 18 26 26 C 1.46629 * 111.00249 * 176.68673 * 17 16 15 27 27 H 1.09005 * 109.47380 * 299.99644 * 1 2 3 28 28 H 1.08994 * 109.47465 * 60.00248 * 1 2 3 29 29 H 1.09001 * 109.47192 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46540 * 180.02562 * 3 2 1 31 31 H 1.08993 * 109.47221 * 299.99885 * 3 2 1 32 32 H 1.08995 * 109.47094 * 60.00379 * 3 2 1 33 33 H 1.08994 * 109.47225 * 179.97438 * 4 2 1 34 34 H 1.08996 * 109.47129 * 300.00482 * 4 2 1 35 35 H 0.97006 * 119.99492 * 179.97438 * 8 7 5 36 36 H 1.09007 * 109.46893 * 179.97438 * 13 2 1 37 37 H 1.09001 * 109.46730 * 60.00150 * 13 2 1 38 38 H 1.00901 * 110.99828 * 56.04241 * 14 13 2 39 39 H 1.09003 * 109.47350 * 60.00031 * 15 14 13 40 40 H 1.08996 * 109.47244 * 300.00038 * 15 14 13 41 41 H 1.09000 * 109.46960 * 54.56199 * 16 15 14 42 42 H 1.09008 * 109.47214 * 294.56429 * 16 15 14 43 43 H 1.08995 * 109.63271 * 171.86068 * 18 17 16 44 44 H 1.09004 * 109.62865 * 292.45477 * 18 17 16 45 45 H 1.08994 * 109.39301 * 170.54110 * 19 18 17 46 46 H 1.09003 * 109.39019 * 290.34603 * 19 18 17 47 47 H 1.08003 * 119.82088 * 359.75449 * 21 20 19 48 48 H 1.07998 * 120.08928 * 179.82610 * 22 21 20 49 49 H 1.08008 * 120.06636 * 180.34029 * 23 22 21 50 50 H 1.07999 * 119.80985 * 179.97438 * 24 23 22 51 51 H 1.09000 * 109.30349 * 168.78675 * 26 17 16 52 52 H 1.09000 * 109.30033 * 49.41177 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9170 0.8675 -2.3806 7 6 1.8702 -0.4821 -3.7320 8 7 2.6263 -1.5514 -3.8526 9 14 1.2481 0.3989 -5.2571 10 1 0.4235 1.5658 -4.8530 11 1 2.4033 0.8647 -6.0657 12 1 0.4223 -0.5339 -6.0654 13 6 2.0400 -0.7213 1.2493 14 7 1.5503 -0.0288 2.4487 15 6 2.0219 -0.6947 3.6703 16 6 1.4933 0.0539 4.8956 17 7 1.8550 -0.6835 6.1135 18 6 3.3020 -0.9470 6.1605 19 6 4.0429 0.3736 5.9483 20 6 3.4989 1.4244 6.8819 21 6 4.2486 2.5713 7.0958 22 6 3.7868 3.5585 7.9427 23 6 2.5660 3.4075 8.5739 24 6 1.8179 2.2676 8.3597 25 6 2.2827 1.2723 7.5125 26 6 1.4324 0.0450 7.3138 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.1299 1.4424 -0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 3.1299 -0.7209 -1.2495 34 1 1.6766 -1.7489 -1.2493 35 1 2.8600 -1.8832 -4.7337 36 1 3.1300 -0.7217 1.2490 37 1 1.6766 -1.7490 1.2492 38 1 0.5438 0.0413 2.4401 39 1 3.1118 -0.6941 3.6868 40 1 1.6588 -1.7222 3.6873 41 1 0.4085 0.1377 4.8301 42 1 1.9334 1.0506 4.9302 43 1 3.5671 -1.3634 7.1323 44 1 3.5722 -1.6493 5.3719 45 1 5.1049 0.2287 6.1461 46 1 3.9083 0.7025 4.9178 47 1 5.2005 2.6910 6.5998 48 1 4.3755 4.4487 8.1085 49 1 2.1984 4.1800 9.2331 50 1 0.8645 2.1504 8.8535 51 1 1.5300 -0.6054 8.1830 52 1 0.3895 0.3429 7.2060 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174255192.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:24 Heat of formation + Delta-G solvation = -4.076154 kcal Electronic energy + Delta-G solvation = -26571.196763 eV Core-core repulsion = 23147.652044 eV Total energy + Delta-G solvation = -3423.544719 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.47821 -39.29729 -38.35176 -35.79913 -34.23279 -33.67352 -32.22014 -30.15253 -29.80846 -28.70881 -27.88804 -26.59898 -25.15253 -24.88774 -23.82362 -23.08655 -22.37755 -20.18475 -19.39766 -18.32948 -17.59083 -17.16674 -17.07577 -16.54295 -16.27854 -16.16109 -15.64261 -15.46123 -15.12783 -14.96933 -14.61230 -14.58963 -14.10969 -14.02256 -13.92586 -13.81585 -13.55302 -13.31628 -13.10224 -12.86727 -12.69594 -12.65540 -12.53013 -12.39517 -12.32053 -12.25054 -12.15166 -12.03001 -11.92503 -11.83445 -11.51186 -11.36961 -10.85628 -10.71892 -10.50762 -9.68381 -9.48711 -9.33937 -9.26868 -8.13746 -6.20504 0.42189 0.45585 1.40197 1.41237 1.53436 2.43849 2.78433 2.83398 3.20231 3.51381 3.74390 3.85589 3.96250 4.00173 4.08831 4.17589 4.20666 4.22808 4.26833 4.33268 4.39721 4.50659 4.59138 4.61561 4.64442 4.70439 4.77040 4.80734 4.84126 4.86321 4.95096 5.00817 5.04351 5.08816 5.09566 5.11640 5.21981 5.22463 5.25399 5.51416 5.52581 5.54427 5.59008 5.60997 5.65431 5.67835 5.87808 5.93260 5.96174 6.09435 6.11739 6.12842 6.37583 6.54113 6.94796 7.46731 8.98834 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.023755 B = 0.002285 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.429166 B =12249.009969 C =12563.316328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.054 4.054 3 C -0.106 4.106 4 C 0.039 3.961 5 C -0.512 4.512 6 H 0.066 0.934 7 C -0.006 4.006 8 N -0.938 5.938 9 Si 0.956 3.044 10 H -0.261 1.261 11 H -0.283 1.283 12 H -0.282 1.282 13 C 0.086 3.914 14 N -0.682 5.682 15 C 0.064 3.936 16 C 0.064 3.936 17 N -0.530 5.530 18 C 0.051 3.949 19 C -0.118 4.118 20 C -0.089 4.089 21 C -0.135 4.135 22 C -0.129 4.129 23 C -0.131 4.131 24 C -0.121 4.121 25 C -0.125 4.125 26 C 0.093 3.907 27 H 0.067 0.933 28 H 0.046 0.954 29 H 0.037 0.963 30 H 0.029 0.971 31 H 0.038 0.962 32 H 0.066 0.934 33 H -0.016 1.016 34 H -0.016 1.016 35 H 0.259 0.741 36 H 0.055 0.945 37 H 0.017 0.983 38 H 0.344 0.656 39 H 0.068 0.932 40 H 0.032 0.968 41 H 0.076 0.924 42 H 0.039 0.961 43 H 0.085 0.915 44 H 0.083 0.917 45 H 0.087 0.913 46 H 0.073 0.927 47 H 0.126 0.874 48 H 0.137 0.863 49 H 0.141 0.859 50 H 0.140 0.860 51 H 0.099 0.901 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.922 6.676 28.312 29.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.055 4.055 3 C -0.163 4.163 4 C 0.001 3.999 5 C -0.550 4.550 6 H 0.084 0.916 7 C -0.202 4.202 8 N -0.580 5.580 9 Si 0.782 3.218 10 H -0.185 1.185 11 H -0.209 1.209 12 H -0.208 1.208 13 C -0.044 4.044 14 N -0.315 5.315 15 C -0.065 4.065 16 C -0.064 4.064 17 N -0.251 5.251 18 C -0.077 4.077 19 C -0.157 4.157 20 C -0.089 4.089 21 C -0.153 4.153 22 C -0.147 4.147 23 C -0.149 4.149 24 C -0.140 4.140 25 C -0.126 4.126 26 C -0.035 4.035 27 H 0.086 0.914 28 H 0.066 0.934 29 H 0.056 0.944 30 H 0.048 0.952 31 H 0.057 0.943 32 H 0.085 0.915 33 H 0.002 0.998 34 H 0.003 0.997 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.036 0.964 38 H 0.164 0.836 39 H 0.086 0.914 40 H 0.050 0.950 41 H 0.095 0.905 42 H 0.057 0.943 43 H 0.103 0.897 44 H 0.102 0.898 45 H 0.105 0.895 46 H 0.091 0.909 47 H 0.144 0.856 48 H 0.155 0.845 49 H 0.159 0.841 50 H 0.158 0.842 51 H 0.117 0.883 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.613 6.551 28.178 28.936 hybrid contribution 0.134 0.077 -1.308 1.317 sum -0.478 6.628 26.870 27.679 Atomic orbital electron populations 1.21685 0.94630 1.00445 1.01210 1.20484 0.95851 0.95994 0.93130 1.21492 0.99042 0.95339 1.00454 1.19022 0.94070 0.94044 0.92758 1.21642 1.30109 1.11805 0.91415 0.91607 1.25931 0.95768 0.95945 1.02605 1.70123 1.38922 1.24970 1.23940 0.85519 0.78110 0.78810 0.79361 1.18462 1.20877 1.20803 1.21778 0.98995 0.94205 0.89411 1.60437 1.16763 1.53515 1.00806 1.21941 1.00167 0.95611 0.88828 1.21954 1.00636 0.95432 0.88378 1.62677 1.15491 1.45053 1.01878 1.22268 0.86393 0.95756 1.03287 1.21137 1.01171 0.94931 0.98422 1.19732 0.94681 0.96257 0.98239 1.21333 1.00497 0.94064 0.99372 1.21381 0.96933 0.99339 0.97083 1.21405 0.94912 0.98284 1.00273 1.21352 1.00718 0.93594 0.98320 1.20553 0.95588 0.98267 0.98219 1.21182 0.98206 0.90673 0.93407 0.91386 0.93444 0.94415 0.95208 0.94282 0.91514 0.99778 0.99723 0.93193 0.92665 0.96442 0.83628 0.91392 0.94981 0.90548 0.94311 0.89689 0.89818 0.89483 0.90918 0.85640 0.84537 0.84128 0.84232 0.88255 0.88835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.42 7.89 71.98 0.57 -3.86 16 2 C -0.05 -2.16 0.60 -52.18 -0.03 -2.19 16 3 C -0.11 -4.07 8.06 71.98 0.58 -3.49 16 4 C 0.04 2.02 4.04 29.85 0.12 2.14 16 5 C -0.51 -28.48 7.65 25.60 0.20 -28.29 16 6 H 0.07 3.52 5.68 -2.91 -0.02 3.50 16 7 C -0.01 -0.34 5.46 84.65 0.46 0.12 16 8 N -0.94 -57.71 13.29 21.45 0.28 -57.43 16 9 Si 0.96 44.75 29.54 68.60 2.03 46.78 16 10 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 11 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 12 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 13 C 0.09 2.95 4.65 86.31 0.40 3.35 16 14 N -0.68 -18.75 5.71 -513.87 -2.94 -21.69 16 15 C 0.06 1.51 4.90 86.31 0.42 1.93 16 16 C 0.06 1.31 4.61 86.31 0.40 1.71 16 17 N -0.53 -9.62 5.12 -901.16 -4.61 -14.23 16 18 C 0.05 0.87 5.41 86.22 0.47 1.33 16 19 C -0.12 -2.13 5.05 29.82 0.15 -1.98 16 20 C -0.09 -1.70 5.05 -19.85 -0.10 -1.80 16 21 C -0.13 -2.47 9.66 22.33 0.22 -2.26 16 22 C -0.13 -2.08 10.05 22.23 0.22 -1.86 16 23 C -0.13 -1.95 10.05 22.22 0.22 -1.72 16 24 C -0.12 -1.87 9.65 22.33 0.22 -1.65 16 25 C -0.12 -2.19 5.24 -19.87 -0.10 -2.29 16 26 C 0.09 1.44 5.54 85.59 0.47 1.91 16 27 H 0.07 1.98 6.57 -2.38 -0.02 1.97 16 28 H 0.05 1.87 6.62 -2.39 -0.02 1.85 16 29 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.04 1.60 6.62 -2.39 -0.02 1.58 16 32 H 0.07 2.23 7.60 -2.39 -0.02 2.21 16 33 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 34 H -0.02 -0.90 8.14 -2.39 -0.02 -0.91 16 35 H 0.26 15.06 8.31 -92.70 -0.77 14.29 16 36 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 37 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 38 H 0.34 8.80 6.77 -89.69 -0.61 8.19 16 39 H 0.07 1.64 5.79 -2.39 -0.01 1.63 16 40 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.04 0.90 5.76 -2.38 -0.01 0.89 16 43 H 0.08 1.29 8.05 -2.39 -0.02 1.27 16 44 H 0.08 1.45 6.82 -2.39 -0.02 1.44 16 45 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 46 H 0.07 1.54 5.90 -2.39 -0.01 1.52 16 47 H 0.13 2.03 8.06 -2.91 -0.02 2.01 16 48 H 0.14 1.63 8.06 -2.91 -0.02 1.60 16 49 H 0.14 1.42 8.06 -2.91 -0.02 1.39 16 50 H 0.14 1.51 8.06 -2.91 -0.02 1.49 16 51 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 52 H 0.09 1.29 8.06 -2.39 -0.02 1.27 16 Total: -1.00 -64.62 390.71 -0.08 -64.70 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: 0.28 Total: 20.77 kcal Atomic # 6 Polarization: -43.78 SS G_CDS: 4.88 Total: -38.90 kcal Atomic # 7 Polarization: -86.09 SS G_CDS: -7.26 Total: -93.35 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -64.62 -0.08 -64.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174255192.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.624 kcal (2) G-P(sol) polarization free energy of solvation -64.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds