Wall clock time and date at job start Tue Mar 31 2020 11:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47318 * 2 1 4 4 C 1.53005 * 109.47060 * 240.00178 * 2 1 3 5 5 C 1.50699 * 109.46995 * 60.00146 * 4 2 1 6 6 H 1.07995 * 120.00329 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99645 * 179.97438 * 5 4 2 8 8 N 1.31517 * 119.99942 * 179.97438 * 7 5 4 9 9 Si 1.86794 * 120.00147 * 0.02562 * 7 5 4 10 10 H 1.48506 * 109.47011 * 90.00029 * 9 7 5 11 11 H 1.48503 * 109.47282 * 209.99548 * 9 7 5 12 12 H 1.48498 * 109.47337 * 330.00007 * 9 7 5 13 13 C 1.53005 * 109.47151 * 120.00486 * 2 1 3 14 14 N 1.46896 * 109.46539 * 299.99722 * 13 2 1 15 15 C 1.46910 * 111.00007 * 179.97438 * 14 13 2 16 16 C 1.53116 * 109.52362 * 154.99748 * 15 14 13 17 17 C 1.53035 * 109.27620 * 177.56337 * 16 15 14 18 18 N 1.46855 * 109.52301 * 300.82119 * 17 16 15 19 19 C 1.39676 * 110.99902 * 185.83835 * 18 17 16 20 20 C 1.38906 * 120.07135 * 179.97438 * 19 18 17 21 21 C 1.38111 * 119.92343 * 180.02562 * 20 19 18 22 22 C 1.38288 * 120.07382 * 0.28047 * 21 20 19 23 23 C 1.38286 * 120.14755 * 359.44532 * 22 21 20 24 24 C 1.38112 * 120.07587 * 0.55318 * 23 22 21 25 25 C 1.46849 * 111.19593 * 61.74571 * 18 17 16 26 26 C 1.53041 * 109.52056 * 298.25550 * 25 18 17 27 27 H 1.09004 * 109.47086 * 300.00027 * 1 2 3 28 28 H 1.09000 * 109.46903 * 59.99761 * 1 2 3 29 29 H 1.09001 * 109.47531 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46844 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47329 * 299.99978 * 3 2 1 32 32 H 1.08995 * 109.47000 * 60.00219 * 3 2 1 33 33 H 1.09005 * 109.47061 * 180.02562 * 4 2 1 34 34 H 1.08999 * 109.46985 * 300.00028 * 4 2 1 35 35 H 0.96995 * 120.00546 * 179.97438 * 8 7 5 36 36 H 1.08998 * 109.46915 * 180.02562 * 13 2 1 37 37 H 1.09001 * 109.46887 * 59.99626 * 13 2 1 38 38 H 1.00896 * 111.00538 * 303.95296 * 14 13 2 39 39 H 1.09001 * 109.51397 * 34.87261 * 15 14 13 40 40 H 1.09005 * 109.50279 * 57.62392 * 16 15 14 41 41 H 1.09001 * 109.54124 * 297.52287 * 16 15 14 42 42 H 1.09008 * 109.46354 * 180.80902 * 17 16 15 43 43 H 1.08993 * 109.45683 * 60.83204 * 17 16 15 44 44 H 1.07999 * 120.03932 * 0.04675 * 20 19 18 45 45 H 1.08002 * 119.96028 * 179.97438 * 21 20 19 46 46 H 1.08001 * 119.92357 * 179.69823 * 22 21 20 47 47 H 1.08002 * 119.96005 * 180.25011 * 23 22 21 48 48 H 1.07998 * 120.03717 * 179.70130 * 24 23 22 49 49 H 1.08995 * 109.46185 * 58.27117 * 25 18 17 50 50 H 1.08997 * 109.45953 * 178.24444 * 25 18 17 51 51 H 1.09000 * 109.50381 * 299.23776 * 26 25 18 52 52 H 1.09001 * 109.50327 * 179.12024 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9171 0.8676 -2.3806 7 6 1.8712 -0.4815 -3.7320 8 7 1.4324 0.1382 -4.8058 9 14 2.9450 -2.0003 -3.9034 10 1 2.0864 -3.2110 -3.9495 11 1 3.7374 -1.9075 -5.1559 12 1 3.8650 -2.0898 -2.7412 13 6 2.0400 -0.7214 1.2492 14 7 1.5503 -0.0289 2.4486 15 6 2.0208 -0.6954 3.6703 16 6 2.0551 0.3126 4.8224 17 6 2.4874 -0.4009 6.1053 18 7 1.5426 -1.4840 6.4067 19 6 1.8318 -2.0716 7.6404 20 6 1.0516 -3.1196 8.1122 21 6 1.3400 -3.6980 9.3327 22 6 2.4004 -3.2311 10.0876 23 6 3.1825 -2.1917 9.6183 24 6 2.8997 -1.6088 8.3986 25 6 1.5276 -2.4888 5.3359 26 6 1.0666 -1.8375 4.0300 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1301 1.4424 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1300 -0.7216 -1.2491 34 1 1.6766 -1.7489 -1.2493 35 1 1.6673 -0.1927 -5.6868 36 1 3.1300 -0.7210 1.2494 37 1 1.6766 -1.7490 1.2491 38 1 1.8197 0.9434 2.4402 39 1 3.0218 -1.0941 3.5052 40 1 1.0622 0.7408 4.9610 41 1 2.7648 1.1069 4.5909 42 1 2.4990 0.3111 6.9307 43 1 3.4857 -0.8169 5.9705 44 1 0.2207 -3.4819 7.5251 45 1 0.7335 -4.5126 9.7003 46 1 2.6207 -3.6820 11.0439 47 1 4.0125 -1.8322 10.2085 48 1 3.5080 -0.7939 8.0349 49 1 2.5305 -2.8949 5.2050 50 1 0.8420 -3.2932 5.6024 51 1 0.0582 -1.4433 4.1561 52 1 1.0705 -2.5800 3.2319 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174298519.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:09 Heat of formation + Delta-G solvation = 19.296473 kcal Electronic energy + Delta-G solvation = -26499.509949 eV Core-core repulsion = 23076.978744 eV Total energy + Delta-G solvation = -3422.531206 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.65228 -38.59391 -37.33744 -35.00699 -32.48827 -31.89898 -31.31890 -30.64452 -28.74728 -27.52158 -26.38004 -25.52647 -24.16193 -23.62385 -22.09451 -21.77331 -21.19490 -19.90178 -18.02323 -17.79671 -16.78914 -16.09684 -15.83841 -15.60276 -15.10237 -14.89971 -14.54419 -14.25502 -14.07588 -13.97883 -13.77750 -13.63739 -13.15027 -13.03085 -12.91477 -12.62317 -12.29134 -12.21742 -12.05620 -11.74333 -11.48313 -11.43925 -11.30788 -11.14096 -11.00266 -10.86130 -10.75753 -10.50062 -10.49323 -10.30334 -9.96088 -9.78203 -9.68112 -9.27109 -9.22831 -8.89355 -8.49521 -8.17452 -8.08992 -5.99714 -3.95780 1.09941 1.11894 3.31446 3.31928 3.39565 3.42735 3.61847 4.20246 4.46187 4.48259 4.55433 4.66865 4.70376 4.84308 4.92489 5.01152 5.05578 5.13644 5.23072 5.29464 5.33028 5.33214 5.44655 5.47460 5.49288 5.59020 5.62718 5.68191 5.78241 5.85971 5.88429 6.00611 6.03929 6.12870 6.16300 6.24295 6.27294 6.27967 6.43151 6.50677 6.60378 6.70362 6.75071 6.80682 7.04158 7.08451 7.14342 7.20725 7.31542 7.33718 7.46622 7.63662 7.85850 8.60234 9.06331 9.63373 11.13368 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.028558 B = 0.002232 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.214765 B =12539.807242 C =12884.155604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.049 4.049 3 C -0.130 4.130 4 C -0.004 4.004 5 C -0.506 4.506 6 H 0.078 0.922 7 C 0.064 3.936 8 N -0.905 5.905 9 Si 0.876 3.124 10 H -0.278 1.278 11 H -0.290 1.290 12 H -0.268 1.268 13 C 0.069 3.931 14 N -0.680 5.680 15 C 0.085 3.915 16 C -0.120 4.120 17 C 0.056 3.944 18 N -0.487 5.487 19 C 0.117 3.883 20 C -0.143 4.143 21 C -0.095 4.095 22 C -0.153 4.153 23 C -0.094 4.094 24 C -0.175 4.175 25 C 0.060 3.940 26 C -0.106 4.106 27 H 0.045 0.955 28 H 0.059 0.941 29 H 0.038 0.962 30 H 0.039 0.961 31 H 0.069 0.931 32 H 0.036 0.964 33 H 0.011 0.989 34 H 0.010 0.990 35 H 0.261 0.739 36 H 0.021 0.979 37 H 0.065 0.935 38 H 0.341 0.659 39 H 0.037 0.963 40 H 0.083 0.917 41 H 0.069 0.931 42 H 0.083 0.917 43 H 0.044 0.956 44 H 0.125 0.875 45 H 0.122 0.878 46 H 0.119 0.881 47 H 0.120 0.880 48 H 0.126 0.874 49 H 0.041 0.959 50 H 0.082 0.918 51 H 0.081 0.919 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.711 -4.605 29.013 29.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.049 4.049 3 C -0.188 4.188 4 C -0.042 4.042 5 C -0.544 4.544 6 H 0.096 0.904 7 C -0.137 4.137 8 N -0.545 5.545 9 Si 0.704 3.296 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.192 1.192 13 C -0.060 4.060 14 N -0.312 5.312 15 C -0.025 4.025 16 C -0.158 4.158 17 C -0.072 4.072 18 N -0.202 5.202 19 C 0.019 3.981 20 C -0.163 4.163 21 C -0.114 4.114 22 C -0.172 4.172 23 C -0.113 4.113 24 C -0.196 4.196 25 C -0.065 4.065 26 C -0.144 4.144 27 H 0.064 0.936 28 H 0.078 0.922 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.088 0.912 32 H 0.054 0.946 33 H 0.030 0.970 34 H 0.028 0.972 35 H 0.071 0.929 36 H 0.039 0.961 37 H 0.083 0.917 38 H 0.161 0.839 39 H 0.055 0.945 40 H 0.101 0.899 41 H 0.088 0.912 42 H 0.101 0.899 43 H 0.062 0.938 44 H 0.143 0.857 45 H 0.140 0.860 46 H 0.137 0.863 47 H 0.138 0.862 48 H 0.144 0.856 49 H 0.059 0.941 50 H 0.101 0.899 51 H 0.100 0.900 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.630 -4.690 28.726 29.152 hybrid contribution 2.268 -0.897 -0.298 2.457 sum 3.898 -5.587 28.428 29.232 Atomic orbital electron populations 1.21611 0.94495 1.00641 1.00722 1.20417 0.96223 0.95020 0.93243 1.21779 0.99530 0.96500 1.00973 1.19629 0.95749 0.95450 0.93383 1.21136 1.31395 1.13212 0.88673 0.90412 1.25028 0.95846 0.96753 0.96057 1.69908 1.46125 1.40656 0.97810 0.86844 0.81279 0.84076 0.77425 1.20445 1.21589 1.19240 1.22173 0.96044 0.98161 0.89641 1.60540 1.63702 1.06255 1.00716 1.21539 0.96124 0.94698 0.90143 1.21806 1.03158 0.97674 0.93164 1.22235 0.93238 0.93244 0.98454 1.59009 1.48804 1.11326 1.01066 1.19029 0.93217 0.93938 0.91925 1.20829 1.00485 0.97650 0.97343 1.21025 0.97112 0.99169 0.94092 1.21059 0.97105 0.98585 1.00405 1.21007 0.98987 0.95844 0.95452 1.21337 0.97687 1.03345 0.97219 1.22278 1.00676 0.93189 0.90393 1.21620 1.00709 0.97440 0.94642 0.93603 0.92183 0.94270 0.94219 0.91155 0.94551 0.97033 0.97210 0.92904 0.96058 0.91665 0.83948 0.94462 0.89878 0.91219 0.89901 0.93771 0.85730 0.85993 0.86345 0.86211 0.85646 0.94081 0.89944 0.90040 0.91002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.23 8.06 37.16 0.30 -1.93 16 2 C -0.05 -0.92 0.60 -154.50 -0.09 -1.02 16 3 C -0.13 -2.36 7.89 37.16 0.29 -2.07 16 4 C 0.00 -0.10 3.11 -27.88 -0.09 -0.19 16 5 C -0.51 -13.94 8.20 -34.44 -0.28 -14.22 16 6 H 0.08 2.29 5.92 -52.49 -0.31 1.97 16 7 C 0.06 1.84 5.47 -17.82 -0.10 1.74 16 8 N -0.91 -27.75 13.96 55.43 0.77 -26.97 16 9 Si 0.88 21.79 27.47 -169.99 -4.67 17.12 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 13 C 0.07 1.10 4.45 -3.82 -0.02 1.08 16 14 N -0.68 -9.06 5.52 -106.59 -0.59 -9.65 16 15 C 0.09 0.96 2.56 -67.59 -0.17 0.79 16 16 C -0.12 -1.14 5.36 -26.65 -0.14 -1.28 16 17 C 0.06 0.49 4.15 -3.83 -0.02 0.48 16 18 N -0.49 -4.83 4.70 -171.15 -0.80 -5.63 16 19 C 0.12 1.15 5.64 -83.79 -0.47 0.68 16 20 C -0.14 -1.31 9.16 -39.38 -0.36 -1.67 16 21 C -0.10 -0.76 10.04 -39.61 -0.40 -1.16 16 22 C -0.15 -1.18 10.04 -39.55 -0.40 -1.58 16 23 C -0.09 -0.75 10.04 -39.61 -0.40 -1.15 16 24 C -0.18 -1.56 8.82 -39.38 -0.35 -1.91 16 25 C 0.06 0.58 5.26 -3.83 -0.02 0.56 16 26 C -0.11 -1.15 5.59 -26.65 -0.15 -1.30 16 27 H 0.04 0.78 7.60 -51.93 -0.39 0.39 16 28 H 0.06 1.28 6.62 -51.93 -0.34 0.93 16 29 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 1.45 6.62 -51.93 -0.34 1.11 16 32 H 0.04 0.55 6.57 -51.93 -0.34 0.21 16 33 H 0.01 0.27 7.20 -51.93 -0.37 -0.10 16 34 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 35 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 36 H 0.02 0.34 8.06 -51.93 -0.42 -0.07 16 37 H 0.06 1.06 7.51 -51.93 -0.39 0.67 16 38 H 0.34 4.38 6.40 -39.29 -0.25 4.13 16 39 H 0.04 0.45 7.80 -51.93 -0.41 0.04 16 40 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.08 0.67 6.98 -51.92 -0.36 0.31 16 43 H 0.04 0.39 7.74 -51.93 -0.40 -0.01 16 44 H 0.12 1.04 7.15 -52.49 -0.38 0.66 16 45 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 46 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 47 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 48 H 0.13 0.97 5.81 -52.49 -0.30 0.67 16 49 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 50 H 0.08 0.73 6.70 -51.93 -0.35 0.39 16 51 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 52 H 0.07 0.83 7.54 -51.93 -0.39 0.43 16 LS Contribution 387.98 15.07 5.85 5.85 Total: -1.00 -29.96 387.98 -11.42 -41.38 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -9.12 Total: 2.07 kcal Atomic # 6 Polarization: -21.30 SS G_CDS: -2.86 Total: -24.16 kcal Atomic # 7 Polarization: -41.64 SS G_CDS: -0.62 Total: -42.26 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.67 Total: 17.12 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -29.96 -11.42 -41.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174298519.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.674 kcal (2) G-P(sol) polarization free energy of solvation -29.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds