Wall clock time and date at job start Tue Mar 31 2020 11:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47318 * 2 1 4 4 C 1.53005 * 109.47060 * 240.00178 * 2 1 3 5 5 C 1.50699 * 109.46995 * 60.00146 * 4 2 1 6 6 H 1.07995 * 120.00329 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99645 * 179.97438 * 5 4 2 8 8 N 1.31517 * 119.99942 * 179.97438 * 7 5 4 9 9 Si 1.86794 * 120.00147 * 0.02562 * 7 5 4 10 10 H 1.48506 * 109.47011 * 90.00029 * 9 7 5 11 11 H 1.48503 * 109.47282 * 209.99548 * 9 7 5 12 12 H 1.48498 * 109.47337 * 330.00007 * 9 7 5 13 13 C 1.53005 * 109.47151 * 120.00486 * 2 1 3 14 14 N 1.46896 * 109.46539 * 299.99722 * 13 2 1 15 15 C 1.46910 * 111.00007 * 179.97438 * 14 13 2 16 16 C 1.53116 * 109.52362 * 154.99748 * 15 14 13 17 17 C 1.53035 * 109.27620 * 177.56337 * 16 15 14 18 18 N 1.46855 * 109.52301 * 300.82119 * 17 16 15 19 19 C 1.39676 * 110.99902 * 185.83835 * 18 17 16 20 20 C 1.38906 * 120.07135 * 179.97438 * 19 18 17 21 21 C 1.38111 * 119.92343 * 180.02562 * 20 19 18 22 22 C 1.38288 * 120.07382 * 0.28047 * 21 20 19 23 23 C 1.38286 * 120.14755 * 359.44532 * 22 21 20 24 24 C 1.38112 * 120.07587 * 0.55318 * 23 22 21 25 25 C 1.46849 * 111.19593 * 61.74571 * 18 17 16 26 26 C 1.53041 * 109.52056 * 298.25550 * 25 18 17 27 27 H 1.09004 * 109.47086 * 300.00027 * 1 2 3 28 28 H 1.09000 * 109.46903 * 59.99761 * 1 2 3 29 29 H 1.09001 * 109.47531 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46844 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47329 * 299.99978 * 3 2 1 32 32 H 1.08995 * 109.47000 * 60.00219 * 3 2 1 33 33 H 1.09005 * 109.47061 * 180.02562 * 4 2 1 34 34 H 1.08999 * 109.46985 * 300.00028 * 4 2 1 35 35 H 0.96995 * 120.00546 * 179.97438 * 8 7 5 36 36 H 1.08998 * 109.46915 * 180.02562 * 13 2 1 37 37 H 1.09001 * 109.46887 * 59.99626 * 13 2 1 38 38 H 1.00896 * 111.00538 * 303.95296 * 14 13 2 39 39 H 1.09001 * 109.51397 * 34.87261 * 15 14 13 40 40 H 1.09005 * 109.50279 * 57.62392 * 16 15 14 41 41 H 1.09001 * 109.54124 * 297.52287 * 16 15 14 42 42 H 1.09008 * 109.46354 * 180.80902 * 17 16 15 43 43 H 1.08993 * 109.45683 * 60.83204 * 17 16 15 44 44 H 1.07999 * 120.03932 * 0.04675 * 20 19 18 45 45 H 1.08002 * 119.96028 * 179.97438 * 21 20 19 46 46 H 1.08001 * 119.92357 * 179.69823 * 22 21 20 47 47 H 1.08002 * 119.96005 * 180.25011 * 23 22 21 48 48 H 1.07998 * 120.03717 * 179.70130 * 24 23 22 49 49 H 1.08995 * 109.46185 * 58.27117 * 25 18 17 50 50 H 1.08997 * 109.45953 * 178.24444 * 25 18 17 51 51 H 1.09000 * 109.50381 * 299.23776 * 26 25 18 52 52 H 1.09001 * 109.50327 * 179.12024 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9171 0.8676 -2.3806 7 6 1.8712 -0.4815 -3.7320 8 7 1.4324 0.1382 -4.8058 9 14 2.9450 -2.0003 -3.9034 10 1 2.0864 -3.2110 -3.9495 11 1 3.7374 -1.9075 -5.1559 12 1 3.8650 -2.0898 -2.7412 13 6 2.0400 -0.7214 1.2492 14 7 1.5503 -0.0289 2.4486 15 6 2.0208 -0.6954 3.6703 16 6 2.0551 0.3126 4.8224 17 6 2.4874 -0.4009 6.1053 18 7 1.5426 -1.4840 6.4067 19 6 1.8318 -2.0716 7.6404 20 6 1.0516 -3.1196 8.1122 21 6 1.3400 -3.6980 9.3327 22 6 2.4004 -3.2311 10.0876 23 6 3.1825 -2.1917 9.6183 24 6 2.8997 -1.6088 8.3986 25 6 1.5276 -2.4888 5.3359 26 6 1.0666 -1.8375 4.0300 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1301 1.4424 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1300 -0.7216 -1.2491 34 1 1.6766 -1.7489 -1.2493 35 1 1.6673 -0.1927 -5.6868 36 1 3.1300 -0.7210 1.2494 37 1 1.6766 -1.7490 1.2491 38 1 1.8197 0.9434 2.4402 39 1 3.0218 -1.0941 3.5052 40 1 1.0622 0.7408 4.9610 41 1 2.7648 1.1069 4.5909 42 1 2.4990 0.3111 6.9307 43 1 3.4857 -0.8169 5.9705 44 1 0.2207 -3.4819 7.5251 45 1 0.7335 -4.5126 9.7003 46 1 2.6207 -3.6820 11.0439 47 1 4.0125 -1.8322 10.2085 48 1 3.5080 -0.7939 8.0349 49 1 2.5305 -2.8949 5.2050 50 1 0.8420 -3.2932 5.6024 51 1 0.0582 -1.4433 4.1561 52 1 1.0705 -2.5800 3.2319 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174298519.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:08 Heat of formation + Delta-G solvation = 2.780940 kcal Electronic energy + Delta-G solvation = -26500.226117 eV Core-core repulsion = 23076.978744 eV Total energy + Delta-G solvation = -3423.247373 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.34681 -39.58833 -38.48100 -36.10418 -34.43510 -32.58030 -32.44398 -31.31691 -29.85892 -29.08759 -27.91590 -26.78069 -24.98365 -24.70370 -23.51179 -22.51094 -22.02736 -20.72770 -19.39684 -18.86926 -18.63157 -16.83888 -16.73477 -16.46053 -16.29127 -15.95767 -15.67778 -15.40172 -15.23512 -15.08569 -14.86702 -14.49991 -14.38150 -14.14154 -14.04751 -13.94484 -13.62230 -13.45116 -12.99178 -12.86442 -12.80714 -12.56559 -12.38607 -12.25317 -12.22938 -12.16574 -12.09142 -11.94840 -11.76203 -11.61755 -11.35500 -11.30013 -10.93579 -10.77698 -10.70320 -10.61689 -9.83444 -9.26559 -8.75490 -8.21908 -6.22064 0.48159 0.50976 1.35168 1.36390 1.47448 2.38867 2.65806 2.97543 3.12816 3.19381 3.72401 3.81482 4.00104 4.10082 4.13064 4.14375 4.20369 4.25482 4.30532 4.32138 4.35953 4.50012 4.52883 4.59893 4.63902 4.67593 4.73428 4.76436 4.79813 4.83839 4.89304 4.93915 5.05146 5.09468 5.11102 5.16683 5.19462 5.22611 5.34810 5.38063 5.40964 5.45820 5.53679 5.54426 5.62930 5.68376 5.76510 5.82787 5.89366 6.07226 6.18037 6.38838 6.42161 6.57133 6.85304 7.40173 8.94216 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.028558 B = 0.002232 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.214765 B =12539.807242 C =12884.155604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.048 4.048 3 C -0.124 4.124 4 C -0.003 4.003 5 C -0.502 4.502 6 H 0.045 0.955 7 C -0.001 4.001 8 N -0.954 5.954 9 Si 0.941 3.059 10 H -0.271 1.271 11 H -0.288 1.288 12 H -0.250 1.250 13 C 0.083 3.917 14 N -0.680 5.680 15 C 0.087 3.913 16 C -0.112 4.112 17 C 0.058 3.942 18 N -0.496 5.496 19 C 0.098 3.902 20 C -0.157 4.157 21 C -0.101 4.101 22 C -0.157 4.157 23 C -0.101 4.101 24 C -0.185 4.185 25 C 0.066 3.934 26 C -0.101 4.101 27 H 0.066 0.934 28 H 0.026 0.974 29 H 0.036 0.964 30 H 0.043 0.957 31 H 0.035 0.965 32 H 0.067 0.933 33 H 0.012 0.988 34 H 0.010 0.990 35 H 0.262 0.738 36 H 0.024 0.976 37 H 0.063 0.937 38 H 0.345 0.655 39 H 0.036 0.964 40 H 0.075 0.925 41 H 0.083 0.917 42 H 0.092 0.908 43 H 0.047 0.953 44 H 0.126 0.874 45 H 0.140 0.860 46 H 0.139 0.861 47 H 0.139 0.861 48 H 0.134 0.866 49 H 0.039 0.961 50 H 0.087 0.913 51 H 0.070 0.930 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.030 -5.696 31.927 32.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.049 4.049 3 C -0.182 4.182 4 C -0.041 4.041 5 C -0.540 4.540 6 H 0.063 0.937 7 C -0.197 4.197 8 N -0.596 5.596 9 Si 0.766 3.234 10 H -0.197 1.197 11 H -0.214 1.214 12 H -0.173 1.173 13 C -0.047 4.047 14 N -0.313 5.313 15 C -0.023 4.023 16 C -0.150 4.150 17 C -0.069 4.069 18 N -0.211 5.211 19 C 0.001 3.999 20 C -0.177 4.177 21 C -0.120 4.120 22 C -0.176 4.176 23 C -0.120 4.120 24 C -0.206 4.206 25 C -0.059 4.059 26 C -0.139 4.139 27 H 0.085 0.915 28 H 0.046 0.954 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.086 0.914 33 H 0.030 0.970 34 H 0.028 0.972 35 H 0.071 0.929 36 H 0.042 0.958 37 H 0.082 0.918 38 H 0.166 0.834 39 H 0.054 0.946 40 H 0.094 0.906 41 H 0.101 0.899 42 H 0.110 0.890 43 H 0.065 0.935 44 H 0.144 0.856 45 H 0.158 0.842 46 H 0.157 0.843 47 H 0.157 0.843 48 H 0.152 0.848 49 H 0.057 0.943 50 H 0.105 0.895 51 H 0.089 0.911 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.951 -5.778 31.674 32.332 hybrid contribution 1.793 -0.504 -1.129 2.178 sum 4.744 -6.282 30.545 31.543 Atomic orbital electron populations 1.21507 0.94672 1.00294 1.00088 1.20351 0.96021 0.95444 0.93048 1.21693 0.99751 0.95875 1.00837 1.19599 0.95562 0.95356 0.93577 1.21427 1.30024 1.12129 0.90464 0.93729 1.25943 0.97675 1.00246 0.95822 1.70064 1.48262 1.42845 0.98418 0.85791 0.79688 0.80028 0.77901 1.19662 1.21441 1.17344 1.21879 0.95986 0.97708 0.89090 1.60476 1.63783 1.06483 1.00534 1.21570 0.95904 0.95114 0.89706 1.21740 1.03167 0.97471 0.92662 1.22238 0.93132 0.93180 0.98366 1.59031 1.49366 1.11520 1.01150 1.19190 0.94017 0.94663 0.92069 1.20997 1.00745 0.97952 0.98051 1.21311 0.97437 0.99521 0.93725 1.21391 0.96693 0.98363 1.01149 1.21317 0.99544 0.95757 0.95340 1.21529 0.97674 1.03764 0.97645 1.22187 1.00570 0.93289 0.89891 1.21545 1.00074 0.97185 0.95108 0.91461 0.95437 0.94451 0.93740 0.94561 0.91393 0.96979 0.97162 0.92916 0.95778 0.91842 0.83417 0.94596 0.90619 0.89897 0.88969 0.93500 0.85602 0.84174 0.84298 0.84271 0.84809 0.94315 0.89463 0.91108 0.91715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.09 8.06 71.98 0.58 -3.51 16 2 C -0.05 -1.79 0.60 -52.18 -0.03 -1.82 16 3 C -0.12 -4.40 7.89 71.98 0.57 -3.83 16 4 C 0.00 -0.14 3.11 29.85 0.09 -0.05 16 5 C -0.50 -28.32 8.20 25.60 0.21 -28.11 16 6 H 0.04 2.75 5.92 -2.91 -0.02 2.74 16 7 C 0.00 -0.07 5.47 84.65 0.46 0.39 16 8 N -0.95 -60.24 13.96 21.45 0.30 -59.94 16 9 Si 0.94 44.94 27.47 68.60 1.88 46.82 16 10 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 11 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 12 H -0.25 -11.10 6.54 99.48 0.65 -10.45 16 13 C 0.08 2.47 4.45 86.31 0.38 2.85 16 14 N -0.68 -16.59 5.52 -491.15 -2.71 -19.30 16 15 C 0.09 1.77 2.56 44.99 0.12 1.89 16 16 C -0.11 -1.88 5.36 30.64 0.16 -1.71 16 17 C 0.06 0.91 4.15 86.32 0.36 1.27 16 18 N -0.50 -9.10 4.70 -695.38 -3.27 -12.37 16 19 C 0.10 1.80 5.64 38.21 0.22 2.01 16 20 C -0.16 -2.68 9.16 22.40 0.21 -2.48 16 21 C -0.10 -1.44 10.04 22.25 0.22 -1.22 16 22 C -0.16 -2.07 10.04 22.29 0.22 -1.84 16 23 C -0.10 -1.39 10.04 22.25 0.22 -1.17 16 24 C -0.19 -2.98 8.82 22.40 0.20 -2.78 16 25 C 0.07 1.20 5.26 86.33 0.45 1.66 16 26 C -0.10 -2.06 5.59 30.65 0.17 -1.89 16 27 H 0.07 2.22 7.60 -2.38 -0.02 2.21 16 28 H 0.03 1.19 6.62 -2.39 -0.02 1.17 16 29 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 31 H 0.04 1.51 6.62 -2.39 -0.02 1.50 16 32 H 0.07 1.95 6.57 -2.39 -0.02 1.93 16 33 H 0.01 0.55 7.20 -2.38 -0.02 0.54 16 34 H 0.01 0.47 7.57 -2.39 -0.02 0.45 16 35 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 36 H 0.02 0.72 8.06 -2.39 -0.02 0.70 16 37 H 0.06 1.94 7.51 -2.39 -0.02 1.92 16 38 H 0.35 7.90 6.40 -89.70 -0.57 7.32 16 39 H 0.04 0.77 7.80 -2.39 -0.02 0.76 16 40 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 41 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.09 1.29 6.98 -2.38 -0.02 1.27 16 43 H 0.05 0.72 7.74 -2.39 -0.02 0.70 16 44 H 0.13 1.99 7.15 -2.91 -0.02 1.97 16 45 H 0.14 1.36 8.06 -2.91 -0.02 1.34 16 46 H 0.14 1.19 8.06 -2.91 -0.02 1.16 16 47 H 0.14 1.28 8.06 -2.91 -0.02 1.26 16 48 H 0.13 1.81 5.81 -2.91 -0.02 1.79 16 49 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 50 H 0.09 1.47 6.70 -2.39 -0.02 1.46 16 51 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 52 H 0.06 1.41 7.54 -2.39 -0.02 1.39 16 Total: -1.00 -65.55 387.98 1.27 -64.28 By element: Atomic # 1 Polarization: 20.60 SS G_CDS: 0.25 Total: 20.85 kcal Atomic # 6 Polarization: -45.16 SS G_CDS: 4.82 Total: -40.34 kcal Atomic # 7 Polarization: -85.92 SS G_CDS: -5.68 Total: -91.61 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 1.88 Total: 46.82 kcal Total: -65.55 1.27 -64.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174298519.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.057 kcal (2) G-P(sol) polarization free energy of solvation -65.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds