Wall clock time and date at job start Tue Mar 31 2020 11:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47322 * 2 1 4 4 N 1.46896 * 109.47288 * 239.99791 * 2 1 3 5 5 C 1.46899 * 111.00219 * 84.99793 * 4 2 1 6 6 C 1.53000 * 109.47658 * 179.97438 * 5 4 2 7 7 C 1.52993 * 109.47432 * 180.02562 * 6 5 4 8 8 C 1.50699 * 109.47235 * 180.02562 * 7 6 5 9 9 H 1.07998 * 119.99667 * 359.97438 * 8 7 6 10 10 C 1.37875 * 120.00334 * 180.02562 * 8 7 6 11 11 N 1.31516 * 119.99730 * 359.97438 * 10 8 7 12 12 Si 1.86795 * 120.00298 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47313 * 59.99825 * 12 10 8 14 14 H 1.48499 * 109.47250 * 179.97438 * 12 10 8 15 15 H 1.48499 * 109.47009 * 299.99640 * 12 10 8 16 16 C 1.50698 * 109.47090 * 119.99892 * 2 1 3 17 17 C 1.38288 * 119.92407 * 260.00205 * 16 2 1 18 18 C 1.38111 * 120.07382 * 179.69843 * 17 16 2 19 19 C 1.38906 * 119.92343 * 0.28047 * 18 17 16 20 20 N 1.39676 * 120.07171 * 179.97438 * 19 18 17 21 21 C 1.46848 * 110.99984 * 304.20484 * 20 19 18 22 22 C 1.53032 * 109.52391 * 174.16516 * 21 20 19 23 23 C 1.53114 * 109.28210 * 59.17932 * 22 21 20 24 24 C 1.53119 * 109.16176 * 302.34865 * 23 22 21 25 25 C 1.46845 * 110.99877 * 179.97438 * 20 19 18 26 26 C 1.38908 * 119.85606 * 359.97438 * 19 18 17 27 27 C 1.38112 * 119.92096 * 0.02562 * 26 19 18 28 28 H 1.08996 * 109.47277 * 300.00285 * 1 2 3 29 29 H 1.09001 * 109.46667 * 60.00357 * 1 2 3 30 30 H 1.09003 * 109.46676 * 179.97438 * 1 2 3 31 31 H 1.00900 * 111.00371 * 208.95796 * 4 2 1 32 32 H 1.08991 * 109.47362 * 300.00293 * 5 4 2 33 33 H 1.09005 * 109.46791 * 59.99894 * 5 4 2 34 34 H 1.09004 * 109.46963 * 300.00467 * 6 5 4 35 35 H 1.09000 * 109.46590 * 59.99835 * 6 5 4 36 36 H 1.09004 * 109.47147 * 300.00011 * 7 6 5 37 37 H 1.09005 * 109.47185 * 60.00092 * 7 6 5 38 38 H 0.97002 * 120.00060 * 179.97438 * 11 10 8 39 39 H 1.08002 * 119.96530 * 359.97438 * 17 16 2 40 40 H 1.07999 * 120.03725 * 180.25498 * 18 17 16 41 41 H 1.09004 * 109.45720 * 294.18019 * 21 20 19 42 42 H 1.08995 * 109.46049 * 54.14169 * 21 20 19 43 43 H 1.08996 * 109.50109 * 299.23408 * 22 21 20 44 44 H 1.09008 * 109.50255 * 179.12282 * 22 21 20 45 45 H 1.09000 * 109.52554 * 182.44174 * 23 22 21 46 46 H 1.09000 * 109.52555 * 62.25152 * 23 22 21 47 47 H 1.09004 * 109.49613 * 297.71117 * 24 23 22 48 48 H 1.09000 * 109.50629 * 177.59379 * 24 23 22 49 49 H 1.08998 * 109.46624 * 305.85226 * 25 20 19 50 50 H 1.08999 * 109.46726 * 65.82074 * 25 20 19 51 51 H 1.07998 * 120.04221 * 179.97438 * 26 19 18 52 52 H 1.08002 * 119.96339 * 180.02562 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0825 0.2225 -2.3469 6 6 2.5963 -0.5330 -3.5742 7 6 2.6623 0.4202 -4.7691 8 6 3.1678 -0.3241 -5.9780 9 1 3.4175 -1.3720 -5.9016 10 6 3.3126 0.3330 -7.1815 11 7 3.0090 1.6093 -7.2744 12 14 3.9398 -0.5893 -8.6798 13 1 3.0183 -1.7111 -8.9922 14 1 4.0037 0.3358 -9.8397 15 1 5.2956 -1.1261 -8.3989 16 6 2.0324 -0.7104 1.2305 17 6 2.4585 0.0213 2.3238 18 6 2.9136 -0.6266 3.4554 19 6 2.9485 -2.0148 3.4923 20 7 3.4086 -2.6732 4.6349 21 6 4.7614 -2.2263 4.9909 22 6 5.1744 -2.8570 6.3227 23 6 5.1384 -4.3821 6.1925 24 6 3.7315 -4.8178 5.7739 25 6 3.3597 -4.1302 4.4583 26 6 2.5247 -2.7466 2.3903 27 6 2.0707 -2.0923 1.2619 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 2.9174 -1.1206 -1.0287 32 1 1.0872 0.6162 -2.5525 33 1 2.7589 1.0461 -2.1182 34 1 3.5918 -0.9263 -3.3682 35 1 1.9203 -1.3568 -3.8029 36 1 1.6670 0.8139 -4.9752 37 1 3.3386 1.2438 -4.5400 38 1 3.1112 2.0717 -8.1210 39 1 2.4312 1.1006 2.2945 40 1 3.2424 -0.0546 4.3105 41 1 5.4610 -2.5306 4.2124 42 1 4.7722 -1.1404 5.0844 43 1 4.4832 -2.5420 7.1044 44 1 6.1846 -2.5373 6.5789 45 1 5.3900 -4.8356 7.1513 46 1 5.8578 -4.7005 5.4381 47 1 3.0175 -4.5336 6.5471 48 1 3.7106 -5.8991 5.6381 49 1 2.3527 -4.4269 4.1651 50 1 4.0656 -4.4260 3.6823 51 1 2.5509 -3.8260 2.4156 52 1 1.7407 -2.6607 0.4049 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178640163.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:15 Heat of formation + Delta-G solvation = 5.517596 kcal Electronic energy + Delta-G solvation = -25641.111692 eV Core-core repulsion = 22217.982989 eV Total energy + Delta-G solvation = -3423.128703 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.65373 -38.71406 -36.60448 -34.40851 -33.36765 -31.90613 -31.84688 -30.61415 -29.60156 -28.28084 -26.01103 -24.91159 -24.27145 -22.90561 -22.17955 -21.61603 -20.38455 -20.17632 -19.74600 -17.79448 -16.34838 -16.10426 -15.79026 -15.41233 -15.25134 -14.76697 -14.53037 -14.44308 -14.30869 -14.05621 -13.89523 -13.66944 -13.54004 -13.36787 -12.93591 -12.59248 -12.37224 -12.21538 -12.11485 -11.81319 -11.69281 -11.56950 -11.35071 -11.25692 -11.16772 -10.88695 -10.86598 -10.76679 -10.64140 -10.50440 -10.47967 -9.76947 -9.64940 -9.30064 -9.03481 -9.01699 -8.31271 -8.14636 -7.92445 -5.96575 -3.98570 1.23150 1.33395 3.33487 3.35639 3.39589 3.42434 3.71697 4.31396 4.37138 4.39723 4.48026 4.51248 4.69662 4.75900 4.81970 4.85659 4.92925 5.05516 5.14991 5.21466 5.29519 5.34062 5.36902 5.38990 5.41371 5.44645 5.49986 5.54888 5.63984 5.65629 5.73461 5.80194 5.86474 5.90793 5.94913 5.95394 6.03888 6.11960 6.25246 6.31571 6.41211 6.56567 6.63887 6.76251 6.77175 6.84637 7.12256 7.17626 7.41101 7.67996 7.72019 7.87540 8.04006 8.47371 9.08406 9.65067 11.14808 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.019862 B = 0.001967 C = 0.001872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.371590 B =14231.276083 C =14957.236885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.124 3.876 3 H 0.048 0.952 4 N -0.685 5.685 5 C 0.059 3.941 6 C -0.106 4.106 7 C 0.022 3.978 8 C -0.519 4.519 9 H 0.054 0.946 10 C 0.055 3.945 11 N -0.897 5.897 12 Si 0.893 3.107 13 H -0.277 1.277 14 H -0.288 1.288 15 H -0.277 1.277 16 C -0.109 4.109 17 C -0.090 4.090 18 C -0.142 4.142 19 C 0.106 3.894 20 N -0.489 5.489 21 C 0.057 3.943 22 C -0.119 4.119 23 C -0.124 4.124 24 C -0.119 4.119 25 C 0.050 3.950 26 C -0.172 4.172 27 C -0.072 4.072 28 H 0.052 0.948 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.339 0.661 32 H 0.067 0.933 33 H 0.024 0.976 34 H 0.044 0.956 35 H 0.056 0.944 36 H 0.016 0.984 37 H 0.013 0.987 38 H 0.260 0.740 39 H 0.121 0.879 40 H 0.121 0.879 41 H 0.042 0.958 42 H 0.081 0.919 43 H 0.072 0.928 44 H 0.070 0.930 45 H 0.065 0.935 46 H 0.061 0.939 47 H 0.071 0.929 48 H 0.070 0.930 49 H 0.083 0.917 50 H 0.045 0.955 51 H 0.125 0.875 52 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.096 -8.975 30.204 31.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.014 3.986 3 H 0.066 0.934 4 N -0.316 5.316 5 C -0.069 4.069 6 C -0.144 4.144 7 C -0.015 4.015 8 C -0.557 4.557 9 H 0.073 0.927 10 C -0.146 4.146 11 N -0.536 5.536 12 Si 0.720 3.280 13 H -0.202 1.202 14 H -0.213 1.213 15 H -0.203 1.203 16 C -0.110 4.110 17 C -0.109 4.109 18 C -0.162 4.162 19 C 0.008 3.992 20 N -0.204 5.204 21 C -0.068 4.068 22 C -0.157 4.157 23 C -0.161 4.161 24 C -0.156 4.156 25 C -0.077 4.077 26 C -0.193 4.193 27 C -0.091 4.091 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.157 0.843 32 H 0.086 0.914 33 H 0.042 0.958 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.034 0.966 37 H 0.032 0.968 38 H 0.070 0.930 39 H 0.139 0.861 40 H 0.139 0.861 41 H 0.061 0.939 42 H 0.099 0.901 43 H 0.091 0.909 44 H 0.089 0.911 45 H 0.084 0.916 46 H 0.079 0.921 47 H 0.090 0.910 48 H 0.089 0.911 49 H 0.101 0.899 50 H 0.063 0.937 51 H 0.142 0.858 52 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.202 -8.982 30.360 31.662 hybrid contribution 1.536 -0.021 -1.240 1.974 sum 1.738 -9.003 29.120 30.530 Atomic orbital electron populations 1.21766 0.93865 1.02381 1.01109 1.20402 0.95941 0.95138 0.87089 0.93449 1.60695 1.33232 1.33810 1.03877 1.22173 1.00485 0.93691 0.90581 1.21616 0.99230 0.99458 0.94144 1.19061 0.97092 0.94220 0.91173 1.21223 1.43532 0.96351 0.94596 0.92748 1.25035 0.95686 0.94903 0.98953 1.69959 1.48899 1.08965 1.25783 0.86652 0.79411 0.79603 0.82288 1.20234 1.21330 1.20296 1.19954 1.01149 0.94008 0.95914 1.20910 0.97694 0.99626 0.92672 1.20671 1.04367 0.92475 0.98698 1.18916 0.98722 0.93085 0.88444 1.59046 1.23341 1.06108 1.31925 1.22234 0.86981 1.00557 0.97029 1.21629 1.01487 0.95434 0.97125 1.21607 0.97068 0.95875 1.01593 1.21622 0.97201 0.99601 0.97215 1.22272 1.01914 0.86048 0.97450 1.21308 1.05206 0.99889 0.92888 1.20970 0.96743 0.93913 0.97488 0.92947 0.92253 0.92028 0.84332 0.91405 0.95805 0.93746 0.92567 0.96580 0.96848 0.93013 0.86077 0.86073 0.93922 0.90062 0.90947 0.91149 0.91581 0.92072 0.90987 0.91135 0.89907 0.93660 0.85767 0.84941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.64 9.39 37.16 0.35 -1.29 16 2 C 0.12 1.60 2.82 -68.87 -0.19 1.41 16 3 H 0.05 0.63 7.66 -51.93 -0.40 0.23 16 4 N -0.68 -10.17 5.68 -107.96 -0.61 -10.78 16 5 C 0.06 1.04 5.48 -3.82 -0.02 1.02 16 6 C -0.11 -2.25 5.41 -26.73 -0.14 -2.39 16 7 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 8 C -0.52 -15.00 9.11 -34.44 -0.31 -15.31 16 9 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 10 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 11 N -0.90 -27.36 13.29 55.43 0.74 -26.62 16 12 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 13 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 14 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 15 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 16 C -0.11 -1.29 4.72 -104.59 -0.49 -1.79 16 17 C -0.09 -0.98 9.66 -39.61 -0.38 -1.36 16 18 C -0.14 -1.46 9.16 -39.38 -0.36 -1.82 16 19 C 0.11 1.10 5.64 -83.79 -0.47 0.63 16 20 N -0.49 -4.38 4.70 -171.16 -0.80 -5.18 16 21 C 0.06 0.44 5.26 -3.84 -0.02 0.42 16 22 C -0.12 -0.71 6.09 -26.66 -0.16 -0.88 16 23 C -0.12 -0.70 6.00 -26.61 -0.16 -0.86 16 24 C -0.12 -0.72 6.09 -26.65 -0.16 -0.88 16 25 C 0.05 0.38 4.15 -3.84 -0.02 0.36 16 26 C -0.17 -1.83 8.82 -39.38 -0.35 -2.18 16 27 C -0.07 -0.84 8.99 -39.61 -0.36 -1.19 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.77 7.45 -51.93 -0.39 0.38 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.34 4.91 7.98 -39.29 -0.31 4.59 16 32 H 0.07 1.22 7.43 -51.93 -0.39 0.83 16 33 H 0.02 0.42 8.06 -51.93 -0.42 0.01 16 34 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 39 H 0.12 1.15 8.03 -52.49 -0.42 0.73 16 40 H 0.12 1.07 7.15 -52.49 -0.38 0.70 16 41 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.08 0.60 6.70 -51.93 -0.35 0.25 16 43 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.07 0.35 8.14 -51.92 -0.42 -0.07 16 45 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 46 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 48 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 49 H 0.08 0.63 6.98 -51.93 -0.36 0.27 16 50 H 0.05 0.35 7.73 -51.93 -0.40 -0.05 16 51 H 0.12 1.13 5.81 -52.49 -0.30 0.83 16 52 H 0.13 1.55 7.70 -52.49 -0.40 1.15 16 LS Contribution 402.36 15.07 6.06 6.06 Total: -1.00 -30.59 402.36 -12.69 -43.28 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -9.56 Total: 0.41 kcal Atomic # 6 Polarization: -20.66 SS G_CDS: -3.49 Total: -24.16 kcal Atomic # 7 Polarization: -41.90 SS G_CDS: -0.68 Total: -42.58 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -30.59 -12.69 -43.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178640163.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.800 kcal (2) G-P(sol) polarization free energy of solvation -30.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds