Wall clock time and date at job start Tue Mar 31 2020 11:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47322 * 2 1 4 4 N 1.46896 * 109.47288 * 239.99791 * 2 1 3 5 5 C 1.46899 * 111.00219 * 84.99793 * 4 2 1 6 6 C 1.53000 * 109.47658 * 179.97438 * 5 4 2 7 7 C 1.52993 * 109.47432 * 180.02562 * 6 5 4 8 8 C 1.50699 * 109.47235 * 180.02562 * 7 6 5 9 9 H 1.07998 * 119.99667 * 359.97438 * 8 7 6 10 10 C 1.37875 * 120.00334 * 180.02562 * 8 7 6 11 11 N 1.31516 * 119.99730 * 359.97438 * 10 8 7 12 12 Si 1.86795 * 120.00298 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47313 * 59.99825 * 12 10 8 14 14 H 1.48499 * 109.47250 * 179.97438 * 12 10 8 15 15 H 1.48499 * 109.47009 * 299.99640 * 12 10 8 16 16 C 1.50698 * 109.47090 * 119.99892 * 2 1 3 17 17 C 1.38288 * 119.92407 * 260.00205 * 16 2 1 18 18 C 1.38111 * 120.07382 * 179.69843 * 17 16 2 19 19 C 1.38906 * 119.92343 * 0.28047 * 18 17 16 20 20 N 1.39676 * 120.07171 * 179.97438 * 19 18 17 21 21 C 1.46848 * 110.99984 * 304.20484 * 20 19 18 22 22 C 1.53032 * 109.52391 * 174.16516 * 21 20 19 23 23 C 1.53114 * 109.28210 * 59.17932 * 22 21 20 24 24 C 1.53119 * 109.16176 * 302.34865 * 23 22 21 25 25 C 1.46845 * 110.99877 * 179.97438 * 20 19 18 26 26 C 1.38908 * 119.85606 * 359.97438 * 19 18 17 27 27 C 1.38112 * 119.92096 * 0.02562 * 26 19 18 28 28 H 1.08996 * 109.47277 * 300.00285 * 1 2 3 29 29 H 1.09001 * 109.46667 * 60.00357 * 1 2 3 30 30 H 1.09003 * 109.46676 * 179.97438 * 1 2 3 31 31 H 1.00900 * 111.00371 * 208.95796 * 4 2 1 32 32 H 1.08991 * 109.47362 * 300.00293 * 5 4 2 33 33 H 1.09005 * 109.46791 * 59.99894 * 5 4 2 34 34 H 1.09004 * 109.46963 * 300.00467 * 6 5 4 35 35 H 1.09000 * 109.46590 * 59.99835 * 6 5 4 36 36 H 1.09004 * 109.47147 * 300.00011 * 7 6 5 37 37 H 1.09005 * 109.47185 * 60.00092 * 7 6 5 38 38 H 0.97002 * 120.00060 * 179.97438 * 11 10 8 39 39 H 1.08002 * 119.96530 * 359.97438 * 17 16 2 40 40 H 1.07999 * 120.03725 * 180.25498 * 18 17 16 41 41 H 1.09004 * 109.45720 * 294.18019 * 21 20 19 42 42 H 1.08995 * 109.46049 * 54.14169 * 21 20 19 43 43 H 1.08996 * 109.50109 * 299.23408 * 22 21 20 44 44 H 1.09008 * 109.50255 * 179.12282 * 22 21 20 45 45 H 1.09000 * 109.52554 * 182.44174 * 23 22 21 46 46 H 1.09000 * 109.52555 * 62.25152 * 23 22 21 47 47 H 1.09004 * 109.49613 * 297.71117 * 24 23 22 48 48 H 1.09000 * 109.50629 * 177.59379 * 24 23 22 49 49 H 1.08998 * 109.46624 * 305.85226 * 25 20 19 50 50 H 1.08999 * 109.46726 * 65.82074 * 25 20 19 51 51 H 1.07998 * 120.04221 * 179.97438 * 26 19 18 52 52 H 1.08002 * 119.96339 * 180.02562 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0825 0.2225 -2.3469 6 6 2.5963 -0.5330 -3.5742 7 6 2.6623 0.4202 -4.7691 8 6 3.1678 -0.3241 -5.9780 9 1 3.4175 -1.3720 -5.9016 10 6 3.3126 0.3330 -7.1815 11 7 3.0090 1.6093 -7.2744 12 14 3.9398 -0.5893 -8.6798 13 1 3.0183 -1.7111 -8.9922 14 1 4.0037 0.3358 -9.8397 15 1 5.2956 -1.1261 -8.3989 16 6 2.0324 -0.7104 1.2305 17 6 2.4585 0.0213 2.3238 18 6 2.9136 -0.6266 3.4554 19 6 2.9485 -2.0148 3.4923 20 7 3.4086 -2.6732 4.6349 21 6 4.7614 -2.2263 4.9909 22 6 5.1744 -2.8570 6.3227 23 6 5.1384 -4.3821 6.1925 24 6 3.7315 -4.8178 5.7739 25 6 3.3597 -4.1302 4.4583 26 6 2.5247 -2.7466 2.3903 27 6 2.0707 -2.0923 1.2619 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 2.9174 -1.1206 -1.0287 32 1 1.0872 0.6162 -2.5525 33 1 2.7589 1.0461 -2.1182 34 1 3.5918 -0.9263 -3.3682 35 1 1.9203 -1.3568 -3.8029 36 1 1.6670 0.8139 -4.9752 37 1 3.3386 1.2438 -4.5400 38 1 3.1112 2.0717 -8.1210 39 1 2.4312 1.1006 2.2945 40 1 3.2424 -0.0546 4.3105 41 1 5.4610 -2.5306 4.2124 42 1 4.7722 -1.1404 5.0844 43 1 4.4832 -2.5420 7.1044 44 1 6.1846 -2.5373 6.5789 45 1 5.3900 -4.8356 7.1513 46 1 5.8578 -4.7005 5.4381 47 1 3.0175 -4.5336 6.5471 48 1 3.7106 -5.8991 5.6381 49 1 2.3527 -4.4269 4.1651 50 1 4.0656 -4.4260 3.6823 51 1 2.5509 -3.8260 2.4156 52 1 1.7407 -2.6607 0.4049 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178640163.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:14 Heat of formation + Delta-G solvation = -10.317916 kcal Electronic energy + Delta-G solvation = -25641.798371 eV Core-core repulsion = 22217.982989 eV Total energy + Delta-G solvation = -3423.815382 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.38582 -39.54250 -37.72357 -35.88247 -34.65844 -33.43489 -32.56349 -31.31804 -31.05432 -29.14973 -27.79717 -25.70176 -24.92634 -24.46795 -23.07429 -22.54032 -21.89912 -21.14488 -20.52145 -18.58311 -18.42933 -17.18996 -16.75367 -16.52854 -16.27273 -15.97251 -15.75946 -15.25269 -15.13166 -14.95496 -14.84873 -14.67681 -14.36448 -14.31353 -14.05698 -13.79585 -13.74682 -13.45198 -13.21531 -13.01566 -12.88344 -12.75265 -12.55662 -12.44822 -12.22587 -12.19419 -12.04500 -11.78968 -11.68217 -11.48641 -11.39916 -11.36235 -11.29454 -11.08690 -10.54877 -10.50217 -9.84818 -9.38747 -8.70645 -8.19905 -6.31063 0.39234 0.50036 1.39658 1.43135 1.51043 2.41002 2.62392 2.92606 3.12811 3.22244 3.76006 3.79322 3.83374 3.98088 4.04876 4.08605 4.19448 4.25666 4.30529 4.35795 4.38819 4.49170 4.51888 4.57366 4.59483 4.62932 4.71160 4.72359 4.81827 4.83699 4.87584 4.94124 4.95888 4.99791 5.09326 5.12491 5.17418 5.20644 5.23321 5.24008 5.35608 5.36813 5.42008 5.44332 5.51651 5.68893 5.75277 5.84641 5.85829 6.07828 6.12126 6.27642 6.35915 6.47665 6.85492 7.37886 8.91723 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.019862 B = 0.001967 C = 0.001872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.371590 B =14231.276083 C =14957.236885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.127 3.873 3 H 0.047 0.953 4 N -0.682 5.682 5 C 0.073 3.927 6 C -0.091 4.091 7 C 0.025 3.975 8 C -0.544 4.544 9 H 0.059 0.941 10 C -0.003 4.003 11 N -0.933 5.933 12 Si 0.967 3.033 13 H -0.267 1.267 14 H -0.282 1.282 15 H -0.267 1.267 16 C -0.121 4.121 17 C -0.093 4.093 18 C -0.146 4.146 19 C 0.103 3.897 20 N -0.493 5.493 21 C 0.056 3.944 22 C -0.115 4.115 23 C -0.123 4.123 24 C -0.115 4.115 25 C 0.047 3.953 26 C -0.178 4.178 27 C -0.079 4.079 28 H 0.067 0.933 29 H 0.048 0.952 30 H 0.057 0.943 31 H 0.342 0.658 32 H 0.063 0.937 33 H 0.021 0.979 34 H 0.048 0.952 35 H 0.053 0.947 36 H -0.008 1.008 37 H -0.010 1.010 38 H 0.264 0.736 39 H 0.134 0.866 40 H 0.136 0.864 41 H 0.035 0.965 42 H 0.083 0.917 43 H 0.070 0.930 44 H 0.082 0.918 45 H 0.077 0.923 46 H 0.059 0.941 47 H 0.068 0.932 48 H 0.082 0.918 49 H 0.081 0.919 50 H 0.043 0.957 51 H 0.136 0.864 52 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.843 -10.267 31.458 33.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.017 3.983 3 H 0.065 0.935 4 N -0.313 5.313 5 C -0.056 4.056 6 C -0.129 4.129 7 C -0.012 4.012 8 C -0.582 4.582 9 H 0.077 0.923 10 C -0.200 4.200 11 N -0.573 5.573 12 Si 0.791 3.209 13 H -0.192 1.192 14 H -0.208 1.208 15 H -0.192 1.192 16 C -0.122 4.122 17 C -0.112 4.112 18 C -0.166 4.166 19 C 0.005 3.995 20 N -0.209 5.209 21 C -0.070 4.070 22 C -0.153 4.153 23 C -0.161 4.161 24 C -0.153 4.153 25 C -0.079 4.079 26 C -0.199 4.199 27 C -0.098 4.098 28 H 0.086 0.914 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.160 0.840 32 H 0.082 0.918 33 H 0.039 0.961 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.010 0.990 37 H 0.008 0.992 38 H 0.072 0.928 39 H 0.151 0.849 40 H 0.153 0.847 41 H 0.054 0.946 42 H 0.101 0.899 43 H 0.089 0.911 44 H 0.101 0.899 45 H 0.096 0.904 46 H 0.078 0.922 47 H 0.087 0.913 48 H 0.101 0.899 49 H 0.099 0.901 50 H 0.061 0.939 51 H 0.153 0.847 52 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 0.950 -10.291 31.643 33.288 hybrid contribution 1.298 0.384 -1.546 2.055 sum 2.248 -9.906 30.097 31.765 Atomic orbital electron populations 1.21740 0.93430 1.02225 1.01388 1.20400 0.96235 0.94991 0.86648 0.93539 1.60625 1.33476 1.33237 1.03991 1.21867 0.99866 0.93475 0.90367 1.21364 0.99644 0.98308 0.93629 1.18967 0.94847 0.94423 0.92995 1.21669 1.43852 0.96856 0.95819 0.92264 1.26013 0.95712 0.95826 1.02480 1.70094 1.49769 1.10663 1.26808 0.85481 0.79193 0.78340 0.77917 1.19179 1.20752 1.19152 1.19859 1.02393 0.94137 0.95810 1.21069 0.97297 1.00325 0.92478 1.20863 1.04095 0.92652 0.98994 1.19121 0.98221 0.93382 0.88757 1.59093 1.23980 1.06788 1.31001 1.22301 0.86090 1.00872 0.97694 1.21623 1.02093 0.95627 0.95969 1.21619 0.96678 0.95626 1.02180 1.21616 0.97375 1.00184 0.96131 1.22337 1.01804 0.85423 0.98369 1.21449 1.05133 1.00589 0.92706 1.20974 0.97194 0.93897 0.97756 0.91369 0.93243 0.92374 0.83954 0.91839 0.96067 0.93303 0.92818 0.98993 0.99155 0.92774 0.84852 0.84657 0.94615 0.89873 0.91127 0.89899 0.90389 0.92189 0.91334 0.89905 0.90107 0.93902 0.84654 0.85473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.11 9.39 71.98 0.68 -2.44 16 2 C 0.13 3.19 2.82 44.17 0.12 3.31 16 3 H 0.05 1.19 7.66 -2.39 -0.02 1.18 16 4 N -0.68 -19.99 5.68 -495.46 -2.82 -22.81 16 5 C 0.07 2.60 5.48 86.30 0.47 3.07 16 6 C -0.09 -3.90 5.41 30.59 0.17 -3.73 16 7 C 0.03 1.37 4.97 29.85 0.15 1.52 16 8 C -0.54 -31.80 9.11 25.60 0.23 -31.57 16 9 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 10 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 11 N -0.93 -57.79 13.29 21.45 0.28 -57.50 16 12 Si 0.97 45.01 29.54 68.60 2.03 47.04 16 13 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 14 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 15 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 16 C -0.12 -2.77 4.72 -19.84 -0.09 -2.86 16 17 C -0.09 -1.90 9.66 22.25 0.21 -1.69 16 18 C -0.15 -2.81 9.16 22.40 0.21 -2.60 16 19 C 0.10 2.03 5.64 38.21 0.22 2.25 16 20 N -0.49 -8.19 4.70 -695.43 -3.27 -11.46 16 21 C 0.06 0.77 5.26 86.32 0.45 1.23 16 22 C -0.12 -1.17 6.09 30.64 0.19 -0.99 16 23 C -0.12 -1.15 6.00 30.67 0.18 -0.97 16 24 C -0.12 -1.20 6.09 30.64 0.19 -1.02 16 25 C 0.05 0.66 4.15 86.32 0.36 1.02 16 26 C -0.18 -3.64 8.82 22.40 0.20 -3.44 16 27 C -0.08 -1.79 8.99 22.25 0.20 -1.59 16 28 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.05 1.26 7.45 -2.39 -0.02 1.25 16 30 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.34 9.72 7.98 -89.69 -0.72 9.00 16 32 H 0.06 2.31 7.43 -2.39 -0.02 2.29 16 33 H 0.02 0.76 8.06 -2.38 -0.02 0.74 16 34 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 36 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 37 H -0.01 -0.58 8.14 -2.38 -0.02 -0.60 16 38 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 39 H 0.13 2.33 8.03 -2.91 -0.02 2.31 16 40 H 0.14 2.16 7.15 -2.91 -0.02 2.14 16 41 H 0.04 0.55 8.14 -2.38 -0.02 0.53 16 42 H 0.08 1.10 6.70 -2.39 -0.02 1.09 16 43 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.08 0.65 8.14 -2.38 -0.02 0.63 16 45 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 46 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 47 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 48 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 49 H 0.08 1.14 6.98 -2.39 -0.02 1.13 16 50 H 0.04 0.62 7.73 -2.39 -0.02 0.60 16 51 H 0.14 2.36 5.81 -2.91 -0.02 2.35 16 52 H 0.13 2.95 7.70 -2.91 -0.02 2.93 16 Total: -1.00 -65.20 402.36 0.97 -64.23 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: 0.15 Total: 20.69 kcal Atomic # 6 Polarization: -44.78 SS G_CDS: 4.59 Total: -40.18 kcal Atomic # 7 Polarization: -85.97 SS G_CDS: -5.80 Total: -91.77 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -65.20 0.97 -64.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178640163.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.912 kcal (2) G-P(sol) polarization free energy of solvation -65.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds