Wall clock time and date at job start Tue Mar 31 2020 11:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47352 * 2 1 4 4 C 1.53000 * 109.46856 * 239.99758 * 2 1 3 5 5 C 1.50701 * 109.47376 * 60.00235 * 4 2 1 6 6 H 1.07998 * 119.99585 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99890 * 179.97438 * 5 4 2 8 8 N 1.31506 * 119.99987 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 119.99607 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.46675 * 90.00352 * 9 7 5 11 11 H 1.48497 * 109.46878 * 210.00216 * 9 7 5 12 12 H 1.48491 * 109.47042 * 330.00581 * 9 7 5 13 13 C 1.52997 * 109.46669 * 119.99795 * 2 1 3 14 14 N 1.46895 * 109.47647 * 299.99654 * 13 2 1 15 15 C 1.46900 * 111.00575 * 179.97438 * 14 13 2 16 16 H 1.08997 * 109.53193 * 325.10573 * 15 14 13 17 17 C 1.53123 * 109.48930 * 85.20261 * 15 14 13 18 18 C 1.53127 * 109.15019 * 177.60800 * 17 15 14 19 19 C 1.53042 * 109.27596 * 302.34079 * 18 17 15 20 20 N 1.46843 * 109.52278 * 59.17923 * 19 18 17 21 21 C 1.39669 * 111.00037 * 174.15661 * 20 19 18 22 22 C 1.38919 * 120.07600 * 123.93254 * 21 20 19 23 23 C 1.38101 * 119.92447 * 179.77261 * 22 21 20 24 24 C 1.38285 * 120.07704 * 0.50840 * 23 22 21 25 25 C 1.38288 * 120.14752 * 359.74736 * 24 23 22 26 26 C 1.38106 * 120.07683 * 359.97438 * 25 24 23 27 27 C 1.46847 * 111.20124 * 298.25596 * 20 19 18 28 28 H 1.08997 * 109.47186 * 300.00616 * 1 2 3 29 29 H 1.09002 * 109.47051 * 59.99811 * 1 2 3 30 30 H 1.08998 * 109.47211 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47139 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.47196 * 300.00099 * 3 2 1 33 33 H 1.08997 * 109.47478 * 59.99562 * 3 2 1 34 34 H 1.08997 * 109.46797 * 180.02562 * 4 2 1 35 35 H 1.08998 * 109.47159 * 299.99969 * 4 2 1 36 36 H 0.96998 * 119.99813 * 179.97438 * 8 7 5 37 37 H 1.09009 * 109.47241 * 179.97438 * 13 2 1 38 38 H 1.08998 * 109.47386 * 60.00007 * 13 2 1 39 39 H 1.00908 * 110.99888 * 56.04711 * 14 13 2 40 40 H 1.09003 * 109.53012 * 57.70373 * 17 15 14 41 41 H 1.08997 * 109.57453 * 297.53650 * 17 15 14 42 42 H 1.08997 * 109.49981 * 182.39822 * 18 17 15 43 43 H 1.08998 * 109.53089 * 62.30397 * 18 17 15 44 44 H 1.08993 * 109.46299 * 299.16259 * 19 18 17 45 45 H 1.09000 * 109.45057 * 179.19029 * 19 18 17 46 46 H 1.08004 * 120.03474 * 0.02562 * 22 21 20 47 47 H 1.07998 * 119.96232 * 180.25186 * 23 22 21 48 48 H 1.07998 * 119.93071 * 179.72354 * 24 23 22 49 49 H 1.08006 * 119.96221 * 179.97438 * 25 24 23 50 50 H 1.07999 * 120.03678 * 179.97438 * 26 25 24 51 51 H 1.09002 * 109.46481 * 181.76055 * 27 20 19 52 52 H 1.08994 * 109.46283 * 301.73908 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0110 -2.4797 6 1 0.9172 0.8674 -2.3806 7 6 1.8712 -0.4818 -3.7320 8 7 2.6272 -1.5511 -3.8525 9 14 1.2479 0.3984 -5.2572 10 1 2.2254 1.4406 -5.6613 11 1 1.0837 -0.5809 -6.3614 12 1 -0.0605 1.0350 -4.9614 13 6 2.0399 -0.7212 1.2493 14 7 1.5504 -0.0287 2.4487 15 6 2.0208 -0.6952 3.6704 16 1 2.0619 -1.7718 3.5054 17 6 3.4171 -0.1790 4.0286 18 6 3.8750 -0.8338 5.3349 19 6 2.8594 -0.5256 6.4375 20 7 1.5404 -1.0396 6.0474 21 6 0.6186 -0.8927 7.0864 22 6 -0.5649 -0.1970 6.8739 23 6 -1.4762 -0.0576 7.9021 24 6 -1.2071 -0.6007 9.1451 25 6 -0.0276 -1.2893 9.3615 26 6 0.8856 -1.4374 8.3361 27 6 1.0590 -0.3908 4.8212 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1301 1.4424 -0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6768 1.9563 0.8899 34 1 3.1299 -0.7217 -1.2490 35 1 1.6766 -1.7489 -1.2492 36 1 2.8615 -1.8825 -4.7335 37 1 3.1300 -0.7217 1.2491 38 1 1.6766 -1.7488 1.2493 39 1 0.5438 0.0414 2.4402 40 1 3.3841 0.9031 4.1556 41 1 4.1155 -0.4310 3.2305 42 1 4.8505 -0.4384 5.6177 43 1 3.9458 -1.9126 5.1964 44 1 2.7998 0.5526 6.5853 45 1 3.1752 -1.0025 7.3654 46 1 -0.7738 0.2310 5.9045 47 1 -2.3983 0.4797 7.7365 48 1 -1.9195 -0.4864 9.9487 49 1 0.1797 -1.7119 10.3336 50 1 1.8068 -1.9749 8.5059 51 1 0.0669 -0.7696 4.5752 52 1 1.0080 0.6868 4.9765 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174398969.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:40 Heat of formation + Delta-G solvation = 0.274047 kcal Electronic energy + Delta-G solvation = -26679.545979 eV Core-core repulsion = 23256.189900 eV Total energy + Delta-G solvation = -3423.356080 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.39332 -39.53149 -38.46472 -35.93400 -34.47367 -33.65436 -32.01767 -30.45455 -29.80663 -28.76431 -27.89635 -26.70651 -25.61548 -24.71882 -23.71703 -22.53125 -21.95173 -20.72481 -19.48793 -18.60685 -18.33095 -16.92316 -16.62418 -16.54416 -16.35471 -16.03608 -15.59449 -15.45545 -15.30283 -14.93575 -14.79169 -14.46400 -14.37783 -14.22641 -13.92118 -13.82679 -13.57892 -13.50919 -13.17490 -12.87187 -12.70614 -12.57882 -12.38471 -12.30703 -12.23647 -12.14962 -12.01559 -11.87272 -11.82057 -11.54866 -11.45339 -11.35017 -10.85492 -10.72238 -10.60843 -10.50652 -9.83396 -9.35287 -8.77299 -8.13930 -6.20946 0.48076 0.51128 1.40850 1.41378 1.51936 2.43254 2.54836 2.91861 3.19909 3.36027 3.68967 3.79805 4.01798 4.02851 4.10027 4.14040 4.22385 4.23345 4.30790 4.34301 4.38841 4.48688 4.53616 4.58727 4.66579 4.70091 4.72917 4.77527 4.80328 4.89132 4.93555 4.99830 5.06507 5.08275 5.16690 5.17822 5.21859 5.25221 5.36027 5.39356 5.51923 5.54114 5.54580 5.59066 5.65796 5.68457 5.87288 5.88989 5.92874 5.97634 6.12792 6.36200 6.37256 6.51107 6.94221 7.46296 8.98435 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.025912 B = 0.002351 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.323404 B =11908.985965 C =12544.077866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.053 4.053 3 C -0.106 4.106 4 C 0.039 3.961 5 C -0.512 4.512 6 H 0.067 0.933 7 C -0.006 4.006 8 N -0.938 5.938 9 Si 0.957 3.043 10 H -0.275 1.275 11 H -0.287 1.287 12 H -0.262 1.262 13 C 0.087 3.913 14 N -0.673 5.673 15 C 0.092 3.908 16 H 0.036 0.964 17 C -0.107 4.107 18 C -0.113 4.113 19 C 0.062 3.938 20 N -0.496 5.496 21 C 0.098 3.902 22 C -0.188 4.188 23 C -0.101 4.101 24 C -0.156 4.156 25 C -0.100 4.100 26 C -0.153 4.153 27 C 0.063 3.937 28 H 0.068 0.932 29 H 0.047 0.953 30 H 0.035 0.965 31 H 0.029 0.971 32 H 0.038 0.962 33 H 0.068 0.932 34 H -0.017 1.017 35 H -0.018 1.018 36 H 0.259 0.741 37 H 0.056 0.944 38 H 0.014 0.986 39 H 0.344 0.656 40 H 0.067 0.933 41 H 0.053 0.947 42 H 0.090 0.910 43 H 0.065 0.935 44 H 0.044 0.956 45 H 0.093 0.907 46 H 0.128 0.872 47 H 0.137 0.863 48 H 0.140 0.860 49 H 0.144 0.856 50 H 0.131 0.869 51 H 0.078 0.922 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.260 3.421 28.362 28.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.054 4.054 3 C -0.163 4.163 4 C 0.002 3.998 5 C -0.551 4.551 6 H 0.085 0.915 7 C -0.203 4.203 8 N -0.579 5.579 9 Si 0.782 3.218 10 H -0.201 1.201 11 H -0.213 1.213 12 H -0.186 1.186 13 C -0.042 4.042 14 N -0.306 5.306 15 C -0.019 4.019 16 H 0.054 0.946 17 C -0.146 4.146 18 C -0.151 4.151 19 C -0.063 4.063 20 N -0.211 5.211 21 C 0.001 3.999 22 C -0.209 4.209 23 C -0.120 4.120 24 C -0.175 4.175 25 C -0.118 4.118 26 C -0.173 4.173 27 C -0.065 4.065 28 H 0.087 0.913 29 H 0.066 0.934 30 H 0.054 0.946 31 H 0.048 0.952 32 H 0.057 0.943 33 H 0.087 0.913 34 H 0.002 0.998 35 H 0.001 0.999 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.032 0.968 39 H 0.164 0.836 40 H 0.086 0.914 41 H 0.072 0.928 42 H 0.109 0.891 43 H 0.084 0.916 44 H 0.062 0.938 45 H 0.112 0.888 46 H 0.146 0.854 47 H 0.155 0.845 48 H 0.158 0.842 49 H 0.162 0.838 50 H 0.149 0.851 51 H 0.097 0.903 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.561 3.281 28.079 28.493 hybrid contribution -0.595 -0.252 -1.418 1.558 sum -4.156 3.029 26.661 27.153 Atomic orbital electron populations 1.21688 0.94675 1.00347 1.01265 1.20477 0.95788 0.96109 0.93012 1.21494 0.99094 0.95168 1.00566 1.19009 0.94032 0.93953 0.92815 1.21610 1.30212 1.11850 0.91386 0.91537 1.25941 0.95772 0.95926 1.02641 1.70110 1.38906 1.24926 1.24008 0.85563 0.79119 0.78194 0.78892 1.20125 1.21309 1.18625 1.21814 0.99105 0.93925 0.89390 1.60561 1.16559 1.53088 1.00372 1.21478 0.95424 0.95996 0.88957 0.94633 1.21570 0.95188 1.00623 0.97192 1.21609 0.98526 1.01369 0.93615 1.22283 0.86515 0.98259 0.99252 1.58956 1.03497 1.55633 1.03064 1.19167 0.93442 0.96014 0.91292 1.21524 0.96318 1.02061 1.00985 1.21296 0.99114 0.98616 0.92974 1.21396 0.98241 1.00105 0.97714 1.21327 0.93512 0.97681 0.99284 1.20987 1.01680 1.02675 0.92002 1.22240 0.98027 0.97674 0.88549 0.91302 0.93396 0.94606 0.95156 0.94262 0.91295 0.99834 0.99937 0.93197 0.92571 0.96809 0.83596 0.91450 0.92790 0.89112 0.91615 0.93801 0.88850 0.85449 0.84527 0.84203 0.83803 0.85078 0.90326 0.92546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.40 7.89 71.98 0.57 -3.83 16 2 C -0.05 -2.12 0.60 -52.18 -0.03 -2.15 16 3 C -0.11 -4.00 8.06 71.98 0.58 -3.42 16 4 C 0.04 2.06 4.04 29.85 0.12 2.19 16 5 C -0.51 -28.49 7.65 25.60 0.20 -28.29 16 6 H 0.07 3.53 5.68 -2.91 -0.02 3.52 16 7 C -0.01 -0.36 5.46 84.66 0.46 0.10 16 8 N -0.94 -57.82 13.29 21.45 0.28 -57.54 16 9 Si 0.96 44.70 29.54 68.60 2.03 46.73 16 10 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 11 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 12 H -0.26 -11.61 7.11 99.48 0.71 -10.91 16 13 C 0.09 3.00 4.45 86.30 0.38 3.38 16 14 N -0.67 -18.18 5.52 -491.31 -2.71 -20.89 16 15 C 0.09 2.20 2.65 44.97 0.12 2.32 16 16 H 0.04 0.98 7.80 -2.39 -0.02 0.96 16 17 C -0.11 -2.38 5.49 30.68 0.17 -2.22 16 18 C -0.11 -1.98 6.09 30.65 0.19 -1.79 16 19 C 0.06 1.05 5.26 86.33 0.45 1.50 16 20 N -0.50 -10.00 4.70 -695.41 -3.27 -13.27 16 21 C 0.10 1.94 5.64 38.22 0.22 2.16 16 22 C -0.19 -3.53 8.82 22.40 0.20 -3.33 16 23 C -0.10 -1.61 10.04 22.25 0.22 -1.39 16 24 C -0.16 -2.20 10.04 22.29 0.22 -1.98 16 25 C -0.10 -1.42 10.04 22.25 0.22 -1.20 16 26 C -0.15 -2.61 9.16 22.40 0.21 -2.41 16 27 C 0.06 1.29 3.41 86.32 0.29 1.59 16 28 H 0.07 1.97 6.57 -2.39 -0.02 1.95 16 29 H 0.05 1.88 6.62 -2.39 -0.02 1.86 16 30 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.04 1.58 6.62 -2.39 -0.02 1.56 16 33 H 0.07 2.23 7.60 -2.39 -0.02 2.21 16 34 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 35 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 36 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 37 H 0.06 2.05 7.51 -2.38 -0.02 2.03 16 38 H 0.01 0.50 8.06 -2.39 -0.02 0.48 16 39 H 0.34 8.58 6.39 -89.69 -0.57 8.01 16 40 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.05 1.35 7.54 -2.39 -0.02 1.33 16 42 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.09 1.33 6.71 -2.39 -0.02 1.31 16 46 H 0.13 2.27 5.81 -2.91 -0.02 2.25 16 47 H 0.14 1.62 8.06 -2.91 -0.02 1.60 16 48 H 0.14 1.31 8.06 -2.91 -0.02 1.29 16 49 H 0.14 1.32 8.06 -2.91 -0.02 1.29 16 50 H 0.13 1.92 7.15 -2.91 -0.02 1.90 16 51 H 0.08 1.62 6.99 -2.39 -0.02 1.61 16 52 H 0.06 1.15 7.72 -2.39 -0.02 1.13 16 Total: -1.00 -64.72 391.55 1.43 -63.29 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: 0.31 Total: 20.45 kcal Atomic # 6 Polarization: -43.55 SS G_CDS: 4.79 Total: -38.76 kcal Atomic # 7 Polarization: -86.00 SS G_CDS: -5.70 Total: -91.70 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -64.72 1.43 -63.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174398969.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.564 kcal (2) G-P(sol) polarization free energy of solvation -64.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds