Wall clock time and date at job start Tue Mar 31 2020 11:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46897 * 2 1 4 4 C 1.52996 * 109.46991 * 174.65717 * 3 2 1 5 5 H 1.08991 * 109.49211 * 302.05469 * 4 3 2 6 6 C 1.53050 * 109.48719 * 62.12204 * 4 3 2 7 7 N 1.46962 * 109.36390 * 178.36582 * 6 4 3 8 8 C 1.46894 * 111.00249 * 176.81132 * 7 6 4 9 9 C 1.52996 * 109.47340 * 189.84787 * 8 7 6 10 10 C 1.50708 * 109.47136 * 180.02562 * 9 8 7 11 11 H 1.08001 * 119.99646 * 359.97438 * 10 9 8 12 12 C 1.37877 * 119.99734 * 179.97438 * 10 9 8 13 13 N 1.31509 * 120.00358 * 359.97438 * 12 10 9 14 14 Si 1.86805 * 119.99742 * 179.97438 * 12 10 9 15 15 H 1.48495 * 109.47171 * 59.99928 * 14 12 10 16 16 H 1.48498 * 109.46971 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47117 * 300.00035 * 14 12 10 18 18 C 1.46958 * 110.87835 * 300.68176 * 7 6 4 19 19 C 1.53050 * 109.36770 * 59.32049 * 18 7 6 20 20 N 1.46954 * 109.36177 * 301.59784 * 19 18 7 21 21 C 1.46894 * 111.00036 * 183.18863 * 20 19 18 22 22 C 1.50699 * 109.47157 * 70.29329 * 21 20 19 23 23 C 1.38234 * 120.00242 * 269.72843 * 22 21 20 24 24 C 1.38234 * 119.99961 * 179.76787 * 23 22 21 25 25 C 1.38233 * 120.00049 * 0.48180 * 24 23 22 26 26 C 1.38234 * 120.00135 * 359.79465 * 25 24 23 27 27 C 1.38232 * 119.99946 * 359.95460 * 26 25 24 28 28 H 1.08999 * 109.47340 * 60.00382 * 1 2 3 29 29 H 1.09004 * 109.46883 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47372 * 300.00061 * 1 2 3 31 31 H 1.08997 * 109.46713 * 240.00284 * 2 1 3 32 32 H 1.08993 * 109.47091 * 120.00258 * 2 1 3 33 33 H 1.08999 * 109.47103 * 294.66020 * 3 2 1 34 34 H 1.08993 * 109.46864 * 54.65513 * 3 2 1 35 35 H 1.08998 * 109.49128 * 298.33398 * 6 4 3 36 36 H 1.08999 * 109.49070 * 58.40224 * 6 4 3 37 37 H 1.09008 * 109.47016 * 309.85168 * 8 7 6 38 38 H 1.08998 * 109.47133 * 69.84299 * 8 7 6 39 39 H 1.08997 * 109.47144 * 299.99685 * 9 8 7 40 40 H 1.09002 * 109.47220 * 60.00159 * 9 8 7 41 41 H 0.96998 * 120.00657 * 179.97438 * 13 12 10 42 42 H 1.09003 * 109.48970 * 299.34633 * 18 7 6 43 43 H 1.09010 * 109.50330 * 179.29681 * 18 7 6 44 44 H 1.08998 * 109.49128 * 181.62976 * 19 18 7 45 45 H 1.09000 * 109.50405 * 61.57337 * 19 18 7 46 46 H 1.09004 * 109.47552 * 190.29654 * 21 20 19 47 47 H 1.09004 * 109.47087 * 310.29662 * 21 20 19 48 48 H 1.07998 * 119.99982 * 0.02562 * 23 22 21 49 49 H 1.08001 * 119.99967 * 180.25597 * 24 23 22 50 50 H 1.08001 * 120.00303 * 179.77181 * 25 24 23 51 51 H 1.08003 * 120.00484 * 179.97438 * 26 25 24 52 52 H 1.08003 * 120.00307 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5640 1.4447 0.1343 5 1 3.8491 0.9272 1.0502 6 6 4.1837 0.7315 -1.0698 7 7 5.6486 0.7693 -0.9577 8 6 6.2800 0.0283 -2.0577 9 6 7.7771 -0.1205 -1.7791 10 6 8.4250 -0.8802 -2.9080 11 1 7.8285 -1.2230 -3.7405 12 6 9.7792 -1.1375 -2.8778 13 7 10.5056 -0.7196 -1.8642 14 14 10.5822 -2.0799 -4.2766 15 1 10.3860 -1.3397 -5.5489 16 1 12.0353 -2.2241 -4.0063 17 1 9.9637 -3.4254 -4.3863 18 6 6.1345 2.1554 -0.9092 19 6 5.5148 2.8686 0.2949 20 7 4.0500 2.8307 0.1828 21 6 3.4185 3.5718 1.2828 22 6 3.6625 5.0475 1.0994 23 6 4.7805 5.6380 1.6584 24 6 5.0068 6.9907 1.4861 25 6 4.1099 7.7550 0.7634 26 6 2.9889 7.1657 0.2093 27 6 2.7653 5.8120 0.3771 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.7568 1.9280 -0.9339 34 1 1.6006 1.9832 0.8382 35 1 3.8473 -0.3051 -1.0912 36 1 3.8762 1.2330 -1.9874 37 1 5.8256 -0.9592 -2.1385 38 1 6.1364 0.5718 -2.9915 39 1 8.2315 0.8670 -1.6984 40 1 7.9207 -0.6640 -0.8453 41 1 11.4582 -0.9010 -1.8428 42 1 5.8491 2.6731 -1.8250 43 1 7.2204 2.1572 -0.8137 44 1 5.8512 3.9052 0.3163 45 1 5.8224 2.3674 1.2127 46 1 2.3459 3.3781 1.2827 47 1 3.8462 3.2479 2.2317 48 1 5.4793 5.0416 2.2261 49 1 5.8824 7.4512 1.9193 50 1 4.2847 8.8126 0.6319 51 1 2.2879 7.7629 -0.3550 52 1 1.8893 5.3516 -0.0554 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180274086.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:53 Heat of formation + Delta-G solvation = 2.594887 kcal Electronic energy + Delta-G solvation = -26849.174923 eV Core-core repulsion = 23425.919482 eV Total energy + Delta-G solvation = -3423.255441 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.01952 -39.75800 -37.38127 -35.81285 -35.10902 -32.89466 -31.95529 -31.61018 -31.36404 -28.64788 -27.32136 -26.20633 -24.66317 -24.07338 -23.31440 -22.31385 -21.91798 -21.33284 -20.62566 -18.62500 -17.67789 -17.08558 -16.73169 -16.52549 -16.35103 -16.20271 -15.80302 -15.51866 -15.32186 -15.19107 -15.00042 -14.40776 -14.27064 -14.13952 -14.09663 -13.64186 -13.52774 -13.48495 -13.31084 -13.11390 -12.82411 -12.68190 -12.48696 -12.42145 -12.25401 -12.01849 -11.89002 -11.83892 -11.81052 -11.70846 -11.51256 -11.33659 -11.23682 -10.99525 -10.54064 -9.75757 -9.65224 -9.34785 -9.18449 -8.20436 -6.32075 0.46952 0.56244 1.39390 1.42860 1.50732 2.39677 2.70268 3.01956 3.12531 3.14866 3.78135 3.81839 3.91440 3.98972 4.11532 4.19167 4.21005 4.25591 4.29636 4.33321 4.35944 4.37636 4.46114 4.51912 4.62663 4.66281 4.67676 4.73058 4.79460 4.80324 4.84062 4.91064 4.95420 5.01671 5.05704 5.08969 5.14052 5.17310 5.21543 5.31160 5.43383 5.43728 5.51299 5.61510 5.63944 5.67456 5.73896 5.76093 6.00392 6.02551 6.13530 6.19921 6.29485 6.32174 6.84381 7.36882 8.91501 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.011054 B = 0.003188 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2532.302758 B = 8780.638814 C =10827.859004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.125 4.125 3 C -0.102 4.102 4 C 0.094 3.906 5 H 0.039 0.961 6 C 0.064 3.936 7 N -0.550 5.550 8 C 0.081 3.919 9 C 0.039 3.961 10 C -0.546 4.546 11 H 0.060 0.940 12 C 0.002 3.998 13 N -0.931 5.931 14 Si 0.966 3.034 15 H -0.267 1.267 16 H -0.282 1.282 17 H -0.266 1.266 18 C 0.062 3.938 19 C 0.070 3.930 20 N -0.531 5.531 21 C 0.090 3.910 22 C -0.085 4.085 23 C -0.129 4.129 24 C -0.131 4.131 25 C -0.130 4.130 26 C -0.129 4.129 27 C -0.109 4.109 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.031 0.969 37 H 0.065 0.935 38 H 0.016 0.984 39 H -0.007 1.007 40 H -0.009 1.009 41 H 0.264 0.736 42 H 0.027 0.973 43 H 0.060 0.940 44 H 0.085 0.915 45 H 0.032 0.968 46 H 0.105 0.895 47 H 0.041 0.959 48 H 0.118 0.882 49 H 0.133 0.867 50 H 0.139 0.861 51 H 0.140 0.860 52 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.102 13.038 7.414 25.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.163 4.163 3 C -0.140 4.140 4 C -0.015 4.015 5 H 0.057 0.943 6 C -0.064 4.064 7 N -0.275 5.275 8 C -0.046 4.046 9 C 0.002 3.998 10 C -0.585 4.585 11 H 0.078 0.922 12 C -0.196 4.196 13 N -0.571 5.571 14 Si 0.791 3.209 15 H -0.192 1.192 16 H -0.207 1.207 17 H -0.191 1.191 18 C -0.066 4.066 19 C -0.058 4.058 20 N -0.256 5.256 21 C -0.036 4.036 22 C -0.086 4.086 23 C -0.147 4.147 24 C -0.149 4.149 25 C -0.148 4.148 26 C -0.147 4.147 27 C -0.128 4.128 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.101 0.899 36 H 0.049 0.951 37 H 0.083 0.917 38 H 0.035 0.965 39 H 0.011 0.989 40 H 0.010 0.990 41 H 0.073 0.927 42 H 0.045 0.955 43 H 0.079 0.921 44 H 0.103 0.897 45 H 0.051 0.949 46 H 0.123 0.877 47 H 0.059 0.941 48 H 0.136 0.864 49 H 0.151 0.849 50 H 0.157 0.843 51 H 0.158 0.842 52 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -20.933 13.020 7.484 25.763 hybrid contribution 1.229 -0.546 -0.600 1.472 sum -19.704 12.475 6.884 24.316 Atomic orbital electron populations 1.21730 0.94582 1.01977 1.02140 1.21548 0.96770 0.96001 1.02004 1.21661 0.91629 0.97647 1.03104 1.21684 0.95720 0.87397 0.96657 0.94282 1.22261 0.86508 1.00462 0.97122 1.62190 1.06376 1.13327 1.45606 1.21946 0.95867 0.96641 0.90161 1.18885 0.90644 0.94969 0.95299 1.21593 0.94022 1.36127 1.06748 0.92225 1.25964 0.98082 0.96830 0.98728 1.70100 1.07005 1.47535 1.32445 0.85485 0.77132 0.79231 0.79100 1.19189 1.20737 1.19069 1.22057 0.99127 0.87990 0.97442 1.22053 0.87729 0.99934 0.96054 1.62161 1.05206 1.13448 1.44787 1.21182 1.01100 0.89579 0.91784 1.19843 0.95427 0.95057 0.98224 1.21243 0.97275 0.95640 1.00581 1.21380 1.00090 0.93962 0.99493 1.21447 0.94671 1.00865 0.97785 1.21443 0.98208 0.95087 0.99917 1.21208 0.99650 0.94112 0.97801 0.92518 0.92449 0.92126 0.92365 0.92185 0.91243 0.90132 0.89890 0.95063 0.91698 0.96533 0.98900 0.99035 0.92734 0.95460 0.92134 0.89670 0.94926 0.87749 0.94087 0.86391 0.84870 0.84337 0.84239 0.85078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.91 71.98 0.71 -1.31 16 2 C -0.13 -2.16 5.48 30.60 0.17 -1.99 16 3 C -0.10 -1.88 4.50 30.59 0.14 -1.74 16 4 C 0.09 2.34 2.06 44.92 0.09 2.44 16 5 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 6 C 0.06 1.96 4.54 86.31 0.39 2.35 16 7 N -0.55 -21.17 4.71 -895.70 -4.22 -25.39 16 8 C 0.08 3.62 4.90 86.30 0.42 4.04 16 9 C 0.04 2.18 4.90 29.85 0.15 2.32 16 10 C -0.55 -31.97 9.11 25.60 0.23 -31.73 16 11 H 0.06 3.33 7.74 -2.91 -0.02 3.30 16 12 C 0.00 0.12 5.46 84.66 0.46 0.58 16 13 N -0.93 -57.79 13.29 21.45 0.28 -57.50 16 14 Si 0.97 44.93 29.54 68.60 2.03 46.95 16 15 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 16 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 17 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 18 C 0.06 2.31 5.41 86.31 0.47 2.78 16 19 C 0.07 2.12 5.34 86.31 0.46 2.58 16 20 N -0.53 -13.53 4.48 -875.06 -3.92 -17.46 16 21 C 0.09 1.85 4.94 85.56 0.42 2.27 16 22 C -0.08 -1.78 5.00 -19.86 -0.10 -1.88 16 23 C -0.13 -2.71 8.07 22.27 0.18 -2.53 16 24 C -0.13 -2.48 10.05 22.27 0.22 -2.25 16 25 C -0.13 -2.22 10.05 22.27 0.22 -2.00 16 26 C -0.13 -2.20 10.05 22.27 0.22 -1.98 16 27 C -0.11 -2.07 9.70 22.27 0.22 -1.85 16 28 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.06 1.10 6.81 -2.39 -0.02 1.09 16 32 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.08 1.24 5.96 -2.39 -0.01 1.23 16 35 H 0.08 2.40 6.62 -2.39 -0.02 2.38 16 36 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.06 2.80 8.03 -2.38 -0.02 2.78 16 38 H 0.02 0.74 8.12 -2.39 -0.02 0.72 16 39 H -0.01 -0.43 6.49 -2.39 -0.02 -0.45 16 40 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 41 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 42 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.06 2.56 6.34 -2.38 -0.02 2.55 16 44 H 0.09 2.42 6.06 -2.39 -0.01 2.41 16 45 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.10 1.76 5.47 -2.38 -0.01 1.75 16 47 H 0.04 0.86 8.02 -2.38 -0.02 0.84 16 48 H 0.12 2.40 7.94 -2.91 -0.02 2.38 16 49 H 0.13 2.03 8.06 -2.91 -0.02 2.01 16 50 H 0.14 1.72 8.06 -2.91 -0.02 1.69 16 51 H 0.14 1.72 8.06 -2.91 -0.02 1.70 16 52 H 0.13 2.10 8.06 -2.91 -0.02 2.08 16 Total: -1.00 -66.74 398.36 0.11 -66.63 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: 0.85 Total: 16.66 kcal Atomic # 6 Polarization: -34.99 SS G_CDS: 5.09 Total: -29.90 kcal Atomic # 7 Polarization: -92.48 SS G_CDS: -7.86 Total: -100.34 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.95 kcal Total: -66.74 0.11 -66.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180274086.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.222 kcal (2) G-P(sol) polarization free energy of solvation -66.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds