Wall clock time and date at job start Tue Mar 31 2020 11:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08992 * 109.47208 * 2 1 4 4 C 1.52995 * 109.47271 * 120.00142 * 2 1 3 5 5 N 1.46904 * 109.47211 * 174.99779 * 4 2 1 6 6 C 1.46900 * 110.99816 * 179.97438 * 5 4 2 7 7 C 1.53003 * 109.46951 * 179.97438 * 6 5 4 8 8 C 1.52999 * 109.47034 * 300.00120 * 7 6 5 9 9 C 1.53001 * 109.47061 * 60.00104 * 7 6 5 10 10 C 1.52995 * 109.46979 * 179.97438 * 7 6 5 11 11 C 1.50699 * 109.46976 * 179.97438 * 10 7 6 12 12 H 1.08003 * 120.00320 * 0.02562 * 11 10 7 13 13 C 1.37883 * 120.00188 * 179.97438 * 11 10 7 14 14 N 1.31513 * 120.00196 * 179.97438 * 13 11 10 15 15 Si 1.86799 * 119.99730 * 0.02562 * 13 11 10 16 16 H 1.48501 * 109.47296 * 89.99588 * 15 13 11 17 17 H 1.48506 * 109.46776 * 209.99535 * 15 13 11 18 18 H 1.48503 * 109.47165 * 329.99576 * 15 13 11 19 19 N 1.46900 * 109.46754 * 240.00107 * 2 1 3 20 20 C 1.47904 * 111.00324 * 69.86085 * 19 2 1 21 21 C 1.54591 * 102.62939 * 265.41758 * 20 19 2 22 22 C 1.51574 * 102.83106 * 334.44016 * 21 20 19 23 23 C 1.37919 * 131.56343 * 196.52033 * 22 21 20 24 24 C 1.38303 * 120.07992 * 179.79802 * 23 22 21 25 25 C 1.38307 * 119.88143 * 359.49570 * 24 23 22 26 26 C 1.37910 * 120.26663 * 0.35323 * 25 24 23 27 27 C 1.38970 * 107.94876 * 16.03978 * 22 21 20 28 28 H 1.08992 * 109.47179 * 59.99615 * 1 2 3 29 29 H 1.08996 * 109.46876 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46671 * 300.00045 * 1 2 3 31 31 H 1.09008 * 109.47175 * 294.99770 * 4 2 1 32 32 H 1.09004 * 109.47389 * 54.99328 * 4 2 1 33 33 H 1.00897 * 110.99659 * 56.04614 * 5 4 2 34 34 H 1.08997 * 109.47248 * 299.99874 * 6 5 4 35 35 H 1.08996 * 109.47292 * 60.00159 * 6 5 4 36 36 H 1.09000 * 109.46961 * 59.99836 * 8 7 6 37 37 H 1.08999 * 109.47206 * 180.02562 * 8 7 6 38 38 H 1.08996 * 109.47147 * 299.99761 * 8 7 6 39 39 H 1.08997 * 109.47243 * 60.00020 * 9 7 6 40 40 H 1.08994 * 109.47116 * 180.02562 * 9 7 6 41 41 H 1.09002 * 109.47103 * 299.99724 * 9 7 6 42 42 H 1.08997 * 109.47301 * 299.99965 * 10 7 6 43 43 H 1.08996 * 109.47211 * 60.00233 * 10 7 6 44 44 H 0.96993 * 120.00332 * 180.02562 * 14 13 11 45 45 H 1.08999 * 110.77879 * 23.70640 * 20 19 2 46 46 H 1.09000 * 110.77691 * 147.13250 * 20 19 2 47 47 H 1.09006 * 110.74248 * 92.77337 * 21 20 19 48 48 H 1.08999 * 110.74348 * 216.10373 * 21 20 19 49 49 H 1.07997 * 119.96329 * 359.51665 * 23 22 21 50 50 H 1.08002 * 120.06144 * 179.78223 * 24 23 22 51 51 H 1.07999 * 119.86731 * 180.36943 * 25 24 23 52 52 H 1.08000 * 119.90104 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5041 -0.8267 1.1903 6 6 4.0305 -1.5149 2.3766 7 6 5.5547 -1.6059 2.2791 8 6 5.9394 -2.3892 1.0224 9 6 6.1459 -0.1968 2.2027 10 6 6.1029 -2.3221 3.5149 11 6 7.6041 -2.4123 3.4185 12 1 8.1160 -1.9996 2.5617 13 6 8.3242 -3.0207 4.4247 14 7 9.6343 -3.0998 4.3404 15 14 7.4389 -3.7337 5.9070 16 1 7.0885 -5.1518 5.6394 17 1 8.3253 -3.6587 7.0962 18 1 6.1992 -2.9575 6.1638 19 7 2.0196 -0.6925 -1.1995 20 6 1.7481 0.1011 -2.4177 21 6 0.4065 -0.4869 -2.9120 22 6 0.4228 -1.8903 -2.3397 23 6 -0.3180 -3.0124 -2.6468 24 6 -0.1003 -4.1951 -1.9637 25 6 0.8691 -4.2537 -0.9790 26 6 1.6148 -3.1354 -0.6703 27 6 1.3967 -1.9377 -1.3494 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5138 0.8900 31 1 1.7517 -0.1583 2.1370 32 1 1.6054 -1.7198 1.2952 33 1 3.9280 0.0825 1.0823 34 1 3.7560 -0.9571 3.2719 35 1 3.6097 -2.5189 2.4308 36 1 5.5488 -1.8785 0.1422 37 1 7.0252 -2.4545 0.9531 38 1 5.5183 -3.3931 1.0768 39 1 5.8718 0.3613 3.0980 40 1 7.2316 -0.2616 2.1327 41 1 5.7553 0.3138 1.3224 42 1 5.8288 -1.7637 4.4099 43 1 5.6818 -3.3259 3.5698 44 1 10.1408 -3.5281 5.0480 45 1 1.6409 1.1582 -2.1746 46 1 2.5326 -0.0486 -3.1595 47 1 -0.4341 0.0822 -2.5148 48 1 0.3751 -0.5145 -4.0012 49 1 -1.0722 -2.9662 -3.4184 50 1 -0.6830 -5.0726 -2.2020 51 1 1.0431 -5.1790 -0.4499 52 1 2.3700 -3.1877 0.1000 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174256539.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:56 Heat of formation + Delta-G solvation = 18.807725 kcal Electronic energy + Delta-G solvation = -27561.492699 eV Core-core repulsion = 24138.940299 eV Total energy + Delta-G solvation = -3422.552399 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.04372 -39.22196 -37.99880 -36.02058 -34.45463 -33.08582 -31.85271 -30.01890 -29.61088 -29.28803 -27.89142 -27.44438 -25.42672 -23.87883 -23.47162 -23.06436 -21.99944 -20.93876 -19.38031 -18.85841 -17.67253 -16.89934 -16.75010 -16.39919 -16.27525 -15.93916 -15.91561 -15.43296 -15.27672 -14.84333 -14.44142 -14.33231 -14.11808 -13.92719 -13.76285 -13.50707 -13.34623 -13.21997 -13.17920 -12.98292 -12.84042 -12.74363 -12.65998 -12.42455 -12.39654 -12.22757 -12.06432 -11.96298 -11.70565 -11.57850 -11.49274 -11.33057 -10.94170 -10.78144 -10.69702 -10.18051 -9.62539 -9.07770 -8.63463 -8.21360 -6.21386 0.48493 0.55855 1.35484 1.36444 1.47857 2.39498 2.75490 2.93387 3.13543 3.33524 3.72596 3.86272 3.99943 4.07695 4.15744 4.21525 4.23344 4.27778 4.33742 4.36395 4.43377 4.56240 4.60857 4.62866 4.73037 4.76370 4.79142 4.82313 4.85026 4.88794 4.95475 4.96477 5.06524 5.10474 5.11622 5.12944 5.22180 5.26110 5.32227 5.38953 5.46825 5.56066 5.58319 5.64888 5.65975 5.70139 5.78385 5.84213 5.95324 6.13253 6.29260 6.43950 6.49906 6.68544 6.85989 7.40908 8.95047 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.019576 B = 0.003069 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.954631 B = 9119.890634 C = 9636.502709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.092 3.908 3 H 0.097 0.903 4 C 0.064 3.936 5 N -0.665 5.665 6 C 0.083 3.917 7 C -0.045 4.045 8 C -0.103 4.103 9 C -0.121 4.121 10 C -0.002 4.002 11 C -0.502 4.502 12 H 0.044 0.956 13 C 0.000 4.000 14 N -0.955 5.955 15 Si 0.941 3.059 16 H -0.272 1.272 17 H -0.287 1.287 18 H -0.250 1.250 19 N -0.483 5.483 20 C 0.047 3.953 21 C -0.105 4.105 22 C -0.154 4.154 23 C -0.100 4.100 24 C -0.141 4.141 25 C -0.119 4.119 26 C -0.127 4.127 27 C 0.099 3.901 28 H 0.076 0.924 29 H 0.045 0.955 30 H 0.069 0.931 31 H 0.036 0.964 32 H 0.061 0.939 33 H 0.342 0.658 34 H 0.022 0.978 35 H 0.057 0.943 36 H 0.065 0.935 37 H 0.024 0.976 38 H 0.032 0.968 39 H 0.043 0.957 40 H 0.033 0.967 41 H 0.066 0.934 42 H 0.012 0.988 43 H 0.008 0.992 44 H 0.262 0.738 45 H 0.101 0.899 46 H 0.082 0.918 47 H 0.094 0.906 48 H 0.092 0.908 49 H 0.137 0.863 50 H 0.142 0.858 51 H 0.131 0.869 52 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.457 6.678 -14.129 30.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.015 4.015 3 H 0.115 0.885 4 C -0.066 4.066 5 N -0.297 5.297 6 C -0.047 4.047 7 C -0.046 4.046 8 C -0.160 4.160 9 C -0.178 4.178 10 C -0.040 4.040 11 C -0.540 4.540 12 H 0.062 0.938 13 C -0.195 4.195 14 N -0.597 5.597 15 Si 0.765 3.235 16 H -0.197 1.197 17 H -0.213 1.213 18 H -0.173 1.173 19 N -0.200 5.200 20 C -0.080 4.080 21 C -0.143 4.143 22 C -0.156 4.156 23 C -0.119 4.119 24 C -0.160 4.160 25 C -0.138 4.138 26 C -0.147 4.147 27 C 0.003 3.997 28 H 0.095 0.905 29 H 0.064 0.936 30 H 0.088 0.912 31 H 0.054 0.946 32 H 0.080 0.920 33 H 0.162 0.838 34 H 0.041 0.959 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.043 0.957 38 H 0.051 0.949 39 H 0.062 0.938 40 H 0.052 0.948 41 H 0.085 0.915 42 H 0.030 0.970 43 H 0.026 0.974 44 H 0.071 0.929 45 H 0.119 0.881 46 H 0.100 0.900 47 H 0.112 0.888 48 H 0.111 0.889 49 H 0.154 0.846 50 H 0.159 0.841 51 H 0.149 0.851 52 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -25.741 6.068 -14.329 30.079 hybrid contribution -0.227 -0.071 1.591 1.609 sum -25.967 5.997 -12.738 29.539 Atomic orbital electron populations 1.22561 0.95717 1.02089 1.03397 1.21839 0.93328 0.97637 0.88649 0.88511 1.22078 0.88668 1.00121 0.95692 1.60330 1.04381 1.25780 1.39246 1.21821 0.93816 0.98278 0.90764 1.20312 0.93305 0.95670 0.95284 1.21447 0.98968 0.98459 0.97150 1.21656 1.00196 0.95518 1.00443 1.19589 0.94384 0.95210 0.94818 1.21436 0.91894 1.35364 1.05344 0.93817 1.25924 0.95351 0.96725 1.01506 1.70063 1.07490 1.46830 1.35337 0.85798 0.79272 0.79403 0.78981 1.19702 1.21344 1.17342 1.60150 1.55480 1.00762 1.03566 1.23235 0.95794 0.98124 0.90827 1.21841 0.99159 0.91278 1.01985 1.21315 0.96897 0.96844 1.00590 1.20650 0.99569 0.91618 1.00037 1.21282 0.99210 0.98600 0.96874 1.21171 0.96187 0.98073 0.98342 1.20738 1.00840 0.91634 1.01468 1.19505 0.92475 0.91579 0.96186 0.90542 0.93564 0.91231 0.94554 0.92019 0.83815 0.95936 0.92441 0.91617 0.95693 0.94893 0.93762 0.94752 0.91498 0.96952 0.97350 0.92904 0.88109 0.89977 0.88783 0.88921 0.84556 0.84062 0.85136 0.87013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.68 7.96 71.98 0.57 -2.11 16 2 C 0.09 1.62 2.46 44.92 0.11 1.73 16 3 H 0.10 1.48 7.85 -2.39 -0.02 1.46 16 4 C 0.06 1.39 4.72 86.30 0.41 1.80 16 5 N -0.67 -17.24 5.44 -513.87 -2.79 -20.03 16 6 C 0.08 2.59 4.65 86.30 0.40 2.99 16 7 C -0.05 -1.75 0.60 -52.18 -0.03 -1.78 16 8 C -0.10 -4.10 8.06 71.98 0.58 -3.52 16 9 C -0.12 -4.43 7.89 71.98 0.57 -3.86 16 10 C 0.00 -0.10 3.11 29.85 0.09 -0.01 16 11 C -0.50 -28.83 8.20 25.60 0.21 -28.62 16 12 H 0.04 2.75 5.92 -2.91 -0.02 2.74 16 13 C 0.00 0.03 5.47 84.66 0.46 0.49 16 14 N -0.96 -61.02 13.96 21.45 0.30 -60.72 16 15 Si 0.94 45.55 27.47 68.60 1.88 47.43 16 16 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 17 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 18 H -0.25 -11.27 6.54 99.48 0.65 -10.62 16 19 N -0.48 -9.92 4.78 -664.87 -3.18 -13.10 16 20 C 0.05 0.71 6.71 86.65 0.58 1.29 16 21 C -0.10 -1.41 6.19 30.67 0.19 -1.22 16 22 C -0.15 -2.91 5.39 -19.49 -0.11 -3.02 16 23 C -0.10 -1.76 10.03 22.21 0.22 -1.53 16 24 C -0.14 -2.56 10.06 22.30 0.22 -2.33 16 25 C -0.12 -2.56 10.02 22.21 0.22 -2.34 16 26 C -0.13 -3.18 8.55 22.47 0.19 -2.98 16 27 C 0.10 2.24 4.06 38.29 0.16 2.40 16 28 H 0.08 0.94 5.24 -2.39 -0.01 0.92 16 29 H 0.05 0.86 6.68 -2.39 -0.02 0.85 16 30 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.04 0.74 8.14 -2.38 -0.02 0.72 16 32 H 0.06 1.51 5.94 -2.38 -0.01 1.49 16 33 H 0.34 8.46 6.77 -89.70 -0.61 7.85 16 34 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.06 2.38 7.60 -2.39 -0.02 2.36 16 37 H 0.02 1.12 6.62 -2.39 -0.02 1.11 16 38 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.03 1.48 6.62 -2.39 -0.02 1.46 16 41 H 0.07 2.03 6.57 -2.39 -0.02 2.02 16 42 H 0.01 0.58 7.20 -2.39 -0.02 0.56 16 43 H 0.01 0.39 7.57 -2.39 -0.02 0.37 16 44 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 45 H 0.10 1.11 7.60 -2.39 -0.02 1.09 16 46 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 47 H 0.09 1.03 6.06 -2.38 -0.01 1.01 16 48 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 49 H 0.14 1.72 8.06 -2.91 -0.02 1.69 16 50 H 0.14 1.85 8.06 -2.91 -0.02 1.83 16 51 H 0.13 2.45 8.06 -2.91 -0.02 2.43 16 52 H 0.11 3.20 7.26 -2.91 -0.02 3.18 16 Total: -1.00 -67.57 385.64 1.49 -66.08 By element: Atomic # 1 Polarization: 22.74 SS G_CDS: 0.23 Total: 22.97 kcal Atomic # 6 Polarization: -47.69 SS G_CDS: 5.06 Total: -42.63 kcal Atomic # 7 Polarization: -88.17 SS G_CDS: -5.68 Total: -93.85 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 1.88 Total: 47.43 kcal Total: -67.57 1.49 -66.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174256539.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.885 kcal (2) G-P(sol) polarization free energy of solvation -67.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds