Wall clock time and date at job start Tue Mar 31 2020 11:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47352 * 2 1 4 4 C 1.53000 * 109.46856 * 239.99758 * 2 1 3 5 5 C 1.50701 * 109.47376 * 60.00235 * 4 2 1 6 6 H 1.07998 * 119.99585 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99890 * 179.97438 * 5 4 2 8 8 N 1.31506 * 119.99987 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 119.99607 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.46675 * 90.00352 * 9 7 5 11 11 H 1.48497 * 109.46878 * 210.00216 * 9 7 5 12 12 H 1.48491 * 109.47042 * 330.00581 * 9 7 5 13 13 C 1.52997 * 109.46669 * 119.99795 * 2 1 3 14 14 N 1.46895 * 109.47647 * 299.99654 * 13 2 1 15 15 C 1.46900 * 111.00575 * 179.97438 * 14 13 2 16 16 H 1.08997 * 109.53193 * 325.10573 * 15 14 13 17 17 C 1.53123 * 109.48930 * 85.20261 * 15 14 13 18 18 C 1.53127 * 109.15019 * 177.60800 * 17 15 14 19 19 C 1.53042 * 109.27596 * 302.34079 * 18 17 15 20 20 N 1.46843 * 109.52278 * 59.17923 * 19 18 17 21 21 C 1.39669 * 111.00037 * 174.15661 * 20 19 18 22 22 C 1.38919 * 120.07600 * 123.93254 * 21 20 19 23 23 C 1.38101 * 119.92447 * 179.77261 * 22 21 20 24 24 C 1.38285 * 120.07704 * 0.50840 * 23 22 21 25 25 C 1.38288 * 120.14752 * 359.74736 * 24 23 22 26 26 C 1.38106 * 120.07683 * 359.97438 * 25 24 23 27 27 C 1.46847 * 111.20124 * 298.25596 * 20 19 18 28 28 H 1.08997 * 109.47186 * 300.00616 * 1 2 3 29 29 H 1.09002 * 109.47051 * 59.99811 * 1 2 3 30 30 H 1.08998 * 109.47211 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47139 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.47196 * 300.00099 * 3 2 1 33 33 H 1.08997 * 109.47478 * 59.99562 * 3 2 1 34 34 H 1.08997 * 109.46797 * 180.02562 * 4 2 1 35 35 H 1.08998 * 109.47159 * 299.99969 * 4 2 1 36 36 H 0.96998 * 119.99813 * 179.97438 * 8 7 5 37 37 H 1.09009 * 109.47241 * 179.97438 * 13 2 1 38 38 H 1.08998 * 109.47386 * 60.00007 * 13 2 1 39 39 H 1.00908 * 110.99888 * 56.04711 * 14 13 2 40 40 H 1.09003 * 109.53012 * 57.70373 * 17 15 14 41 41 H 1.08997 * 109.57453 * 297.53650 * 17 15 14 42 42 H 1.08997 * 109.49981 * 182.39822 * 18 17 15 43 43 H 1.08998 * 109.53089 * 62.30397 * 18 17 15 44 44 H 1.08993 * 109.46299 * 299.16259 * 19 18 17 45 45 H 1.09000 * 109.45057 * 179.19029 * 19 18 17 46 46 H 1.08004 * 120.03474 * 0.02562 * 22 21 20 47 47 H 1.07998 * 119.96232 * 180.25186 * 23 22 21 48 48 H 1.07998 * 119.93071 * 179.72354 * 24 23 22 49 49 H 1.08006 * 119.96221 * 179.97438 * 25 24 23 50 50 H 1.07999 * 120.03678 * 179.97438 * 26 25 24 51 51 H 1.09002 * 109.46481 * 181.76055 * 27 20 19 52 52 H 1.08994 * 109.46283 * 301.73908 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0110 -2.4797 6 1 0.9172 0.8674 -2.3806 7 6 1.8712 -0.4818 -3.7320 8 7 2.6272 -1.5511 -3.8525 9 14 1.2479 0.3984 -5.2572 10 1 2.2254 1.4406 -5.6613 11 1 1.0837 -0.5809 -6.3614 12 1 -0.0605 1.0350 -4.9614 13 6 2.0399 -0.7212 1.2493 14 7 1.5504 -0.0287 2.4487 15 6 2.0208 -0.6952 3.6704 16 1 2.0619 -1.7718 3.5054 17 6 3.4171 -0.1790 4.0286 18 6 3.8750 -0.8338 5.3349 19 6 2.8594 -0.5256 6.4375 20 7 1.5404 -1.0396 6.0474 21 6 0.6186 -0.8927 7.0864 22 6 -0.5649 -0.1970 6.8739 23 6 -1.4762 -0.0576 7.9021 24 6 -1.2071 -0.6007 9.1451 25 6 -0.0276 -1.2893 9.3615 26 6 0.8856 -1.4374 8.3361 27 6 1.0590 -0.3908 4.8212 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1301 1.4424 -0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6768 1.9563 0.8899 34 1 3.1299 -0.7217 -1.2490 35 1 1.6766 -1.7489 -1.2492 36 1 2.8615 -1.8825 -4.7335 37 1 3.1300 -0.7217 1.2491 38 1 1.6766 -1.7488 1.2493 39 1 0.5438 0.0414 2.4402 40 1 3.3841 0.9031 4.1556 41 1 4.1155 -0.4310 3.2305 42 1 4.8505 -0.4384 5.6177 43 1 3.9458 -1.9126 5.1964 44 1 2.7998 0.5526 6.5853 45 1 3.1752 -1.0025 7.3654 46 1 -0.7738 0.2310 5.9045 47 1 -2.3983 0.4797 7.7365 48 1 -1.9195 -0.4864 9.9487 49 1 0.1797 -1.7119 10.3336 50 1 1.8068 -1.9749 8.5059 51 1 0.0669 -0.7696 4.5752 52 1 1.0080 0.6868 4.9765 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174398969.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:41 Heat of formation + Delta-G solvation = 15.836267 kcal Electronic energy + Delta-G solvation = -26678.871151 eV Core-core repulsion = 23256.189900 eV Total energy + Delta-G solvation = -3422.681251 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.62260 -38.48228 -37.22449 -34.72128 -33.05788 -32.18906 -31.27188 -29.49796 -28.90011 -26.86560 -26.33728 -25.33556 -24.68161 -23.48266 -22.29914 -21.80540 -21.11270 -19.81224 -17.96699 -17.77377 -16.24369 -16.07229 -15.73174 -15.38352 -15.23232 -14.66448 -14.62541 -14.31401 -14.26471 -13.80883 -13.71527 -13.53275 -13.16744 -13.01351 -12.72243 -12.61891 -12.23964 -12.06249 -11.96803 -11.69156 -11.45434 -11.31445 -11.06231 -10.93187 -10.92404 -10.75308 -10.65734 -10.59369 -10.48013 -10.21288 -10.09610 -9.87680 -9.67001 -9.17698 -9.01115 -8.81674 -8.30874 -8.12528 -8.04852 -5.95311 -3.95377 1.15094 1.16868 3.32050 3.33877 3.40428 3.43093 3.63348 4.36775 4.49510 4.56995 4.61675 4.72190 4.80466 4.84626 4.89415 5.03737 5.14893 5.18584 5.26663 5.33844 5.39710 5.40510 5.48102 5.59761 5.62810 5.70361 5.73157 5.77653 5.87517 5.88541 5.99038 6.04984 6.11604 6.18464 6.25748 6.31128 6.32411 6.35834 6.52579 6.54899 6.66510 6.75122 6.81289 6.83583 7.08033 7.21776 7.23594 7.26888 7.40591 7.65716 7.71986 7.86720 8.05042 8.49383 9.10005 9.67330 11.16344 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.025912 B = 0.002351 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.323404 B =11908.985965 C =12544.077866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.058 4.058 3 C -0.115 4.115 4 C 0.034 3.966 5 C -0.506 4.506 6 H 0.059 0.941 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.888 3.112 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.275 1.275 13 C 0.072 3.928 14 N -0.681 5.681 15 C 0.089 3.911 16 H 0.051 0.949 17 C -0.110 4.110 18 C -0.120 4.120 19 C 0.060 3.940 20 N -0.488 5.488 21 C 0.117 3.883 22 C -0.173 4.173 23 C -0.093 4.093 24 C -0.152 4.152 25 C -0.097 4.097 26 C -0.143 4.143 27 C 0.052 3.948 28 H 0.032 0.968 29 H 0.064 0.936 30 H 0.040 0.960 31 H 0.039 0.961 32 H 0.054 0.946 33 H 0.042 0.958 34 H 0.015 0.985 35 H 0.012 0.988 36 H 0.259 0.741 37 H 0.066 0.934 38 H 0.024 0.976 39 H 0.338 0.662 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.044 0.956 45 H 0.079 0.921 46 H 0.128 0.872 47 H 0.121 0.879 48 H 0.118 0.882 49 H 0.121 0.879 50 H 0.123 0.877 51 H 0.079 0.921 52 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.063 2.117 26.356 26.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.058 4.058 3 C -0.173 4.173 4 C -0.004 4.004 5 C -0.544 4.544 6 H 0.077 0.923 7 C -0.147 4.147 8 N -0.537 5.537 9 Si 0.716 3.284 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.200 1.200 13 C -0.056 4.056 14 N -0.313 5.313 15 C -0.022 4.022 16 H 0.069 0.931 17 C -0.148 4.148 18 C -0.158 4.158 19 C -0.065 4.065 20 N -0.203 5.203 21 C 0.019 3.981 22 C -0.193 4.193 23 C -0.112 4.112 24 C -0.171 4.171 25 C -0.115 4.115 26 C -0.164 4.164 27 C -0.075 4.075 28 H 0.051 0.949 29 H 0.083 0.917 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.033 0.967 35 H 0.031 0.969 36 H 0.068 0.932 37 H 0.085 0.915 38 H 0.042 0.958 39 H 0.157 0.843 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.091 0.909 43 H 0.090 0.910 44 H 0.062 0.938 45 H 0.098 0.902 46 H 0.145 0.855 47 H 0.139 0.861 48 H 0.137 0.863 49 H 0.139 0.861 50 H 0.141 0.859 51 H 0.097 0.903 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.351 1.963 26.049 26.229 hybrid contribution -0.969 0.186 -0.882 1.323 sum -3.319 2.149 25.167 25.476 Atomic orbital electron populations 1.21771 0.96129 1.00359 1.00375 1.20622 0.94680 0.96101 0.94401 1.21593 0.99743 0.95824 1.00116 1.19122 0.96095 0.94986 0.90189 1.21232 1.30763 1.11844 0.90603 0.92313 1.25021 0.95449 0.95123 0.99062 1.69964 1.37329 1.23166 1.23268 0.86662 0.79220 0.79412 0.83113 1.20796 1.21410 1.19963 1.22144 0.99819 0.94584 0.89075 1.60621 1.16149 1.53661 1.00910 1.21482 0.94383 0.97060 0.89234 0.93115 1.21599 0.96139 1.00555 0.96489 1.21649 0.97568 1.01915 0.94664 1.22250 0.87162 0.98169 0.98903 1.58926 1.02899 1.55378 1.03061 1.19005 0.93166 0.95027 0.90880 1.21391 0.95972 1.01506 1.00467 1.21023 0.98680 0.98541 0.92926 1.21059 0.97856 1.00844 0.97349 1.21003 0.93832 0.98127 0.98564 1.20789 1.00943 1.02570 0.92084 1.22407 0.98665 0.97593 0.88827 0.94874 0.91712 0.94105 0.94213 0.92746 0.93930 0.96712 0.96931 0.93179 0.91539 0.95806 0.84283 0.91411 0.91305 0.90889 0.91030 0.93772 0.90229 0.85461 0.86113 0.86345 0.86060 0.85868 0.90288 0.92721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.37 7.89 37.16 0.29 -2.08 16 2 C -0.06 -1.13 0.60 -154.51 -0.09 -1.23 16 3 C -0.12 -2.21 8.06 37.16 0.30 -1.91 16 4 C 0.03 0.84 4.04 -27.88 -0.11 0.73 16 5 C -0.51 -13.82 7.65 -34.44 -0.26 -14.09 16 6 H 0.06 1.56 5.68 -52.49 -0.30 1.26 16 7 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 8 N -0.90 -26.89 13.29 55.43 0.74 -26.15 16 9 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 13 C 0.07 1.23 4.45 -3.83 -0.02 1.22 16 14 N -0.68 -9.51 5.52 -106.64 -0.59 -10.10 16 15 C 0.09 1.09 2.65 -67.63 -0.18 0.91 16 16 H 0.05 0.70 7.80 -51.93 -0.41 0.29 16 17 C -0.11 -1.25 5.49 -26.60 -0.15 -1.40 16 18 C -0.12 -1.12 6.09 -26.64 -0.16 -1.28 16 19 C 0.06 0.56 5.26 -3.83 -0.02 0.54 16 20 N -0.49 -5.19 4.70 -171.15 -0.80 -5.99 16 21 C 0.12 1.23 5.64 -83.79 -0.47 0.76 16 22 C -0.17 -1.73 8.82 -39.38 -0.35 -2.08 16 23 C -0.09 -0.82 10.04 -39.61 -0.40 -1.22 16 24 C -0.15 -1.26 10.04 -39.55 -0.40 -1.65 16 25 C -0.10 -0.80 10.04 -39.61 -0.40 -1.20 16 26 C -0.14 -1.35 9.16 -39.38 -0.36 -1.71 16 27 C 0.05 0.57 3.41 -3.84 -0.01 0.56 16 28 H 0.03 0.51 6.57 -51.93 -0.34 0.17 16 29 H 0.06 1.30 6.62 -51.93 -0.34 0.96 16 30 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.05 1.12 6.62 -51.93 -0.34 0.77 16 33 H 0.04 0.73 7.60 -51.93 -0.39 0.33 16 34 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 36 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 37 H 0.07 1.18 7.51 -51.92 -0.39 0.79 16 38 H 0.02 0.42 8.06 -51.93 -0.42 0.00 16 39 H 0.34 4.52 6.39 -39.29 -0.25 4.27 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.07 0.86 7.54 -51.93 -0.39 0.47 16 42 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 45 H 0.08 0.64 6.71 -51.93 -0.35 0.29 16 46 H 0.13 1.20 5.81 -52.48 -0.30 0.89 16 47 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 48 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 49 H 0.12 0.73 8.06 -52.48 -0.42 0.31 16 50 H 0.12 1.01 7.15 -52.49 -0.38 0.64 16 51 H 0.08 0.86 6.99 -51.93 -0.36 0.49 16 52 H 0.05 0.60 7.72 -51.93 -0.40 0.20 16 LS Contribution 391.55 15.07 5.90 5.90 Total: -1.00 -29.51 391.55 -11.82 -41.33 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -9.16 Total: 2.11 kcal Atomic # 6 Polarization: -20.82 SS G_CDS: -2.89 Total: -23.70 kcal Atomic # 7 Polarization: -41.59 SS G_CDS: -0.66 Total: -42.25 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -29.51 -11.82 -41.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174398969.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.166 kcal (2) G-P(sol) polarization free energy of solvation -29.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds