Wall clock time and date at job start Tue Mar 31 2020 11:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.46956 * 2 1 4 4 C 1.52992 * 109.47675 * 239.99680 * 2 1 3 5 5 N 1.46897 * 109.47564 * 183.76258 * 4 2 1 6 6 C 1.46897 * 111.00461 * 174.88275 * 5 4 2 7 7 C 1.52994 * 109.47623 * 185.39026 * 6 5 4 8 8 C 1.53002 * 109.47468 * 303.31416 * 7 6 5 9 9 C 1.53001 * 109.46908 * 63.31031 * 7 6 5 10 10 C 1.52997 * 109.47594 * 183.30933 * 7 6 5 11 11 C 1.50697 * 109.47167 * 180.02562 * 10 7 6 12 12 H 1.07994 * 120.00581 * 0.02562 * 11 10 7 13 13 C 1.37884 * 119.99915 * 179.97438 * 11 10 7 14 14 N 1.31519 * 119.99716 * 0.02562 * 13 11 10 15 15 Si 1.86793 * 120.00106 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47262 * 60.00117 * 15 13 11 17 17 H 1.48500 * 109.47502 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47153 * 300.00431 * 15 13 11 19 19 N 1.46901 * 109.47036 * 119.98979 * 2 1 3 20 20 C 1.47914 * 110.99764 * 51.06321 * 19 2 1 21 21 C 1.54602 * 102.61986 * 265.48608 * 20 19 2 22 22 C 1.51571 * 102.83589 * 334.46290 * 21 20 19 23 23 C 1.37922 * 131.56466 * 196.34699 * 22 21 20 24 24 C 1.38301 * 120.08088 * 179.28538 * 23 22 21 25 25 C 1.38303 * 119.88764 * 359.97438 * 24 23 22 26 26 C 1.37909 * 120.25996 * 0.11341 * 25 24 23 27 27 C 1.38967 * 107.95333 * 15.93850 * 22 21 20 28 28 H 1.08993 * 109.47697 * 293.82665 * 1 2 3 29 29 H 1.08997 * 109.47283 * 53.83128 * 1 2 3 30 30 H 1.09007 * 109.46891 * 173.82654 * 1 2 3 31 31 H 1.09009 * 109.47301 * 303.76243 * 4 2 1 32 32 H 1.08998 * 109.47461 * 63.75961 * 4 2 1 33 33 H 1.00902 * 111.00261 * 298.84058 * 5 4 2 34 34 H 1.08996 * 109.47430 * 305.39554 * 6 5 4 35 35 H 1.09010 * 109.46639 * 65.39274 * 6 5 4 36 36 H 1.09005 * 109.47112 * 59.99410 * 8 7 6 37 37 H 1.08997 * 109.47552 * 179.97438 * 8 7 6 38 38 H 1.09003 * 109.46687 * 299.99764 * 8 7 6 39 39 H 1.09001 * 109.47193 * 65.24454 * 9 7 6 40 40 H 1.08996 * 109.47663 * 185.24459 * 9 7 6 41 41 H 1.09006 * 109.47102 * 305.24631 * 9 7 6 42 42 H 1.09002 * 109.47377 * 300.00473 * 10 7 6 43 43 H 1.09003 * 109.46901 * 60.00028 * 10 7 6 44 44 H 0.97003 * 119.99616 * 180.02562 * 14 13 11 45 45 H 1.09003 * 110.77737 * 23.76466 * 20 19 2 46 46 H 1.08996 * 110.78222 * 147.20239 * 20 19 2 47 47 H 1.08998 * 110.73506 * 216.13158 * 21 20 19 48 48 H 1.08997 * 110.89738 * 92.87686 * 21 20 19 49 49 H 1.08006 * 119.96096 * 359.28612 * 23 22 21 50 50 H 1.07999 * 120.05569 * 179.97438 * 24 23 22 51 51 H 1.07993 * 119.86913 * 180.14623 * 25 24 23 52 52 H 1.08003 * 119.89944 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 3.5062 -0.8004 -1.2045 6 6 4.0252 -1.5928 -2.3273 7 6 5.5375 -1.7658 -2.1737 8 6 6.2016 -0.3904 -2.0827 9 6 5.8332 -2.5600 -0.8998 10 6 6.0903 -2.5199 -3.3847 11 6 7.5799 -2.6908 -3.2329 12 1 8.0820 -2.3009 -2.3600 13 6 8.3015 -3.3458 -4.2083 14 7 7.6899 -3.8211 -5.2712 15 14 10.1478 -3.5583 -4.0199 16 1 10.4338 -4.3293 -2.7834 17 1 10.6844 -4.2902 -5.1953 18 1 10.7931 -2.2237 -3.9315 19 7 2.0196 -0.6923 1.1996 20 6 1.3781 -2.0170 1.3460 21 6 0.1907 -1.7149 2.2890 22 6 0.6648 -0.4900 3.0455 23 6 0.2182 0.0946 4.2122 24 6 0.8470 1.2226 4.7071 25 6 1.9251 1.7635 4.0305 26 6 2.3744 1.1839 2.8625 27 6 1.7434 0.0492 2.3549 28 1 -0.3634 0.4151 0.9400 29 1 -0.3634 0.6065 -0.8296 30 1 -0.3633 -1.0218 -0.1105 31 1 1.6228 -1.7277 -1.2835 32 1 1.7329 -0.1701 -2.1379 33 1 3.9179 0.1207 -1.1912 34 1 3.5462 -2.5719 -2.3331 35 1 3.8116 -1.0784 -3.2643 36 1 5.8077 0.1469 -1.2199 37 1 7.2790 -0.5136 -1.9728 38 1 5.9909 0.1754 -2.9903 39 1 5.4400 -3.5714 -1.0028 40 1 6.9105 -2.6035 -0.7405 41 1 5.3594 -2.0710 -0.0485 42 1 5.6173 -3.4998 -3.4495 43 1 5.8797 -1.9541 -4.2922 44 1 8.1976 -4.2823 -5.9572 45 1 1.0232 -2.3834 0.3827 46 1 2.0635 -2.7302 1.8036 47 1 0.0184 -2.5472 2.9713 48 1 -0.7112 -1.4916 1.7192 49 1 -0.6235 -0.3291 4.7399 50 1 0.4967 1.6802 5.6205 51 1 2.4173 2.6429 4.4185 52 1 3.2171 1.6109 2.3391 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174256550.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:58 Heat of formation + Delta-G solvation = 15.395902 kcal Electronic energy + Delta-G solvation = -27110.764408 eV Core-core repulsion = 23688.064060 eV Total energy + Delta-G solvation = -3422.700347 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.01922 -39.21185 -38.14106 -35.84582 -34.40286 -33.11213 -32.01475 -29.80191 -29.39253 -29.03088 -27.85810 -27.46058 -25.65147 -24.01794 -23.72192 -23.03584 -22.01278 -20.68430 -19.38357 -18.31916 -18.21154 -16.85358 -16.65185 -16.57470 -16.25039 -16.11285 -15.77938 -15.35966 -14.92661 -14.73738 -14.40879 -14.31017 -14.16084 -13.87013 -13.71780 -13.55640 -13.33022 -13.22748 -13.15936 -13.03993 -12.83569 -12.72814 -12.65253 -12.41187 -12.21535 -12.19807 -12.10357 -11.91878 -11.83952 -11.71734 -11.58968 -11.32726 -10.82425 -10.70858 -10.48817 -10.23583 -9.64460 -9.09871 -8.64569 -8.12998 -6.19693 0.46773 0.53031 1.40670 1.43059 1.50347 2.44389 2.73877 2.91771 3.20595 3.33320 3.66627 3.92482 3.95351 4.06588 4.18421 4.20483 4.23304 4.27038 4.32607 4.43373 4.45329 4.54048 4.59462 4.61761 4.70733 4.72486 4.80571 4.84685 4.85628 4.91438 4.95083 5.02491 5.06712 5.09229 5.12315 5.22155 5.26129 5.27917 5.29581 5.54245 5.55177 5.56417 5.60712 5.62647 5.67762 5.71450 5.91085 5.94631 5.95047 6.09889 6.24599 6.40895 6.49321 6.64759 6.95301 7.47320 8.99142 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.023192 B = 0.002596 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.032640 B =10781.171948 C =11213.203774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.096 3.904 3 H 0.077 0.923 4 C 0.068 3.932 5 N -0.666 5.666 6 C 0.086 3.914 7 C -0.050 4.050 8 C -0.119 4.119 9 C -0.102 4.102 10 C 0.040 3.960 11 C -0.514 4.514 12 H 0.063 0.937 13 C -0.005 4.005 14 N -0.938 5.938 15 Si 0.955 3.045 16 H -0.269 1.269 17 H -0.287 1.287 18 H -0.268 1.268 19 N -0.478 5.478 20 C 0.052 3.948 21 C -0.108 4.108 22 C -0.153 4.153 23 C -0.100 4.100 24 C -0.141 4.141 25 C -0.109 4.109 26 C -0.132 4.132 27 C 0.081 3.919 28 H 0.058 0.942 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.038 0.962 33 H 0.340 0.660 34 H 0.055 0.945 35 H 0.013 0.987 36 H 0.066 0.934 37 H 0.042 0.958 38 H 0.035 0.965 39 H 0.025 0.975 40 H 0.033 0.967 41 H 0.067 0.933 42 H -0.017 1.017 43 H -0.017 1.017 44 H 0.259 0.741 45 H 0.090 0.910 46 H 0.074 0.926 47 H 0.089 0.911 48 H 0.093 0.907 49 H 0.135 0.865 50 H 0.145 0.855 51 H 0.143 0.857 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.286 10.783 18.437 28.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.010 4.010 3 H 0.095 0.905 4 C -0.062 4.062 5 N -0.297 5.297 6 C -0.044 4.044 7 C -0.051 4.051 8 C -0.176 4.176 9 C -0.159 4.159 10 C 0.002 3.998 11 C -0.552 4.552 12 H 0.082 0.918 13 C -0.201 4.201 14 N -0.579 5.579 15 Si 0.780 3.220 16 H -0.194 1.194 17 H -0.213 1.213 18 H -0.193 1.193 19 N -0.193 5.193 20 C -0.074 4.074 21 C -0.145 4.145 22 C -0.156 4.156 23 C -0.118 4.118 24 C -0.159 4.159 25 C -0.128 4.128 26 C -0.152 4.152 27 C -0.015 4.015 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.056 0.944 33 H 0.159 0.841 34 H 0.073 0.927 35 H 0.031 0.969 36 H 0.085 0.915 37 H 0.061 0.939 38 H 0.054 0.946 39 H 0.045 0.955 40 H 0.052 0.948 41 H 0.086 0.914 42 H 0.001 0.999 43 H 0.002 0.998 44 H 0.068 0.932 45 H 0.108 0.892 46 H 0.093 0.907 47 H 0.108 0.892 48 H 0.111 0.889 49 H 0.152 0.848 50 H 0.163 0.837 51 H 0.160 0.840 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -18.677 10.081 18.573 28.203 hybrid contribution 0.315 0.141 -1.260 1.307 sum -18.362 10.222 17.312 27.228 Atomic orbital electron populations 1.22562 0.95423 1.03061 1.02627 1.21719 0.93412 0.97346 0.88543 0.90519 1.22052 0.88524 1.00282 0.95294 1.60309 1.05129 1.20068 1.44188 1.21761 0.94734 0.97100 0.90795 1.20430 0.93124 0.95785 0.95734 1.21639 1.00293 0.95627 1.00046 1.21449 0.99578 0.98008 0.96880 1.19022 0.94903 0.93328 0.92508 1.21589 0.94036 1.34565 1.04981 0.91847 1.25917 1.03096 0.95865 0.95247 1.70105 1.37508 1.39760 1.10562 0.85647 0.80261 0.78523 0.77521 1.19424 1.21252 1.19303 1.60111 1.56314 1.02475 1.00447 1.23083 0.93834 0.90507 1.00008 1.21877 0.99255 0.95432 0.97984 1.21262 0.96648 0.99526 0.98120 1.20682 1.00375 0.96073 0.94690 1.21335 0.96924 0.96556 1.01095 1.21190 0.96987 1.00235 0.94361 1.20707 1.00674 0.96170 0.97648 1.19814 0.93865 0.94689 0.93139 0.92301 0.91166 0.91194 0.91194 0.94377 0.84084 0.92689 0.96882 0.91488 0.93890 0.94577 0.95535 0.94800 0.91386 0.99864 0.99837 0.93181 0.89178 0.90716 0.89245 0.88852 0.84758 0.83733 0.83958 0.86217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.80 7.45 71.98 0.54 -2.26 16 2 C 0.10 1.89 2.54 44.91 0.11 2.00 16 3 H 0.08 1.57 8.07 -2.38 -0.02 1.55 16 4 C 0.07 1.51 5.01 86.30 0.43 1.94 16 5 N -0.67 -18.28 5.36 -513.91 -2.76 -21.03 16 6 C 0.09 2.94 4.64 86.30 0.40 3.34 16 7 C -0.05 -2.05 0.60 -52.18 -0.03 -2.08 16 8 C -0.12 -4.43 7.80 71.98 0.56 -3.87 16 9 C -0.10 -4.05 8.06 71.98 0.58 -3.48 16 10 C 0.04 2.11 4.04 29.85 0.12 2.23 16 11 C -0.51 -29.02 7.71 25.60 0.20 -28.83 16 12 H 0.06 3.46 5.69 -2.91 -0.02 3.44 16 13 C 0.00 -0.27 5.46 84.66 0.46 0.19 16 14 N -0.94 -58.09 13.29 21.45 0.28 -57.80 16 15 Si 0.96 45.21 29.54 68.60 2.03 47.23 16 16 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 17 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 18 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 19 N -0.48 -10.61 4.80 -664.84 -3.19 -13.80 16 20 C 0.05 1.04 6.28 86.65 0.54 1.58 16 21 C -0.11 -1.73 6.10 30.67 0.19 -1.55 16 22 C -0.15 -2.92 5.28 -19.49 -0.10 -3.02 16 23 C -0.10 -1.64 10.03 22.21 0.22 -1.41 16 24 C -0.14 -2.13 10.06 22.30 0.22 -1.90 16 25 C -0.11 -1.82 10.02 22.21 0.22 -1.60 16 26 C -0.13 -2.74 10.07 22.47 0.23 -2.51 16 27 C 0.08 1.78 5.01 38.29 0.19 1.97 16 28 H 0.06 0.99 6.04 -2.39 -0.01 0.98 16 29 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.07 1.00 5.82 -2.38 -0.01 0.99 16 31 H 0.07 1.57 6.57 -2.38 -0.02 1.56 16 32 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.34 9.03 6.98 -89.69 -0.63 8.40 16 34 H 0.05 1.97 8.08 -2.39 -0.02 1.95 16 35 H 0.01 0.46 8.14 -2.38 -0.02 0.44 16 36 H 0.07 2.09 6.66 -2.38 -0.02 2.07 16 37 H 0.04 1.75 6.62 -2.39 -0.02 1.74 16 38 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.03 1.42 6.80 -2.39 -0.02 1.41 16 41 H 0.07 2.45 7.56 -2.38 -0.02 2.43 16 42 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 43 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 44 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 45 H 0.09 1.66 5.37 -2.39 -0.01 1.64 16 46 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 47 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 48 H 0.09 1.29 6.01 -2.39 -0.01 1.28 16 49 H 0.13 1.63 8.06 -2.91 -0.02 1.60 16 50 H 0.14 1.42 8.06 -2.91 -0.02 1.40 16 51 H 0.14 1.71 8.06 -2.91 -0.02 1.68 16 52 H 0.12 2.45 8.06 -2.91 -0.02 2.43 16 Total: -1.00 -65.66 390.56 1.72 -63.94 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: 0.26 Total: 20.71 kcal Atomic # 6 Polarization: -44.34 SS G_CDS: 5.09 Total: -39.25 kcal Atomic # 7 Polarization: -86.97 SS G_CDS: -5.66 Total: -92.64 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.23 kcal Total: -65.66 1.72 -63.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174256550.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.337 kcal (2) G-P(sol) polarization free energy of solvation -65.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds