Wall clock time and date at job start Tue Mar 31 2020 11:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46897 * 2 1 4 4 C 1.52996 * 109.46991 * 174.65717 * 3 2 1 5 5 H 1.08991 * 109.49211 * 302.05469 * 4 3 2 6 6 C 1.53050 * 109.48719 * 62.12204 * 4 3 2 7 7 N 1.46962 * 109.36390 * 178.36582 * 6 4 3 8 8 C 1.46894 * 111.00249 * 176.81132 * 7 6 4 9 9 C 1.52996 * 109.47340 * 189.84787 * 8 7 6 10 10 C 1.50708 * 109.47136 * 180.02562 * 9 8 7 11 11 H 1.08001 * 119.99646 * 359.97438 * 10 9 8 12 12 C 1.37877 * 119.99734 * 179.97438 * 10 9 8 13 13 N 1.31509 * 120.00358 * 359.97438 * 12 10 9 14 14 Si 1.86805 * 119.99742 * 179.97438 * 12 10 9 15 15 H 1.48495 * 109.47171 * 59.99928 * 14 12 10 16 16 H 1.48498 * 109.46971 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47117 * 300.00035 * 14 12 10 18 18 C 1.46958 * 110.87835 * 300.68176 * 7 6 4 19 19 C 1.53050 * 109.36770 * 59.32049 * 18 7 6 20 20 N 1.46954 * 109.36177 * 301.59784 * 19 18 7 21 21 C 1.46894 * 111.00036 * 183.18863 * 20 19 18 22 22 C 1.50699 * 109.47157 * 70.29329 * 21 20 19 23 23 C 1.38234 * 120.00242 * 269.72843 * 22 21 20 24 24 C 1.38234 * 119.99961 * 179.76787 * 23 22 21 25 25 C 1.38233 * 120.00049 * 0.48180 * 24 23 22 26 26 C 1.38234 * 120.00135 * 359.79465 * 25 24 23 27 27 C 1.38232 * 119.99946 * 359.95460 * 26 25 24 28 28 H 1.08999 * 109.47340 * 60.00382 * 1 2 3 29 29 H 1.09004 * 109.46883 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47372 * 300.00061 * 1 2 3 31 31 H 1.08997 * 109.46713 * 240.00284 * 2 1 3 32 32 H 1.08993 * 109.47091 * 120.00258 * 2 1 3 33 33 H 1.08999 * 109.47103 * 294.66020 * 3 2 1 34 34 H 1.08993 * 109.46864 * 54.65513 * 3 2 1 35 35 H 1.08998 * 109.49128 * 298.33398 * 6 4 3 36 36 H 1.08999 * 109.49070 * 58.40224 * 6 4 3 37 37 H 1.09008 * 109.47016 * 309.85168 * 8 7 6 38 38 H 1.08998 * 109.47133 * 69.84299 * 8 7 6 39 39 H 1.08997 * 109.47144 * 299.99685 * 9 8 7 40 40 H 1.09002 * 109.47220 * 60.00159 * 9 8 7 41 41 H 0.96998 * 120.00657 * 179.97438 * 13 12 10 42 42 H 1.09003 * 109.48970 * 299.34633 * 18 7 6 43 43 H 1.09010 * 109.50330 * 179.29681 * 18 7 6 44 44 H 1.08998 * 109.49128 * 181.62976 * 19 18 7 45 45 H 1.09000 * 109.50405 * 61.57337 * 19 18 7 46 46 H 1.09004 * 109.47552 * 190.29654 * 21 20 19 47 47 H 1.09004 * 109.47087 * 310.29662 * 21 20 19 48 48 H 1.07998 * 119.99982 * 0.02562 * 23 22 21 49 49 H 1.08001 * 119.99967 * 180.25597 * 24 23 22 50 50 H 1.08001 * 120.00303 * 179.77181 * 25 24 23 51 51 H 1.08003 * 120.00484 * 179.97438 * 26 25 24 52 52 H 1.08003 * 120.00307 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5640 1.4447 0.1343 5 1 3.8491 0.9272 1.0502 6 6 4.1837 0.7315 -1.0698 7 7 5.6486 0.7693 -0.9577 8 6 6.2800 0.0283 -2.0577 9 6 7.7771 -0.1205 -1.7791 10 6 8.4250 -0.8802 -2.9080 11 1 7.8285 -1.2230 -3.7405 12 6 9.7792 -1.1375 -2.8778 13 7 10.5056 -0.7196 -1.8642 14 14 10.5822 -2.0799 -4.2766 15 1 10.3860 -1.3397 -5.5489 16 1 12.0353 -2.2241 -4.0063 17 1 9.9637 -3.4254 -4.3863 18 6 6.1345 2.1554 -0.9092 19 6 5.5148 2.8686 0.2949 20 7 4.0500 2.8307 0.1828 21 6 3.4185 3.5718 1.2828 22 6 3.6625 5.0475 1.0994 23 6 4.7805 5.6380 1.6584 24 6 5.0068 6.9907 1.4861 25 6 4.1099 7.7550 0.7634 26 6 2.9889 7.1657 0.2093 27 6 2.7653 5.8120 0.3771 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.7568 1.9280 -0.9339 34 1 1.6006 1.9832 0.8382 35 1 3.8473 -0.3051 -1.0912 36 1 3.8762 1.2330 -1.9874 37 1 5.8256 -0.9592 -2.1385 38 1 6.1364 0.5718 -2.9915 39 1 8.2315 0.8670 -1.6984 40 1 7.9207 -0.6640 -0.8453 41 1 11.4582 -0.9010 -1.8428 42 1 5.8491 2.6731 -1.8250 43 1 7.2204 2.1572 -0.8137 44 1 5.8512 3.9052 0.3163 45 1 5.8224 2.3674 1.2127 46 1 2.3459 3.3781 1.2827 47 1 3.8462 3.2479 2.2317 48 1 5.4793 5.0416 2.2261 49 1 5.8824 7.4512 1.9193 50 1 4.2847 8.8126 0.6319 51 1 2.2879 7.7629 -0.3550 52 1 1.8893 5.3516 -0.0554 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180274086.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:54 Heat of formation + Delta-G solvation = 19.319895 kcal Electronic energy + Delta-G solvation = -26848.449672 eV Core-core repulsion = 23425.919482 eV Total energy + Delta-G solvation = -3422.530190 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.97466 -38.80887 -35.99712 -34.91978 -33.07742 -31.74442 -31.07700 -30.65077 -29.68105 -27.41717 -26.16685 -24.63360 -23.49145 -22.68125 -22.51874 -21.15057 -21.06619 -19.79110 -19.42906 -16.90806 -16.54889 -15.78786 -15.68655 -15.36927 -15.34715 -14.65536 -14.47507 -14.45837 -14.20823 -13.79352 -13.74754 -13.50974 -13.35093 -12.84571 -12.74848 -12.67313 -12.49792 -12.25937 -12.03577 -11.70335 -11.50141 -11.32256 -11.14264 -11.05060 -10.99401 -10.89934 -10.85703 -10.67237 -10.59307 -10.39936 -10.20070 -9.79282 -9.30159 -9.10655 -8.99230 -8.84846 -8.30856 -8.24068 -7.66996 -5.97507 -3.99798 1.24338 1.32035 3.34793 3.39011 3.41462 3.58065 4.07588 4.38181 4.55188 4.65502 4.74397 4.80024 4.88105 4.92230 4.99137 5.03202 5.14824 5.23849 5.29757 5.38121 5.39102 5.42134 5.45151 5.56440 5.60897 5.65999 5.72298 5.75173 5.79984 5.80610 5.90977 5.93568 5.96330 6.01677 6.07619 6.20124 6.26112 6.29712 6.35481 6.38230 6.41417 6.46846 6.54579 6.54821 6.90126 6.99749 7.09623 7.17188 7.55154 7.61664 7.82841 7.92562 8.10798 8.46022 9.07179 9.63614 11.13837 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.011054 B = 0.003188 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2532.302758 B = 8780.638814 C =10827.859004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C -0.114 4.114 4 C 0.089 3.911 5 H 0.049 0.951 6 C 0.063 3.937 7 N -0.541 5.541 8 C 0.064 3.936 9 C 0.029 3.971 10 C -0.522 4.522 11 H 0.053 0.947 12 C 0.059 3.941 13 N -0.894 5.894 14 Si 0.892 3.108 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.277 1.277 18 C 0.058 3.942 19 C 0.058 3.942 20 N -0.529 5.529 21 C 0.085 3.915 22 C -0.070 4.070 23 C -0.113 4.113 24 C -0.121 4.121 25 C -0.124 4.124 26 C -0.123 4.123 27 C -0.100 4.100 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.076 0.924 36 H 0.034 0.966 37 H 0.059 0.941 38 H 0.019 0.981 39 H 0.016 0.984 40 H 0.023 0.977 41 H 0.261 0.739 42 H 0.034 0.966 43 H 0.089 0.911 44 H 0.077 0.923 45 H 0.040 0.960 46 H 0.087 0.913 47 H 0.041 0.959 48 H 0.119 0.881 49 H 0.120 0.880 50 H 0.118 0.882 51 H 0.119 0.881 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.214 12.550 7.990 24.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C -0.152 4.152 4 C -0.019 4.019 5 H 0.067 0.933 6 C -0.066 4.066 7 N -0.265 5.265 8 C -0.062 4.062 9 C -0.008 4.008 10 C -0.561 4.561 11 H 0.071 0.929 12 C -0.143 4.143 13 N -0.533 5.533 14 Si 0.720 3.280 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.203 1.203 18 C -0.070 4.070 19 C -0.070 4.070 20 N -0.254 5.254 21 C -0.042 4.042 22 C -0.071 4.071 23 C -0.132 4.132 24 C -0.139 4.139 25 C -0.143 4.143 26 C -0.141 4.141 27 C -0.119 4.119 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.094 0.906 36 H 0.052 0.948 37 H 0.078 0.922 38 H 0.038 0.962 39 H 0.035 0.965 40 H 0.042 0.958 41 H 0.070 0.930 42 H 0.052 0.948 43 H 0.107 0.893 44 H 0.096 0.904 45 H 0.059 0.941 46 H 0.105 0.895 47 H 0.060 0.940 48 H 0.137 0.863 49 H 0.138 0.862 50 H 0.136 0.864 51 H 0.137 0.863 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -19.015 12.525 8.053 24.152 hybrid contribution 0.643 -0.457 -0.821 1.139 sum -18.372 12.068 7.232 23.140 Atomic orbital electron populations 1.21761 0.95993 1.01468 1.01546 1.21560 0.95562 0.96718 1.02531 1.21735 0.94125 0.96873 1.02445 1.21704 0.93926 0.87842 0.98470 0.93342 1.22171 0.88973 0.99497 0.95932 1.62259 1.04173 1.13062 1.47012 1.22305 0.98689 0.95854 0.89375 1.19078 0.87449 0.97079 0.97200 1.21165 0.93229 1.35672 1.06028 0.92880 1.24984 0.97423 0.95960 0.95900 1.69957 1.06588 1.46410 1.30315 0.86665 0.78241 0.80487 0.82636 1.20291 1.21289 1.20251 1.22145 1.00524 0.88113 0.96215 1.22260 0.86360 1.00217 0.98187 1.62165 1.06513 1.13221 1.43461 1.21153 1.00439 0.89786 0.92797 1.19773 0.94885 0.95061 0.97369 1.21110 0.97027 0.94995 1.00072 1.21121 0.99340 0.94099 0.99324 1.21121 0.94963 0.99748 0.98442 1.21127 0.97819 0.95084 1.00085 1.20991 0.99374 0.93607 0.97907 0.92833 0.92847 0.93013 0.91486 0.91936 0.91234 0.91806 0.90613 0.94790 0.92206 0.96226 0.96535 0.95830 0.92970 0.94802 0.89263 0.90430 0.94145 0.89510 0.94042 0.86260 0.86211 0.86401 0.86325 0.86207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.91 37.16 0.37 -0.84 16 2 C -0.13 -1.20 5.48 -26.73 -0.15 -1.34 16 3 C -0.11 -1.16 4.50 -26.73 -0.12 -1.28 16 4 C 0.09 1.15 2.06 -67.66 -0.14 1.01 16 5 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 6 C 0.06 0.97 4.54 -3.76 -0.02 0.95 16 7 N -0.54 -10.11 4.71 -234.46 -1.10 -11.21 16 8 C 0.06 1.39 4.90 -3.83 -0.02 1.38 16 9 C 0.03 0.77 4.90 -27.88 -0.14 0.63 16 10 C -0.52 -14.96 9.11 -34.44 -0.31 -15.27 16 11 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 12 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 13 N -0.89 -27.07 13.29 55.43 0.74 -26.33 16 14 Si 0.89 21.85 29.54 -169.99 -5.02 16.82 16 15 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 16 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 C 0.06 1.04 5.41 -3.77 -0.02 1.02 16 19 C 0.06 0.85 5.34 -3.77 -0.02 0.83 16 20 N -0.53 -6.94 4.48 -227.94 -1.02 -7.97 16 21 C 0.09 0.94 4.94 -4.98 -0.02 0.91 16 22 C -0.07 -0.78 5.00 -104.62 -0.52 -1.30 16 23 C -0.11 -1.23 8.07 -39.58 -0.32 -1.55 16 24 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 25 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 26 C -0.12 -1.18 10.05 -39.59 -0.40 -1.58 16 27 C -0.10 -1.04 9.70 -39.58 -0.38 -1.43 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.68 6.81 -51.93 -0.35 0.33 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.59 5.96 -51.93 -0.31 0.28 16 35 H 0.08 1.12 6.62 -51.93 -0.34 0.77 16 36 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 1.27 8.03 -51.92 -0.42 0.86 16 38 H 0.02 0.43 8.12 -51.93 -0.42 0.01 16 39 H 0.02 0.46 6.49 -51.93 -0.34 0.12 16 40 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 42 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.09 1.76 6.34 -51.92 -0.33 1.43 16 44 H 0.08 1.09 6.06 -51.93 -0.31 0.77 16 45 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.09 0.84 5.47 -51.93 -0.28 0.56 16 47 H 0.04 0.45 8.02 -51.93 -0.42 0.04 16 48 H 0.12 1.21 7.94 -52.49 -0.42 0.79 16 49 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 50 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 51 H 0.12 0.90 8.06 -52.48 -0.42 0.47 16 52 H 0.12 1.11 8.06 -52.48 -0.42 0.68 16 LS Contribution 398.36 15.07 6.00 6.00 Total: -1.00 -30.52 398.36 -12.92 -43.44 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -9.40 Total: -1.31 kcal Atomic # 6 Polarization: -16.34 SS G_CDS: -3.11 Total: -19.45 kcal Atomic # 7 Polarization: -44.13 SS G_CDS: -1.39 Total: -45.52 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -30.52 -12.92 -43.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180274086.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.762 kcal (2) G-P(sol) polarization free energy of solvation -30.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds