Wall clock time and date at job start Tue Mar 31 2020 11:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47073 * 2 1 4 4 N 1.46899 * 109.46985 * 119.99717 * 2 1 3 5 5 C 1.46841 * 111.00281 * 175.00140 * 4 2 1 6 6 C 1.53042 * 109.52629 * 174.16212 * 5 4 2 7 7 C 1.53117 * 109.27613 * 59.17734 * 6 5 4 8 8 N 1.46901 * 109.52200 * 182.38087 * 7 6 5 9 9 C 1.46899 * 110.99972 * 204.87813 * 8 7 6 10 10 H 1.08998 * 109.47298 * 34.99402 * 9 8 7 11 11 C 1.53000 * 109.47136 * 154.99941 * 9 8 7 12 12 C 1.50700 * 109.46889 * 294.99416 * 11 9 8 13 13 H 1.08001 * 120.00140 * 0.02562 * 12 11 9 14 14 C 1.37885 * 120.00038 * 180.02562 * 12 11 9 15 15 N 1.31512 * 119.99810 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 119.99946 * 180.02562 * 14 12 11 17 17 H 1.48492 * 109.46934 * 90.00317 * 16 14 12 18 18 H 1.48503 * 109.46980 * 210.00233 * 16 14 12 19 19 H 1.48503 * 109.47438 * 329.99942 * 16 14 12 20 20 C 1.50700 * 109.46646 * 274.99208 * 9 8 7 21 21 C 1.38232 * 120.00293 * 319.73172 * 20 9 8 22 22 C 1.38237 * 119.99691 * 179.78511 * 21 20 9 23 23 C 1.38234 * 120.00474 * 0.44088 * 22 21 20 24 24 C 1.38234 * 119.99653 * 359.81277 * 23 22 21 25 25 C 1.38232 * 120.00257 * 359.97438 * 24 23 22 26 26 C 1.53120 * 109.16267 * 302.34396 * 7 6 5 27 27 C 1.46850 * 110.99956 * 50.78828 * 4 2 1 28 28 H 1.08997 * 109.47479 * 300.00749 * 1 2 3 29 29 H 1.09003 * 109.46648 * 59.99768 * 1 2 3 30 30 H 1.08994 * 109.47250 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47313 * 240.00008 * 2 1 3 32 32 H 1.08999 * 109.47044 * 59.99844 * 3 2 1 33 33 H 1.08999 * 109.47166 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.46865 * 299.99485 * 3 2 1 35 35 H 1.08998 * 109.46320 * 54.14149 * 5 4 2 36 36 H 1.08998 * 109.45620 * 294.17285 * 5 4 2 37 37 H 1.09003 * 109.49792 * 299.23877 * 6 5 4 38 38 H 1.08994 * 109.50340 * 179.12119 * 6 5 4 39 39 H 1.09002 * 109.52261 * 62.25263 * 7 6 5 40 40 H 1.00896 * 111.00110 * 80.91649 * 8 7 6 41 41 H 1.09003 * 109.47382 * 54.99513 * 11 9 8 42 42 H 1.09003 * 109.47186 * 174.99930 * 11 9 8 43 43 H 0.96998 * 120.00038 * 180.02562 * 15 14 12 44 44 H 1.08002 * 119.99897 * 359.97438 * 21 20 9 45 45 H 1.08006 * 119.99590 * 180.26809 * 22 21 20 46 46 H 1.07991 * 120.00362 * 179.83240 * 23 22 21 47 47 H 1.08002 * 119.99884 * 180.02562 * 24 23 22 48 48 H 1.07998 * 120.00462 * 180.02562 * 25 24 23 49 49 H 1.09002 * 109.50326 * 177.59202 * 26 7 6 50 50 H 1.08999 * 109.50267 * 297.71858 * 26 7 6 51 51 H 1.09002 * 109.46123 * 305.85896 * 27 4 2 52 52 H 1.08998 * 109.45942 * 65.83350 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 3.4826 -0.8164 1.1753 6 6 3.9678 -1.4089 2.5003 7 6 3.3238 -2.7828 2.7056 8 7 3.7412 -3.3317 4.0027 9 6 3.6645 -4.7987 4.0027 10 1 3.9291 -5.1764 3.0151 11 6 4.6378 -5.3602 5.0411 12 6 6.0513 -5.0350 4.6322 13 1 6.2369 -4.4826 3.7229 14 6 7.1077 -5.4426 5.4191 15 7 6.8817 -6.1156 6.5261 16 14 8.8598 -5.0388 4.9126 17 1 9.2542 -3.7308 5.4944 18 1 9.7750 -6.0976 5.4090 19 1 8.9430 -4.9671 3.4316 20 6 2.2613 -5.2283 4.3456 21 6 1.5541 -4.5596 5.3272 22 6 0.2653 -4.9509 5.6385 23 6 -0.3129 -6.0167 4.9746 24 6 0.3962 -6.6887 3.9967 25 6 1.6834 -6.2946 3.6822 26 6 1.8002 -2.6328 2.6785 27 6 1.3779 -2.0049 1.3483 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 3.1300 1.4426 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 3.9282 0.1681 1.0328 36 1 3.7780 -1.4707 0.3551 37 1 3.6846 -0.7481 3.3197 38 1 5.0522 -1.5152 2.4760 39 1 3.6379 -3.4552 1.9073 40 1 3.1928 -2.9409 4.7541 41 1 4.4290 -4.9140 6.0135 42 1 4.5176 -6.4418 5.1043 43 1 7.6249 -6.4021 7.0798 44 1 2.0073 -3.7295 5.8487 45 1 -0.2888 -4.4257 6.4024 46 1 -1.3187 -6.3241 5.2197 47 1 -0.0557 -7.5211 3.4777 48 1 2.2373 -6.8194 2.9179 49 1 1.3360 -3.6137 2.7814 50 1 1.4830 -1.9913 3.5007 51 1 0.2948 -1.8835 1.3315 52 1 1.6834 -2.6536 0.5274 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180686096.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:10 Heat of formation + Delta-G solvation = 20.274866 kcal Electronic energy + Delta-G solvation = -27570.645802 eV Core-core repulsion = 24148.157022 eV Total energy + Delta-G solvation = -3422.488779 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.77828 -38.89461 -36.47001 -34.26199 -32.48511 -31.07524 -30.94168 -30.55007 -29.12687 -27.75828 -27.33826 -24.55368 -22.98817 -22.63527 -22.19089 -21.80010 -20.29901 -19.94617 -19.29957 -16.97578 -16.50671 -16.02313 -15.20664 -14.88753 -14.87206 -14.66855 -14.55022 -14.21311 -14.00361 -13.62874 -13.56747 -13.11528 -12.95482 -12.87853 -12.63664 -12.37780 -12.33122 -12.06942 -11.99265 -11.75554 -11.36415 -11.21332 -11.18835 -11.04814 -11.03073 -10.91383 -10.77455 -10.58654 -10.55580 -10.20824 -10.13402 -10.01057 -9.58762 -8.98176 -8.60256 -8.31420 -8.24253 -8.14488 -7.61767 -5.86540 -3.84615 1.71991 1.72861 3.40711 3.46499 3.49752 3.81801 4.13489 4.57810 4.67952 4.74104 4.81502 4.97249 5.14163 5.16944 5.19001 5.21498 5.28933 5.34157 5.39899 5.44533 5.47054 5.50588 5.54098 5.59508 5.64718 5.68806 5.73206 5.82796 5.85443 5.86907 5.90920 5.93769 6.06208 6.11576 6.13214 6.18082 6.30501 6.33672 6.39568 6.52437 6.59179 6.78019 6.79494 6.86895 7.01500 7.12668 7.15260 7.34436 7.57746 7.70024 8.01786 8.07372 8.17755 8.58446 9.20351 9.76513 11.25363 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.009595 B = 0.004509 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2917.606486 B = 6208.031997 C = 8677.180985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.075 3.925 3 C -0.144 4.144 4 N -0.532 5.532 5 C 0.055 3.945 6 C -0.102 4.102 7 C 0.089 3.911 8 N -0.653 5.653 9 C 0.129 3.871 10 H 0.072 0.928 11 C 0.042 3.958 12 C -0.488 4.488 13 H 0.059 0.941 14 C 0.051 3.949 15 N -0.903 5.903 16 Si 0.890 3.110 17 H -0.282 1.282 18 H -0.290 1.290 19 H -0.276 1.276 20 C -0.085 4.085 21 C -0.117 4.117 22 C -0.118 4.118 23 C -0.138 4.138 24 C -0.121 4.121 25 C -0.120 4.120 26 C -0.144 4.144 27 C 0.057 3.943 28 H 0.063 0.937 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.036 0.964 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.075 0.925 36 H 0.029 0.971 37 H 0.068 0.932 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.334 0.666 41 H 0.018 0.982 42 H 0.018 0.982 43 H 0.257 0.743 44 H 0.119 0.881 45 H 0.115 0.885 46 H 0.113 0.887 47 H 0.114 0.886 48 H 0.117 0.883 49 H 0.068 0.932 50 H 0.067 0.933 51 H 0.074 0.926 52 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.216 9.160 -10.880 20.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.033 4.033 3 C -0.201 4.201 4 N -0.258 5.258 5 C -0.073 4.073 6 C -0.141 4.141 7 C -0.022 4.022 8 N -0.282 5.282 9 C 0.020 3.980 10 H 0.090 0.910 11 C 0.005 3.995 12 C -0.527 4.527 13 H 0.077 0.923 14 C -0.148 4.148 15 N -0.543 5.543 16 Si 0.719 3.281 17 H -0.209 1.209 18 H -0.217 1.217 19 H -0.201 1.201 20 C -0.086 4.086 21 C -0.135 4.135 22 C -0.136 4.136 23 C -0.156 4.156 24 C -0.139 4.139 25 C -0.138 4.138 26 C -0.184 4.184 27 C -0.071 4.071 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.054 0.946 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.093 0.907 36 H 0.047 0.953 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.086 0.914 40 H 0.154 0.846 41 H 0.037 0.963 42 H 0.036 0.964 43 H 0.067 0.933 44 H 0.137 0.863 45 H 0.133 0.867 46 H 0.131 0.869 47 H 0.132 0.868 48 H 0.135 0.865 49 H 0.087 0.913 50 H 0.086 0.914 51 H 0.093 0.907 52 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -14.537 9.382 -10.475 20.225 hybrid contribution 0.193 -0.568 -0.770 0.976 sum -14.343 8.814 -11.245 20.245 Atomic orbital electron populations 1.21956 0.94650 1.01986 1.02070 1.21581 0.95366 0.95177 0.91193 1.21855 1.01148 0.95266 1.01861 1.62020 1.05996 1.19901 1.37908 1.22163 0.87182 1.00290 0.97678 1.21545 1.00597 0.95812 0.96132 1.21660 0.91460 0.95870 0.93175 1.60706 1.58937 1.05537 1.03003 1.21024 0.88743 0.86731 1.01523 0.90977 1.19089 0.92565 0.95142 0.92739 1.21105 0.90399 1.33400 1.07763 0.92257 1.24992 0.98891 0.95700 0.95249 1.69968 1.31126 1.39251 1.13988 0.86627 0.85094 0.77791 0.78604 1.20876 1.21661 1.20112 1.21163 0.97744 0.94982 0.94751 1.20945 0.94387 1.00571 0.97625 1.21043 0.95489 0.97422 0.99685 1.20983 0.99721 0.97117 0.97789 1.21059 0.95018 0.99659 0.98159 1.21066 0.95033 0.97247 1.00501 1.22448 0.98306 1.00450 0.97185 1.22110 0.99046 0.88731 0.97205 0.91744 0.92462 0.92428 0.94624 0.91790 0.92529 0.92595 0.90679 0.95290 0.91344 0.90626 0.91398 0.84615 0.96318 0.96428 0.93326 0.86282 0.86709 0.86913 0.86804 0.86452 0.91328 0.91420 0.90747 0.95439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 8.65 37.16 0.32 -0.97 16 2 C 0.08 0.74 2.69 -67.71 -0.18 0.56 16 3 C -0.14 -1.26 9.10 37.16 0.34 -0.92 16 4 N -0.53 -6.22 4.52 -226.69 -1.03 -7.25 16 5 C 0.05 0.67 5.29 -3.83 -0.02 0.65 16 6 C -0.10 -1.45 5.70 -26.65 -0.15 -1.60 16 7 C 0.09 1.36 2.53 -67.59 -0.17 1.18 16 8 N -0.65 -11.77 5.76 -100.82 -0.58 -12.35 16 9 C 0.13 2.55 2.17 -68.87 -0.15 2.40 16 10 H 0.07 1.46 7.29 -51.93 -0.38 1.08 16 11 C 0.04 1.06 4.63 -27.88 -0.13 0.93 16 12 C -0.49 -13.56 8.84 -34.44 -0.30 -13.87 16 13 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 14 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 15 N -0.90 -27.32 13.29 55.43 0.74 -26.59 16 16 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 17 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 18 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 C -0.08 -1.45 2.95 -104.62 -0.31 -1.76 16 21 C -0.12 -1.86 8.49 -39.58 -0.34 -2.19 16 22 C -0.12 -1.66 10.05 -39.58 -0.40 -2.05 16 23 C -0.14 -1.84 10.05 -39.58 -0.40 -2.24 16 24 C -0.12 -1.68 10.05 -39.59 -0.40 -2.08 16 25 C -0.12 -1.90 9.66 -39.58 -0.38 -2.29 16 26 C -0.14 -1.93 4.74 -26.65 -0.13 -2.06 16 27 C 0.06 0.69 5.01 -3.83 -0.02 0.67 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.50 6.19 -51.93 -0.32 0.18 16 31 H 0.04 0.37 8.13 -51.93 -0.42 -0.05 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.50 6.40 -51.93 -0.33 0.17 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.84 6.18 -51.93 -0.32 0.52 16 36 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.07 1.11 7.43 -51.93 -0.39 0.73 16 40 H 0.33 5.75 6.08 -39.29 -0.24 5.51 16 41 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 44 H 0.12 1.87 6.53 -52.49 -0.34 1.52 16 45 H 0.11 1.35 8.06 -52.48 -0.42 0.92 16 46 H 0.11 1.22 8.06 -52.49 -0.42 0.80 16 47 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 48 H 0.12 1.78 8.04 -52.49 -0.42 1.35 16 49 H 0.07 0.98 6.16 -51.93 -0.32 0.66 16 50 H 0.07 0.94 8.10 -51.93 -0.42 0.52 16 51 H 0.07 0.83 5.83 -51.93 -0.30 0.53 16 52 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 394.48 15.07 5.94 5.94 Total: -1.00 -29.73 394.48 -12.10 -41.83 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -9.25 Total: 5.63 kcal Atomic # 6 Polarization: -21.36 SS G_CDS: -2.91 Total: -24.27 kcal Atomic # 7 Polarization: -45.31 SS G_CDS: -0.87 Total: -46.18 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -29.73 -12.10 -41.83 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180686096.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.109 kcal (2) G-P(sol) polarization free energy of solvation -29.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds