Wall clock time and date at job start Tue Mar 31 2020 11:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08992 * 109.47208 * 2 1 4 4 C 1.52995 * 109.47271 * 120.00142 * 2 1 3 5 5 N 1.46904 * 109.47211 * 174.99779 * 4 2 1 6 6 C 1.46900 * 110.99816 * 179.97438 * 5 4 2 7 7 C 1.53003 * 109.46951 * 179.97438 * 6 5 4 8 8 C 1.52999 * 109.47034 * 300.00120 * 7 6 5 9 9 C 1.53001 * 109.47061 * 60.00104 * 7 6 5 10 10 C 1.52995 * 109.46979 * 179.97438 * 7 6 5 11 11 C 1.50699 * 109.46976 * 179.97438 * 10 7 6 12 12 H 1.08003 * 120.00320 * 0.02562 * 11 10 7 13 13 C 1.37883 * 120.00188 * 179.97438 * 11 10 7 14 14 N 1.31513 * 120.00196 * 179.97438 * 13 11 10 15 15 Si 1.86799 * 119.99730 * 0.02562 * 13 11 10 16 16 H 1.48501 * 109.47296 * 89.99588 * 15 13 11 17 17 H 1.48506 * 109.46776 * 209.99535 * 15 13 11 18 18 H 1.48503 * 109.47165 * 329.99576 * 15 13 11 19 19 N 1.46900 * 109.46754 * 240.00107 * 2 1 3 20 20 C 1.47904 * 111.00324 * 69.86085 * 19 2 1 21 21 C 1.54591 * 102.62939 * 265.41758 * 20 19 2 22 22 C 1.51574 * 102.83106 * 334.44016 * 21 20 19 23 23 C 1.37919 * 131.56343 * 196.52033 * 22 21 20 24 24 C 1.38303 * 120.07992 * 179.79802 * 23 22 21 25 25 C 1.38307 * 119.88143 * 359.49570 * 24 23 22 26 26 C 1.37910 * 120.26663 * 0.35323 * 25 24 23 27 27 C 1.38970 * 107.94876 * 16.03978 * 22 21 20 28 28 H 1.08992 * 109.47179 * 59.99615 * 1 2 3 29 29 H 1.08996 * 109.46876 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46671 * 300.00045 * 1 2 3 31 31 H 1.09008 * 109.47175 * 294.99770 * 4 2 1 32 32 H 1.09004 * 109.47389 * 54.99328 * 4 2 1 33 33 H 1.00897 * 110.99659 * 56.04614 * 5 4 2 34 34 H 1.08997 * 109.47248 * 299.99874 * 6 5 4 35 35 H 1.08996 * 109.47292 * 60.00159 * 6 5 4 36 36 H 1.09000 * 109.46961 * 59.99836 * 8 7 6 37 37 H 1.08999 * 109.47206 * 180.02562 * 8 7 6 38 38 H 1.08996 * 109.47147 * 299.99761 * 8 7 6 39 39 H 1.08997 * 109.47243 * 60.00020 * 9 7 6 40 40 H 1.08994 * 109.47116 * 180.02562 * 9 7 6 41 41 H 1.09002 * 109.47103 * 299.99724 * 9 7 6 42 42 H 1.08997 * 109.47301 * 299.99965 * 10 7 6 43 43 H 1.08996 * 109.47211 * 60.00233 * 10 7 6 44 44 H 0.96993 * 120.00332 * 180.02562 * 14 13 11 45 45 H 1.08999 * 110.77879 * 23.70640 * 20 19 2 46 46 H 1.09000 * 110.77691 * 147.13250 * 20 19 2 47 47 H 1.09006 * 110.74248 * 92.77337 * 21 20 19 48 48 H 1.08999 * 110.74348 * 216.10373 * 21 20 19 49 49 H 1.07997 * 119.96329 * 359.51665 * 23 22 21 50 50 H 1.08002 * 120.06144 * 179.78223 * 24 23 22 51 51 H 1.07999 * 119.86731 * 180.36943 * 25 24 23 52 52 H 1.08000 * 119.90104 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5041 -0.8267 1.1903 6 6 4.0305 -1.5149 2.3766 7 6 5.5547 -1.6059 2.2791 8 6 5.9394 -2.3892 1.0224 9 6 6.1459 -0.1968 2.2027 10 6 6.1029 -2.3221 3.5149 11 6 7.6041 -2.4123 3.4185 12 1 8.1160 -1.9996 2.5617 13 6 8.3242 -3.0207 4.4247 14 7 9.6343 -3.0998 4.3404 15 14 7.4389 -3.7337 5.9070 16 1 7.0885 -5.1518 5.6394 17 1 8.3253 -3.6587 7.0962 18 1 6.1992 -2.9575 6.1638 19 7 2.0196 -0.6925 -1.1995 20 6 1.7481 0.1011 -2.4177 21 6 0.4065 -0.4869 -2.9120 22 6 0.4228 -1.8903 -2.3397 23 6 -0.3180 -3.0124 -2.6468 24 6 -0.1003 -4.1951 -1.9637 25 6 0.8691 -4.2537 -0.9790 26 6 1.6148 -3.1354 -0.6703 27 6 1.3967 -1.9377 -1.3494 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5138 0.8900 31 1 1.7517 -0.1583 2.1370 32 1 1.6054 -1.7198 1.2952 33 1 3.9280 0.0825 1.0823 34 1 3.7560 -0.9571 3.2719 35 1 3.6097 -2.5189 2.4308 36 1 5.5488 -1.8785 0.1422 37 1 7.0252 -2.4545 0.9531 38 1 5.5183 -3.3931 1.0768 39 1 5.8718 0.3613 3.0980 40 1 7.2316 -0.2616 2.1327 41 1 5.7553 0.3138 1.3224 42 1 5.8288 -1.7637 4.4099 43 1 5.6818 -3.3259 3.5698 44 1 10.1408 -3.5281 5.0480 45 1 1.6409 1.1582 -2.1746 46 1 2.5326 -0.0486 -3.1595 47 1 -0.4341 0.0822 -2.5148 48 1 0.3751 -0.5145 -4.0012 49 1 -1.0722 -2.9662 -3.4184 50 1 -0.6830 -5.0726 -2.2020 51 1 1.0431 -5.1790 -0.4499 52 1 2.3700 -3.1877 0.1000 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174256539.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:57 Heat of formation + Delta-G solvation = 36.203753 kcal Electronic energy + Delta-G solvation = -27560.738350 eV Core-core repulsion = 24138.940299 eV Total energy + Delta-G solvation = -3421.798051 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.29401 -37.84724 -37.09620 -34.85603 -32.68623 -31.80246 -31.01328 -29.24433 -28.57196 -27.71087 -26.32083 -26.19156 -24.00690 -23.13963 -22.35486 -21.67609 -21.24999 -20.12673 -17.78898 -16.88256 -16.66739 -16.12412 -15.92193 -15.51378 -15.09414 -14.83459 -14.56246 -14.02905 -13.84370 -13.58286 -13.33273 -13.10937 -12.89946 -12.80205 -12.62125 -12.43345 -12.38701 -12.24359 -12.07290 -11.94985 -11.75886 -11.71139 -11.26987 -11.00236 -10.89013 -10.84742 -10.76922 -10.66366 -10.43540 -10.27566 -9.72327 -9.63012 -9.45198 -9.18437 -8.85114 -8.82492 -8.45615 -7.96418 -7.86360 -5.95877 -3.91510 1.25958 1.36081 3.34945 3.42321 3.45933 3.50606 3.70854 4.30761 4.46691 4.51896 4.57761 4.75487 4.78961 4.94178 4.96939 5.04707 5.19060 5.27046 5.29820 5.37352 5.42422 5.47322 5.49724 5.55596 5.61385 5.63232 5.72983 5.77776 5.78748 5.87440 5.95457 6.00084 6.04494 6.22605 6.33602 6.34173 6.43753 6.48676 6.51087 6.70771 6.70972 6.78221 6.88879 6.93143 7.16058 7.23286 7.27367 7.29398 7.41067 7.43625 7.54060 7.77917 7.90668 8.64930 9.10809 9.67524 11.17385 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.019576 B = 0.003069 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.954631 B = 9119.890634 C = 9636.502709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.088 3.912 3 H 0.084 0.916 4 C 0.061 3.939 5 N -0.666 5.666 6 C 0.068 3.932 7 C -0.047 4.047 8 C -0.116 4.116 9 C -0.129 4.129 10 C -0.004 4.004 11 C -0.505 4.505 12 H 0.078 0.922 13 C 0.064 3.936 14 N -0.907 5.907 15 Si 0.875 3.125 16 H -0.279 1.279 17 H -0.290 1.290 18 H -0.267 1.267 19 N -0.465 5.465 20 C 0.049 3.951 21 C -0.112 4.112 22 C -0.147 4.147 23 C -0.096 4.096 24 C -0.139 4.139 25 C -0.108 4.108 26 C -0.105 4.105 27 C 0.112 3.888 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.028 0.972 32 H 0.073 0.927 33 H 0.339 0.661 34 H 0.018 0.982 35 H 0.062 0.938 36 H 0.049 0.951 37 H 0.057 0.943 38 H 0.036 0.964 39 H 0.037 0.963 40 H 0.068 0.932 41 H 0.037 0.963 42 H 0.011 0.989 43 H 0.009 0.991 44 H 0.261 0.739 45 H 0.081 0.919 46 H 0.089 0.911 47 H 0.081 0.919 48 H 0.080 0.920 49 H 0.114 0.886 50 H 0.120 0.880 51 H 0.124 0.876 52 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.142 5.674 -13.561 27.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.019 4.019 3 H 0.102 0.898 4 C -0.069 4.069 5 N -0.297 5.297 6 C -0.061 4.061 7 C -0.047 4.047 8 C -0.173 4.173 9 C -0.186 4.186 10 C -0.042 4.042 11 C -0.543 4.543 12 H 0.096 0.904 13 C -0.136 4.136 14 N -0.547 5.547 15 Si 0.703 3.297 16 H -0.205 1.205 17 H -0.216 1.216 18 H -0.192 1.192 19 N -0.181 5.181 20 C -0.078 4.078 21 C -0.150 4.150 22 C -0.150 4.150 23 C -0.114 4.114 24 C -0.157 4.157 25 C -0.126 4.126 26 C -0.124 4.124 27 C 0.016 3.984 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.046 0.954 32 H 0.091 0.909 33 H 0.158 0.842 34 H 0.036 0.964 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.055 0.945 39 H 0.056 0.944 40 H 0.087 0.913 41 H 0.056 0.944 42 H 0.029 0.971 43 H 0.027 0.973 44 H 0.071 0.929 45 H 0.099 0.901 46 H 0.107 0.893 47 H 0.099 0.901 48 H 0.098 0.902 49 H 0.132 0.868 50 H 0.138 0.862 51 H 0.142 0.858 52 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -22.403 5.051 -13.747 26.765 hybrid contribution -1.289 0.231 1.518 2.005 sum -23.692 5.282 -12.229 27.180 Atomic orbital electron populations 1.22656 0.96833 1.02891 1.02303 1.21859 0.92539 0.97613 0.89873 0.89756 1.22065 0.90380 1.00219 0.94197 1.60416 1.02887 1.25688 1.40750 1.22127 0.96595 0.97918 0.89466 1.20385 0.90879 0.95840 0.97594 1.21591 1.01302 0.98304 0.96122 1.21761 1.02481 0.95663 0.98732 1.19627 0.97236 0.94680 0.92672 1.21156 0.89588 1.36747 1.06774 0.90418 1.25020 0.94666 0.95907 0.98045 1.69909 1.05657 1.45108 1.33980 0.86853 0.79972 0.79867 0.82988 1.20466 1.21637 1.19224 1.60178 1.54882 1.00558 1.02443 1.23158 0.95576 0.97289 0.91787 1.21839 0.99189 0.92723 1.01286 1.20993 0.97424 0.95531 1.01013 1.20314 0.99380 0.91900 0.99824 1.20998 0.99594 0.97596 0.97541 1.20999 0.95835 0.98111 0.97689 1.20773 1.00316 0.90367 1.00975 1.19393 0.91788 0.91527 0.95714 0.91877 0.91891 0.92116 0.95373 0.90908 0.84211 0.96357 0.91964 0.93222 0.92434 0.94486 0.94367 0.91331 0.94444 0.97096 0.97275 0.92948 0.90064 0.89311 0.90099 0.90194 0.86765 0.86211 0.85839 0.84830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.65 7.96 37.16 0.30 -1.36 16 2 C 0.09 0.88 2.46 -67.71 -0.17 0.71 16 3 H 0.08 0.78 7.85 -51.93 -0.41 0.38 16 4 C 0.06 0.72 4.72 -3.82 -0.02 0.70 16 5 N -0.67 -9.15 5.44 -113.77 -0.62 -9.77 16 6 C 0.07 1.11 4.65 -3.82 -0.02 1.09 16 7 C -0.05 -0.90 0.60 -154.51 -0.09 -1.00 16 8 C -0.12 -2.27 8.06 37.16 0.30 -1.97 16 9 C -0.13 -2.39 7.89 37.16 0.29 -2.10 16 10 C 0.00 -0.10 3.11 -27.89 -0.09 -0.19 16 11 C -0.50 -14.08 8.20 -34.44 -0.28 -14.36 16 12 H 0.08 2.32 5.92 -52.48 -0.31 2.01 16 13 C 0.06 1.86 5.47 -17.82 -0.10 1.76 16 14 N -0.91 -28.07 13.96 55.43 0.77 -27.30 16 15 Si 0.88 22.01 27.47 -169.99 -4.67 17.34 16 16 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 17 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 18 H -0.27 -6.49 6.54 56.52 0.37 -6.12 16 19 N -0.46 -5.18 4.78 -161.50 -0.77 -5.95 16 20 C 0.05 0.43 6.71 -2.43 -0.02 0.42 16 21 C -0.11 -0.92 6.19 -26.62 -0.16 -1.08 16 22 C -0.15 -1.54 5.39 -104.04 -0.56 -2.10 16 23 C -0.10 -0.94 10.03 -39.67 -0.40 -1.34 16 24 C -0.14 -1.37 10.06 -39.53 -0.40 -1.76 16 25 C -0.11 -1.18 10.02 -39.68 -0.40 -1.58 16 26 C -0.10 -1.31 8.55 -39.27 -0.34 -1.64 16 27 C 0.11 1.33 4.06 -83.40 -0.34 0.99 16 28 H 0.06 0.49 5.24 -51.93 -0.27 0.22 16 29 H 0.06 0.65 6.68 -51.93 -0.35 0.30 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.03 0.32 8.14 -51.92 -0.42 -0.10 16 32 H 0.07 0.91 5.94 -51.93 -0.31 0.61 16 33 H 0.34 4.59 6.77 -39.29 -0.27 4.32 16 34 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.05 0.90 7.60 -51.93 -0.39 0.51 16 37 H 0.06 1.26 6.62 -51.93 -0.34 0.92 16 38 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.07 1.45 6.62 -51.93 -0.34 1.10 16 41 H 0.04 0.59 6.57 -51.93 -0.34 0.25 16 42 H 0.01 0.26 7.20 -51.93 -0.37 -0.11 16 43 H 0.01 0.22 7.57 -51.93 -0.39 -0.18 16 44 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 45 H 0.08 0.58 7.60 -51.93 -0.39 0.19 16 46 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.08 0.59 6.06 -51.93 -0.31 0.27 16 48 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 49 H 0.11 0.90 8.06 -52.49 -0.42 0.47 16 50 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 51 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 52 H 0.13 1.85 7.26 -52.49 -0.38 1.46 16 LS Contribution 385.64 15.07 5.81 5.81 Total: -1.00 -30.43 385.64 -10.97 -41.40 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -9.01 Total: 3.27 kcal Atomic # 6 Polarization: -22.32 SS G_CDS: -2.48 Total: -24.81 kcal Atomic # 7 Polarization: -42.40 SS G_CDS: -0.62 Total: -43.01 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.67 Total: 17.34 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -30.43 -10.97 -41.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174256539.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.605 kcal (2) G-P(sol) polarization free energy of solvation -30.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds