Wall clock time and date at job start Tue Mar 31 2020 11:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.46956 * 2 1 4 4 C 1.52992 * 109.47675 * 239.99680 * 2 1 3 5 5 N 1.46897 * 109.47564 * 183.76258 * 4 2 1 6 6 C 1.46897 * 111.00461 * 174.88275 * 5 4 2 7 7 C 1.52994 * 109.47623 * 185.39026 * 6 5 4 8 8 C 1.53002 * 109.47468 * 303.31416 * 7 6 5 9 9 C 1.53001 * 109.46908 * 63.31031 * 7 6 5 10 10 C 1.52997 * 109.47594 * 183.30933 * 7 6 5 11 11 C 1.50697 * 109.47167 * 180.02562 * 10 7 6 12 12 H 1.07994 * 120.00581 * 0.02562 * 11 10 7 13 13 C 1.37884 * 119.99915 * 179.97438 * 11 10 7 14 14 N 1.31519 * 119.99716 * 0.02562 * 13 11 10 15 15 Si 1.86793 * 120.00106 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47262 * 60.00117 * 15 13 11 17 17 H 1.48500 * 109.47502 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47153 * 300.00431 * 15 13 11 19 19 N 1.46901 * 109.47036 * 119.98979 * 2 1 3 20 20 C 1.47914 * 110.99764 * 51.06321 * 19 2 1 21 21 C 1.54602 * 102.61986 * 265.48608 * 20 19 2 22 22 C 1.51571 * 102.83589 * 334.46290 * 21 20 19 23 23 C 1.37922 * 131.56466 * 196.34699 * 22 21 20 24 24 C 1.38301 * 120.08088 * 179.28538 * 23 22 21 25 25 C 1.38303 * 119.88764 * 359.97438 * 24 23 22 26 26 C 1.37909 * 120.25996 * 0.11341 * 25 24 23 27 27 C 1.38967 * 107.95333 * 15.93850 * 22 21 20 28 28 H 1.08993 * 109.47697 * 293.82665 * 1 2 3 29 29 H 1.08997 * 109.47283 * 53.83128 * 1 2 3 30 30 H 1.09007 * 109.46891 * 173.82654 * 1 2 3 31 31 H 1.09009 * 109.47301 * 303.76243 * 4 2 1 32 32 H 1.08998 * 109.47461 * 63.75961 * 4 2 1 33 33 H 1.00902 * 111.00261 * 298.84058 * 5 4 2 34 34 H 1.08996 * 109.47430 * 305.39554 * 6 5 4 35 35 H 1.09010 * 109.46639 * 65.39274 * 6 5 4 36 36 H 1.09005 * 109.47112 * 59.99410 * 8 7 6 37 37 H 1.08997 * 109.47552 * 179.97438 * 8 7 6 38 38 H 1.09003 * 109.46687 * 299.99764 * 8 7 6 39 39 H 1.09001 * 109.47193 * 65.24454 * 9 7 6 40 40 H 1.08996 * 109.47663 * 185.24459 * 9 7 6 41 41 H 1.09006 * 109.47102 * 305.24631 * 9 7 6 42 42 H 1.09002 * 109.47377 * 300.00473 * 10 7 6 43 43 H 1.09003 * 109.46901 * 60.00028 * 10 7 6 44 44 H 0.97003 * 119.99616 * 180.02562 * 14 13 11 45 45 H 1.09003 * 110.77737 * 23.76466 * 20 19 2 46 46 H 1.08996 * 110.78222 * 147.20239 * 20 19 2 47 47 H 1.08998 * 110.73506 * 216.13158 * 21 20 19 48 48 H 1.08997 * 110.89738 * 92.87686 * 21 20 19 49 49 H 1.08006 * 119.96096 * 359.28612 * 23 22 21 50 50 H 1.07999 * 120.05569 * 179.97438 * 24 23 22 51 51 H 1.07993 * 119.86913 * 180.14623 * 25 24 23 52 52 H 1.08003 * 119.89944 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 3.5062 -0.8004 -1.2045 6 6 4.0252 -1.5928 -2.3273 7 6 5.5375 -1.7658 -2.1737 8 6 6.2016 -0.3904 -2.0827 9 6 5.8332 -2.5600 -0.8998 10 6 6.0903 -2.5199 -3.3847 11 6 7.5799 -2.6908 -3.2329 12 1 8.0820 -2.3009 -2.3600 13 6 8.3015 -3.3458 -4.2083 14 7 7.6899 -3.8211 -5.2712 15 14 10.1478 -3.5583 -4.0199 16 1 10.4338 -4.3293 -2.7834 17 1 10.6844 -4.2902 -5.1953 18 1 10.7931 -2.2237 -3.9315 19 7 2.0196 -0.6923 1.1996 20 6 1.3781 -2.0170 1.3460 21 6 0.1907 -1.7149 2.2890 22 6 0.6648 -0.4900 3.0455 23 6 0.2182 0.0946 4.2122 24 6 0.8470 1.2226 4.7071 25 6 1.9251 1.7635 4.0305 26 6 2.3744 1.1839 2.8625 27 6 1.7434 0.0492 2.3549 28 1 -0.3634 0.4151 0.9400 29 1 -0.3634 0.6065 -0.8296 30 1 -0.3633 -1.0218 -0.1105 31 1 1.6228 -1.7277 -1.2835 32 1 1.7329 -0.1701 -2.1379 33 1 3.9179 0.1207 -1.1912 34 1 3.5462 -2.5719 -2.3331 35 1 3.8116 -1.0784 -3.2643 36 1 5.8077 0.1469 -1.2199 37 1 7.2790 -0.5136 -1.9728 38 1 5.9909 0.1754 -2.9903 39 1 5.4400 -3.5714 -1.0028 40 1 6.9105 -2.6035 -0.7405 41 1 5.3594 -2.0710 -0.0485 42 1 5.6173 -3.4998 -3.4495 43 1 5.8797 -1.9541 -4.2922 44 1 8.1976 -4.2823 -5.9572 45 1 1.0232 -2.3834 0.3827 46 1 2.0635 -2.7302 1.8036 47 1 0.0184 -2.5472 2.9713 48 1 -0.7112 -1.4916 1.7192 49 1 -0.6235 -0.3291 4.7399 50 1 0.4967 1.6802 5.6205 51 1 2.4173 2.6429 4.4185 52 1 3.2171 1.6109 2.3391 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174256550.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:59 Heat of formation + Delta-G solvation = 31.590136 kcal Electronic energy + Delta-G solvation = -27110.062173 eV Core-core repulsion = 23688.064060 eV Total energy + Delta-G solvation = -3421.998112 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.26358 -37.93250 -37.08933 -34.59887 -32.69506 -31.94285 -31.09243 -29.07518 -28.66770 -27.07536 -26.25100 -26.13012 -24.09004 -23.23522 -22.37726 -21.93651 -21.30218 -19.83544 -17.76035 -17.39413 -16.17078 -16.07965 -15.74610 -15.51381 -15.14809 -14.82922 -14.37415 -14.15763 -13.71138 -13.62683 -13.35745 -13.10693 -12.94668 -12.73467 -12.61259 -12.44674 -12.41201 -12.14625 -11.95072 -11.86946 -11.61642 -11.45357 -11.14903 -10.96708 -10.89908 -10.81245 -10.76297 -10.70867 -10.39034 -10.19827 -10.07827 -9.58707 -9.49930 -8.93523 -8.91612 -8.77567 -8.26730 -7.93089 -7.84082 -5.91661 -3.91248 1.18265 1.25255 3.37977 3.42180 3.44919 3.48717 3.66056 4.36467 4.41709 4.53973 4.65911 4.78320 4.83038 4.89977 4.94176 5.02920 5.17875 5.26287 5.28573 5.42514 5.43312 5.44149 5.50581 5.54764 5.65678 5.71467 5.75526 5.80186 5.83749 5.89681 5.99778 6.03032 6.10811 6.24727 6.33256 6.35157 6.37877 6.43557 6.61968 6.64108 6.79792 6.89816 6.93185 6.93654 7.25178 7.30253 7.35064 7.36470 7.53227 7.75057 7.81576 7.92925 8.09330 8.54658 9.14214 9.71196 11.20069 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.023192 B = 0.002596 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.032640 B =10781.171948 C =11213.203774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.090 3.910 3 H 0.081 0.919 4 C 0.066 3.934 5 N -0.668 5.668 6 C 0.071 3.929 7 C -0.054 4.054 8 C -0.127 4.127 9 C -0.115 4.115 10 C 0.033 3.967 11 C -0.504 4.504 12 H 0.058 0.942 13 C 0.054 3.946 14 N -0.899 5.899 15 Si 0.887 3.113 16 H -0.278 1.278 17 H -0.289 1.289 18 H -0.278 1.278 19 N -0.461 5.461 20 C 0.055 3.945 21 C -0.116 4.116 22 C -0.142 4.142 23 C -0.093 4.093 24 C -0.140 4.140 25 C -0.105 4.105 26 C -0.114 4.114 27 C 0.102 3.898 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.030 0.970 33 H 0.337 0.663 34 H 0.062 0.938 35 H 0.019 0.981 36 H 0.036 0.964 37 H 0.061 0.939 38 H 0.037 0.963 39 H 0.036 0.964 40 H 0.048 0.952 41 H 0.049 0.951 42 H 0.013 0.987 43 H 0.011 0.989 44 H 0.259 0.741 45 H 0.086 0.914 46 H 0.089 0.911 47 H 0.080 0.920 48 H 0.082 0.918 49 H 0.116 0.884 50 H 0.121 0.879 51 H 0.123 0.877 52 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.522 9.675 16.503 26.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.017 4.017 3 H 0.099 0.901 4 C -0.064 4.064 5 N -0.299 5.299 6 C -0.058 4.058 7 C -0.055 4.055 8 C -0.185 4.185 9 C -0.172 4.172 10 C -0.004 4.004 11 C -0.543 4.543 12 H 0.076 0.924 13 C -0.147 4.147 14 N -0.539 5.539 15 Si 0.716 3.284 16 H -0.203 1.203 17 H -0.215 1.215 18 H -0.204 1.204 19 N -0.176 5.176 20 C -0.072 4.072 21 C -0.154 4.154 22 C -0.145 4.145 23 C -0.111 4.111 24 C -0.159 4.159 25 C -0.124 4.124 26 C -0.134 4.134 27 C 0.006 3.994 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.048 0.952 33 H 0.155 0.845 34 H 0.081 0.919 35 H 0.037 0.963 36 H 0.055 0.945 37 H 0.080 0.920 38 H 0.056 0.944 39 H 0.055 0.945 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.032 0.968 43 H 0.029 0.971 44 H 0.068 0.932 45 H 0.104 0.896 46 H 0.107 0.893 47 H 0.098 0.902 48 H 0.101 0.899 49 H 0.134 0.866 50 H 0.139 0.861 51 H 0.141 0.859 52 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -17.905 8.958 16.618 26.019 hybrid contribution 0.122 0.462 -0.696 0.844 sum -17.783 9.420 15.922 25.661 Atomic orbital electron populations 1.22660 0.96918 1.02482 1.02498 1.21816 0.92334 0.98031 0.89501 0.90067 1.22008 0.90449 0.99853 0.94124 1.60380 1.03337 1.20158 1.46027 1.22081 0.96939 0.96850 0.89888 1.20566 0.91010 0.95711 0.98168 1.21741 1.01631 0.96306 0.98784 1.21579 1.00636 0.98461 0.96509 1.19137 0.95536 0.94610 0.91148 1.21216 0.92874 1.35166 1.05027 0.92376 1.25020 0.98097 0.96025 0.95520 1.69963 1.35610 1.38727 1.09625 0.86731 0.86149 0.78170 0.77378 1.20320 1.21495 1.20386 1.60132 1.55525 1.01985 1.00002 1.23102 0.93480 0.91089 0.99499 1.21930 0.99669 0.95594 0.98220 1.21046 0.96704 0.99097 0.97662 1.20370 0.99861 0.95941 0.94948 1.20991 0.97478 0.96886 1.00505 1.20914 0.96814 0.99749 0.94919 1.20543 1.00330 0.95749 0.96747 1.19660 0.92916 0.94049 0.92804 0.91940 0.92026 0.91857 0.91178 0.95212 0.84464 0.91940 0.96310 0.94479 0.91999 0.94409 0.94460 0.93254 0.93226 0.96838 0.97080 0.93186 0.89589 0.89314 0.90170 0.89928 0.86610 0.86137 0.85871 0.85804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.64 7.45 37.16 0.28 -1.36 16 2 C 0.09 0.94 2.54 -67.72 -0.17 0.77 16 3 H 0.08 0.88 8.07 -51.93 -0.42 0.46 16 4 C 0.07 0.77 5.01 -3.83 -0.02 0.75 16 5 N -0.67 -9.54 5.36 -113.79 -0.61 -10.15 16 6 C 0.07 1.23 4.64 -3.83 -0.02 1.21 16 7 C -0.05 -1.09 0.60 -154.51 -0.09 -1.19 16 8 C -0.13 -2.42 7.80 37.16 0.29 -2.13 16 9 C -0.11 -2.29 8.06 37.16 0.30 -1.99 16 10 C 0.03 0.85 4.04 -27.89 -0.11 0.73 16 11 C -0.50 -14.01 7.71 -34.44 -0.27 -14.28 16 12 H 0.06 1.58 5.69 -52.49 -0.30 1.28 16 13 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 14 N -0.90 -27.20 13.29 55.43 0.74 -26.46 16 15 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 17 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 N -0.46 -5.35 4.80 -161.49 -0.78 -6.12 16 20 C 0.06 0.57 6.28 -2.42 -0.02 0.56 16 21 C -0.12 -1.03 6.10 -26.61 -0.16 -1.19 16 22 C -0.14 -1.47 5.28 -104.04 -0.55 -2.02 16 23 C -0.09 -0.86 10.03 -39.67 -0.40 -1.26 16 24 C -0.14 -1.23 10.06 -39.53 -0.40 -1.62 16 25 C -0.11 -0.97 10.02 -39.68 -0.40 -1.37 16 26 C -0.11 -1.23 10.07 -39.27 -0.40 -1.63 16 27 C 0.10 1.17 5.01 -83.41 -0.42 0.76 16 28 H 0.06 0.58 6.04 -51.93 -0.31 0.27 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.52 5.82 -51.93 -0.30 0.22 16 31 H 0.07 0.83 6.57 -51.92 -0.34 0.49 16 32 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.34 4.74 6.98 -39.29 -0.27 4.47 16 34 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 35 H 0.02 0.33 8.14 -51.92 -0.42 -0.09 16 36 H 0.04 0.61 6.66 -51.93 -0.35 0.26 16 37 H 0.06 1.28 6.62 -51.93 -0.34 0.94 16 38 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.05 1.05 6.80 -51.93 -0.35 0.69 16 41 H 0.05 0.92 7.56 -51.93 -0.39 0.53 16 42 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 45 H 0.09 0.84 5.37 -51.93 -0.28 0.56 16 46 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 47 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 48 H 0.08 0.66 6.01 -51.93 -0.31 0.35 16 49 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 50 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 51 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 52 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 LS Contribution 390.56 15.07 5.89 5.89 Total: -1.00 -30.17 390.56 -11.45 -41.63 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -9.03 Total: 2.15 kcal Atomic # 6 Polarization: -21.17 SS G_CDS: -2.64 Total: -23.81 kcal Atomic # 7 Polarization: -42.08 SS G_CDS: -0.65 Total: -42.73 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -30.17 -11.45 -41.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174256550.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.219 kcal (2) G-P(sol) polarization free energy of solvation -30.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds