Wall clock time and date at job start Tue Mar 31 2020 11:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47073 * 2 1 4 4 N 1.46899 * 109.46985 * 119.99717 * 2 1 3 5 5 C 1.46841 * 111.00281 * 175.00140 * 4 2 1 6 6 C 1.53042 * 109.52629 * 174.16212 * 5 4 2 7 7 C 1.53117 * 109.27613 * 59.17734 * 6 5 4 8 8 N 1.46901 * 109.52200 * 182.38087 * 7 6 5 9 9 C 1.46899 * 110.99972 * 204.87813 * 8 7 6 10 10 H 1.08998 * 109.47298 * 34.99402 * 9 8 7 11 11 C 1.53000 * 109.47136 * 154.99941 * 9 8 7 12 12 C 1.50700 * 109.46889 * 294.99416 * 11 9 8 13 13 H 1.08001 * 120.00140 * 0.02562 * 12 11 9 14 14 C 1.37885 * 120.00038 * 180.02562 * 12 11 9 15 15 N 1.31512 * 119.99810 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 119.99946 * 180.02562 * 14 12 11 17 17 H 1.48492 * 109.46934 * 90.00317 * 16 14 12 18 18 H 1.48503 * 109.46980 * 210.00233 * 16 14 12 19 19 H 1.48503 * 109.47438 * 329.99942 * 16 14 12 20 20 C 1.50700 * 109.46646 * 274.99208 * 9 8 7 21 21 C 1.38232 * 120.00293 * 319.73172 * 20 9 8 22 22 C 1.38237 * 119.99691 * 179.78511 * 21 20 9 23 23 C 1.38234 * 120.00474 * 0.44088 * 22 21 20 24 24 C 1.38234 * 119.99653 * 359.81277 * 23 22 21 25 25 C 1.38232 * 120.00257 * 359.97438 * 24 23 22 26 26 C 1.53120 * 109.16267 * 302.34396 * 7 6 5 27 27 C 1.46850 * 110.99956 * 50.78828 * 4 2 1 28 28 H 1.08997 * 109.47479 * 300.00749 * 1 2 3 29 29 H 1.09003 * 109.46648 * 59.99768 * 1 2 3 30 30 H 1.08994 * 109.47250 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47313 * 240.00008 * 2 1 3 32 32 H 1.08999 * 109.47044 * 59.99844 * 3 2 1 33 33 H 1.08999 * 109.47166 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.46865 * 299.99485 * 3 2 1 35 35 H 1.08998 * 109.46320 * 54.14149 * 5 4 2 36 36 H 1.08998 * 109.45620 * 294.17285 * 5 4 2 37 37 H 1.09003 * 109.49792 * 299.23877 * 6 5 4 38 38 H 1.08994 * 109.50340 * 179.12119 * 6 5 4 39 39 H 1.09002 * 109.52261 * 62.25263 * 7 6 5 40 40 H 1.00896 * 111.00110 * 80.91649 * 8 7 6 41 41 H 1.09003 * 109.47382 * 54.99513 * 11 9 8 42 42 H 1.09003 * 109.47186 * 174.99930 * 11 9 8 43 43 H 0.96998 * 120.00038 * 180.02562 * 15 14 12 44 44 H 1.08002 * 119.99897 * 359.97438 * 21 20 9 45 45 H 1.08006 * 119.99590 * 180.26809 * 22 21 20 46 46 H 1.07991 * 120.00362 * 179.83240 * 23 22 21 47 47 H 1.08002 * 119.99884 * 180.02562 * 24 23 22 48 48 H 1.07998 * 120.00462 * 180.02562 * 25 24 23 49 49 H 1.09002 * 109.50326 * 177.59202 * 26 7 6 50 50 H 1.08999 * 109.50267 * 297.71858 * 26 7 6 51 51 H 1.09002 * 109.46123 * 305.85896 * 27 4 2 52 52 H 1.08998 * 109.45942 * 65.83350 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 3.4826 -0.8164 1.1753 6 6 3.9678 -1.4089 2.5003 7 6 3.3238 -2.7828 2.7056 8 7 3.7412 -3.3317 4.0027 9 6 3.6645 -4.7987 4.0027 10 1 3.9291 -5.1764 3.0151 11 6 4.6378 -5.3602 5.0411 12 6 6.0513 -5.0350 4.6322 13 1 6.2369 -4.4826 3.7229 14 6 7.1077 -5.4426 5.4191 15 7 6.8817 -6.1156 6.5261 16 14 8.8598 -5.0388 4.9126 17 1 9.2542 -3.7308 5.4944 18 1 9.7750 -6.0976 5.4090 19 1 8.9430 -4.9671 3.4316 20 6 2.2613 -5.2283 4.3456 21 6 1.5541 -4.5596 5.3272 22 6 0.2653 -4.9509 5.6385 23 6 -0.3129 -6.0167 4.9746 24 6 0.3962 -6.6887 3.9967 25 6 1.6834 -6.2946 3.6822 26 6 1.8002 -2.6328 2.6785 27 6 1.3779 -2.0049 1.3483 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 3.1300 1.4426 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 3.9282 0.1681 1.0328 36 1 3.7780 -1.4707 0.3551 37 1 3.6846 -0.7481 3.3197 38 1 5.0522 -1.5152 2.4760 39 1 3.6379 -3.4552 1.9073 40 1 3.1928 -2.9409 4.7541 41 1 4.4290 -4.9140 6.0135 42 1 4.5176 -6.4418 5.1043 43 1 7.6249 -6.4021 7.0798 44 1 2.0073 -3.7295 5.8487 45 1 -0.2888 -4.4257 6.4024 46 1 -1.3187 -6.3241 5.2197 47 1 -0.0557 -7.5211 3.4777 48 1 2.2373 -6.8194 2.9179 49 1 1.3360 -3.6137 2.7814 50 1 1.4830 -1.9913 3.5007 51 1 0.2948 -1.8835 1.3315 52 1 1.6834 -2.6536 0.5274 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180686096.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:09 Heat of formation + Delta-G solvation = 3.813504 kcal Electronic energy + Delta-G solvation = -27571.359620 eV Core-core repulsion = 24148.157022 eV Total energy + Delta-G solvation = -3423.202598 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.97088 -39.96643 -37.69053 -35.66502 -34.36535 -32.25079 -32.00256 -31.69704 -30.59888 -29.27613 -28.07576 -26.30209 -24.13639 -23.79919 -23.58489 -23.10637 -21.33966 -21.15892 -20.55106 -18.59126 -17.73219 -17.48930 -16.52812 -16.42665 -16.13058 -15.85747 -15.58339 -15.46035 -15.18159 -14.81668 -14.70868 -14.38935 -14.21765 -14.09015 -13.90439 -13.76469 -13.53133 -13.32637 -13.07332 -12.83903 -12.70695 -12.65184 -12.48002 -12.28731 -12.20080 -12.14124 -12.10092 -12.02720 -11.78487 -11.73174 -11.54190 -11.38816 -11.09763 -11.02033 -10.49033 -9.76393 -9.46468 -9.24196 -9.02754 -8.09428 -6.14970 0.53646 0.55568 1.41492 1.43108 1.53252 2.47257 2.90828 2.95670 3.21802 3.37969 3.83096 3.87593 3.98022 4.03691 4.07545 4.15905 4.20008 4.23508 4.32904 4.33974 4.44122 4.49947 4.50599 4.62387 4.65533 4.70741 4.72229 4.79293 4.82307 4.90101 4.91718 4.97839 5.00411 5.04896 5.08139 5.17609 5.20233 5.21156 5.29621 5.35174 5.36841 5.45192 5.50468 5.61646 5.63902 5.66058 5.77339 5.89434 6.18222 6.18490 6.23750 6.33362 6.48390 6.69822 6.98347 7.50614 9.02621 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.009595 B = 0.004509 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2917.606486 B = 6208.031997 C = 8677.180985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.071 3.929 3 C -0.140 4.140 4 N -0.537 5.537 5 C 0.062 3.938 6 C -0.097 4.097 7 C 0.094 3.906 8 N -0.668 5.668 9 C 0.148 3.852 10 H 0.059 0.941 11 C 0.053 3.947 12 C -0.498 4.498 13 H 0.057 0.943 14 C -0.004 4.004 15 N -0.940 5.940 16 Si 0.958 3.042 17 H -0.277 1.277 18 H -0.286 1.286 19 H -0.266 1.266 20 C -0.103 4.103 21 C -0.129 4.129 22 C -0.119 4.119 23 C -0.131 4.131 24 C -0.119 4.119 25 C -0.136 4.136 26 C -0.129 4.129 27 C 0.062 3.938 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.055 0.945 31 H 0.034 0.966 32 H 0.059 0.941 33 H 0.053 0.947 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.025 0.975 37 H 0.065 0.935 38 H 0.059 0.941 39 H 0.053 0.947 40 H 0.337 0.663 41 H -0.010 1.010 42 H -0.015 1.015 43 H 0.259 0.741 44 H 0.113 0.887 45 H 0.141 0.859 46 H 0.148 0.852 47 H 0.142 0.858 48 H 0.115 0.885 49 H 0.060 0.940 50 H 0.064 0.936 51 H 0.089 0.911 52 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.057 10.177 -12.138 23.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.036 4.036 3 C -0.198 4.198 4 N -0.263 5.263 5 C -0.066 4.066 6 C -0.136 4.136 7 C -0.016 4.016 8 N -0.298 5.298 9 C 0.038 3.962 10 H 0.077 0.923 11 C 0.015 3.985 12 C -0.536 4.536 13 H 0.075 0.925 14 C -0.200 4.200 15 N -0.582 5.582 16 Si 0.784 3.216 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.191 1.191 20 C -0.105 4.105 21 C -0.147 4.147 22 C -0.136 4.136 23 C -0.149 4.149 24 C -0.137 4.137 25 C -0.155 4.155 26 C -0.169 4.169 27 C -0.066 4.066 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.074 0.926 31 H 0.052 0.948 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.091 0.909 35 H 0.106 0.894 36 H 0.043 0.957 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.157 0.843 41 H 0.008 0.992 42 H 0.004 0.996 43 H 0.067 0.933 44 H 0.131 0.869 45 H 0.159 0.841 46 H 0.166 0.834 47 H 0.160 0.840 48 H 0.133 0.867 49 H 0.079 0.921 50 H 0.083 0.917 51 H 0.107 0.893 52 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -16.390 10.413 -11.754 22.698 hybrid contribution 0.699 -0.903 -0.362 1.198 sum -15.691 9.510 -12.116 21.988 Atomic orbital electron populations 1.21928 0.93502 1.02098 1.02741 1.21701 0.96313 0.95497 0.90118 1.21834 1.00942 0.94522 1.02483 1.62036 1.05424 1.19644 1.39235 1.22068 0.87880 1.00673 0.96013 1.21469 0.99575 0.95118 0.97400 1.21620 0.93101 0.95834 0.91086 1.60589 1.59920 1.04651 1.04591 1.20471 0.89445 0.87676 0.98657 0.92277 1.18865 0.93414 0.93095 0.93089 1.21433 0.91840 1.32842 1.07508 0.92452 1.25856 1.03365 0.95595 0.95230 1.70106 1.32404 1.40499 1.15204 0.85553 0.79759 0.77642 0.78665 1.20250 1.21208 1.19082 1.20862 0.96553 0.96526 0.96556 1.20993 0.95518 1.00690 0.97541 1.21365 0.94595 0.97666 1.00011 1.21417 1.00995 0.95971 0.96479 1.21386 0.93970 1.00174 0.98171 1.21196 0.96363 0.97064 1.00849 1.22240 0.96369 1.00129 0.98119 1.22063 0.99860 0.88815 0.95892 0.92074 0.90802 0.92574 0.94801 0.92234 0.92833 0.90904 0.89350 0.95653 0.91653 0.92200 0.92916 0.84299 0.99181 0.99636 0.93274 0.86935 0.84112 0.83450 0.83996 0.86657 0.92103 0.91687 0.89319 0.95871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 8.65 71.98 0.62 -1.54 16 2 C 0.07 1.27 2.69 44.92 0.12 1.39 16 3 C -0.14 -2.16 9.10 71.98 0.66 -1.50 16 4 N -0.54 -11.85 4.52 -871.11 -3.94 -15.79 16 5 C 0.06 1.47 5.29 86.33 0.46 1.92 16 6 C -0.10 -2.79 5.70 30.65 0.17 -2.61 16 7 C 0.09 2.94 2.53 44.99 0.11 3.05 16 8 N -0.67 -25.24 5.76 -472.90 -2.72 -27.96 16 9 C 0.15 6.14 2.17 44.17 0.10 6.24 16 10 H 0.06 2.56 7.29 -2.39 -0.02 2.54 16 11 C 0.05 2.83 4.63 29.85 0.14 2.97 16 12 C -0.50 -28.77 8.84 25.60 0.23 -28.54 16 13 H 0.06 3.27 7.74 -2.91 -0.02 3.24 16 14 C 0.00 -0.26 5.46 84.66 0.46 0.20 16 15 N -0.94 -58.76 13.29 21.45 0.28 -58.47 16 16 Si 0.96 46.11 29.54 68.60 2.03 48.14 16 17 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 18 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 19 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 20 C -0.10 -3.65 2.95 -19.86 -0.06 -3.71 16 21 C -0.13 -4.13 8.49 22.27 0.19 -3.94 16 22 C -0.12 -3.09 10.05 22.27 0.22 -2.86 16 23 C -0.13 -3.08 10.05 22.27 0.22 -2.86 16 24 C -0.12 -3.07 10.05 22.27 0.22 -2.84 16 25 C -0.14 -4.34 9.66 22.27 0.22 -4.12 16 26 C -0.13 -3.44 4.74 30.65 0.15 -3.29 16 27 C 0.06 1.42 5.01 86.33 0.43 1.85 16 28 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.06 0.85 6.19 -2.39 -0.01 0.83 16 31 H 0.03 0.63 8.13 -2.39 -0.02 0.61 16 32 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.05 0.85 6.40 -2.39 -0.02 0.83 16 34 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.09 1.87 6.18 -2.39 -0.01 1.86 16 36 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.05 1.80 7.43 -2.39 -0.02 1.78 16 40 H 0.34 12.17 6.08 -89.70 -0.55 11.62 16 41 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 42 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 43 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 44 H 0.11 3.66 6.53 -2.91 -0.02 3.64 16 45 H 0.14 2.89 8.06 -2.91 -0.02 2.87 16 46 H 0.15 2.49 8.06 -2.92 -0.02 2.46 16 47 H 0.14 2.82 8.06 -2.91 -0.02 2.79 16 48 H 0.12 3.60 8.04 -2.91 -0.02 3.58 16 49 H 0.06 1.73 6.16 -2.39 -0.01 1.72 16 50 H 0.06 1.77 8.10 -2.39 -0.02 1.75 16 51 H 0.09 1.80 5.83 -2.39 -0.01 1.79 16 52 H 0.02 0.55 8.14 -2.39 -0.02 0.53 16 Total: -1.00 -66.18 394.48 0.64 -65.54 By element: Atomic # 1 Polarization: 28.43 SS G_CDS: 0.33 Total: 28.76 kcal Atomic # 6 Polarization: -44.87 SS G_CDS: 4.66 Total: -40.21 kcal Atomic # 7 Polarization: -95.85 SS G_CDS: -6.38 Total: -102.23 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -66.18 0.64 -65.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180686096.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.355 kcal (2) G-P(sol) polarization free energy of solvation -66.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds