Wall clock time and date at job start Tue Mar 31 2020 11:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50696 * 119.99714 * 2 1 4 4 C 1.52999 * 109.46867 * 125.00415 * 3 2 1 5 5 C 1.53002 * 109.47304 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.47645 * 179.97438 * 5 4 3 7 7 H 1.08996 * 109.46929 * 54.98926 * 6 5 4 8 8 C 1.52997 * 109.47317 * 174.99822 * 6 5 4 9 9 N 1.46906 * 109.46507 * 294.99785 * 6 5 4 10 10 C 1.46904 * 110.99716 * 154.99875 * 9 6 5 11 11 C 1.50700 * 109.47105 * 179.97438 * 10 9 6 12 12 C 1.38280 * 119.92369 * 269.73050 * 11 10 9 13 13 C 1.38110 * 120.07088 * 179.72801 * 12 11 10 14 14 C 1.38912 * 119.92155 * 0.54225 * 13 12 11 15 15 N 1.39684 * 120.07034 * 179.75358 * 14 13 12 16 16 C 1.46496 * 119.99575 * 179.97438 * 15 14 13 17 17 C 1.46495 * 120.00126 * 359.97438 * 15 14 13 18 18 C 1.50703 * 109.47142 * 90.00039 * 17 15 14 19 19 H 1.07995 * 119.99996 * 0.02562 * 18 17 15 20 20 C 1.37878 * 119.99735 * 180.02562 * 18 17 15 21 21 N 1.31511 * 120.00293 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99705 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47152 * 359.97438 * 22 20 18 24 24 H 1.48504 * 109.47385 * 119.99886 * 22 20 18 25 25 H 1.48500 * 109.46879 * 239.99814 * 22 20 18 26 26 C 1.38900 * 119.85432 * 359.72804 * 14 13 12 27 27 C 1.38105 * 119.92557 * 359.97438 * 26 14 13 28 28 H 1.07994 * 119.99766 * 179.97438 * 1 2 3 29 29 H 1.07997 * 120.00173 * 0.02562 * 1 2 3 30 30 H 1.07993 * 119.99774 * 180.02562 * 2 1 3 31 31 H 1.09001 * 109.47649 * 4.99636 * 3 2 1 32 32 H 1.09007 * 109.46917 * 244.99622 * 3 2 1 33 33 H 1.08993 * 109.47768 * 59.99528 * 4 3 2 34 34 H 1.09007 * 109.46705 * 299.99338 * 4 3 2 35 35 H 1.09001 * 109.47430 * 59.99088 * 5 4 3 36 36 H 1.09006 * 109.46455 * 299.99835 * 5 4 3 37 37 H 1.09002 * 109.47153 * 299.99641 * 8 6 5 38 38 H 1.09001 * 109.46832 * 179.97438 * 8 6 5 39 39 H 1.09004 * 109.47261 * 59.99813 * 8 6 5 40 40 H 1.00900 * 110.99634 * 278.94600 * 9 6 5 41 41 H 1.08996 * 109.46868 * 300.00084 * 10 9 6 42 42 H 1.09007 * 109.46973 * 59.99616 * 10 9 6 43 43 H 1.08000 * 119.96790 * 359.97326 * 12 11 10 44 44 H 1.07998 * 120.03748 * 180.27085 * 13 12 11 45 45 H 1.09003 * 109.47057 * 89.99990 * 16 15 14 46 46 H 1.09005 * 109.47351 * 209.99775 * 16 15 14 47 47 H 1.09000 * 109.47793 * 329.99761 * 16 15 14 48 48 H 1.09002 * 109.47255 * 210.00087 * 17 15 14 49 49 H 1.09000 * 109.47422 * 330.00390 * 17 15 14 50 50 H 0.97001 * 119.99826 * 179.97438 * 21 20 18 51 51 H 1.08002 * 120.04167 * 179.97438 * 26 14 13 52 52 H 1.08007 * 119.96545 * 179.97438 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 6 3.8005 2.6578 1.1813 6 6 4.7717 2.6861 2.3632 7 1 5.4189 1.8100 2.3226 8 6 5.6246 3.9543 2.2923 9 7 4.0125 2.6761 3.6209 10 6 4.8173 2.1204 4.7171 11 6 4.0075 2.1270 5.9881 12 6 4.0509 3.2246 6.8279 13 6 3.3057 3.2362 7.9907 14 6 2.5208 2.1389 8.3216 15 7 1.7698 2.1452 9.4994 16 6 0.9422 0.9873 9.8465 17 6 1.8099 3.3096 10.3874 18 6 0.7286 4.2814 9.9907 19 1 0.0765 4.0542 9.1604 20 6 0.5719 5.4606 10.6878 21 7 1.3657 5.7371 11.6992 22 14 -0.7690 6.6649 10.1965 23 1 -1.5203 6.1227 9.0360 24 1 -1.6974 6.8648 11.3382 25 1 -0.1547 7.9647 9.8245 26 6 2.4839 1.0357 7.4784 27 6 3.2268 1.0332 6.3142 28 1 -0.5399 -0.9353 -0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3586 2.1317 0.0895 32 1 2.6213 1.4026 -0.9314 33 1 3.7400 0.5066 1.0921 34 1 2.4772 1.2356 2.1130 35 1 3.0959 3.4846 1.2706 36 1 4.3583 2.7548 0.2498 37 1 6.1878 3.9616 1.3591 38 1 6.3161 3.9745 3.1346 39 1 4.9772 4.8303 2.3329 40 1 3.6796 3.6008 3.8495 41 1 5.1048 1.0975 4.4743 42 1 5.7128 2.7268 4.8540 43 1 4.6651 4.0755 6.5725 44 1 3.3366 4.0956 8.6440 45 1 1.5290 0.2860 10.4398 46 1 0.0787 1.3178 10.4238 47 1 0.6030 0.4965 8.9342 48 1 1.6494 2.9875 11.4163 49 1 2.7824 3.7952 10.3063 50 1 1.2556 6.5668 12.1894 51 1 1.8750 0.1808 7.7329 52 1 3.1989 0.1755 5.6583 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000182683583.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:47 Heat of formation + Delta-G solvation = 15.456573 kcal Electronic energy + Delta-G solvation = -25760.325591 eV Core-core repulsion = 22337.627875 eV Total energy + Delta-G solvation = -3422.697716 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.46582 -38.77521 -37.34163 -36.28961 -34.80711 -33.45175 -31.87110 -31.59211 -29.90571 -29.47151 -27.24298 -26.91226 -25.48206 -23.64648 -22.98076 -22.61386 -21.52647 -20.97117 -20.46638 -18.64204 -18.12253 -16.96433 -16.75388 -16.36205 -16.27742 -16.04985 -15.54721 -15.32663 -15.06088 -14.94681 -14.64906 -14.41806 -14.26789 -14.15550 -14.00580 -13.72024 -13.50701 -13.17750 -13.06261 -12.97994 -12.80608 -12.77761 -12.62742 -12.55162 -12.44764 -12.20347 -12.11595 -11.86953 -11.73506 -11.54102 -11.42346 -11.37742 -11.29903 -10.65310 -10.39506 -10.11442 -9.65053 -9.15332 -8.36577 -7.79230 -6.38101 0.72505 0.86623 1.35379 1.37007 1.47115 1.49538 2.33939 2.64156 3.04859 3.05965 3.58162 3.83603 4.06496 4.14491 4.17188 4.22654 4.26514 4.31538 4.40595 4.42852 4.52582 4.55067 4.65534 4.71347 4.72099 4.76188 4.80638 4.85480 4.87802 4.93817 5.01405 5.01842 5.04959 5.06854 5.14375 5.18887 5.19652 5.24330 5.34902 5.36297 5.51329 5.59910 5.66746 5.69349 5.70752 5.82483 5.95312 5.96958 6.06925 6.20988 6.31259 6.50609 6.56548 6.82925 6.94643 7.33954 8.82749 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.011250 B = 0.002628 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2488.216608 B =10650.792374 C =10840.721295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.157 4.157 3 C -0.094 4.094 4 C -0.101 4.101 5 C -0.101 4.101 6 C 0.084 3.916 7 H 0.080 0.920 8 C -0.180 4.180 9 N -0.684 5.684 10 C 0.122 3.878 11 C -0.157 4.157 12 C -0.068 4.068 13 C -0.216 4.216 14 C 0.212 3.788 15 N -0.633 5.633 16 C 0.098 3.902 17 C 0.267 3.733 18 C -0.540 4.540 19 H 0.048 0.952 20 C 0.012 3.988 21 N -0.927 5.927 22 Si 0.962 3.038 23 H -0.271 1.271 24 H -0.274 1.274 25 H -0.277 1.277 26 C -0.219 4.219 27 C -0.049 4.049 28 H 0.102 0.898 29 H 0.093 0.907 30 H 0.113 0.887 31 H 0.058 0.942 32 H 0.077 0.923 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.053 0.947 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.049 0.951 39 H 0.052 0.948 40 H 0.337 0.663 41 H 0.083 0.917 42 H 0.035 0.965 43 H 0.122 0.878 44 H 0.094 0.906 45 H 0.052 0.948 46 H 0.056 0.944 47 H 0.077 0.923 48 H 0.009 0.991 49 H 0.011 0.989 50 H 0.267 0.733 51 H 0.131 0.869 52 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.289 -10.141 -22.331 25.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.175 4.175 3 C -0.132 4.132 4 C -0.138 4.138 5 C -0.139 4.139 6 C -0.026 4.026 7 H 0.098 0.902 8 C -0.239 4.239 9 N -0.314 5.314 10 C -0.006 4.006 11 C -0.160 4.160 12 C -0.087 4.087 13 C -0.239 4.239 14 C 0.107 3.893 15 N -0.341 5.341 16 C -0.045 4.045 17 C 0.145 3.855 18 C -0.579 4.579 19 H 0.066 0.934 20 C -0.187 4.187 21 N -0.567 5.567 22 Si 0.786 3.214 23 H -0.196 1.196 24 H -0.199 1.199 25 H -0.202 1.202 26 C -0.241 4.241 27 C -0.068 4.068 28 H 0.120 0.880 29 H 0.111 0.889 30 H 0.131 0.869 31 H 0.076 0.924 32 H 0.096 0.904 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.155 0.845 41 H 0.101 0.899 42 H 0.053 0.947 43 H 0.140 0.860 44 H 0.112 0.888 45 H 0.071 0.929 46 H 0.074 0.926 47 H 0.096 0.904 48 H 0.027 0.973 49 H 0.029 0.971 50 H 0.076 0.924 51 H 0.148 0.852 52 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 5.889 -10.624 -22.131 25.246 hybrid contribution -0.235 1.800 0.812 1.989 sum 5.653 -8.824 -21.319 23.756 Atomic orbital electron populations 1.23977 0.96315 1.02108 1.02094 1.23138 0.96170 0.99122 0.99110 1.20804 0.98265 0.94800 0.99292 1.21344 0.97512 0.97315 0.97652 1.21548 0.97763 0.97644 0.96988 1.21634 0.93690 0.97590 0.89694 0.90195 1.22472 1.00446 0.98491 1.02466 1.60674 1.39206 1.29164 1.02397 1.20624 0.92586 1.00315 0.87099 1.19546 1.03583 0.95057 0.97766 1.20822 0.97162 0.97904 0.92861 1.20754 1.03624 0.98806 1.00721 1.18217 0.90266 0.94268 0.86529 1.46962 1.47568 1.18154 1.21414 1.21593 0.94327 0.87616 1.00940 1.18767 0.95715 0.82920 0.88103 1.21802 1.16661 1.04091 1.15314 0.93365 1.25779 0.98537 0.99617 0.94748 1.70042 1.39671 1.25746 1.21219 0.85454 0.78994 0.78598 0.78316 1.19553 1.19919 1.20210 1.20806 1.07166 0.98625 0.97533 1.20859 0.93526 0.97956 0.94447 0.87972 0.88861 0.86873 0.92371 0.90417 0.92139 0.92444 0.92820 0.90718 0.91029 0.93175 0.92841 0.84462 0.89903 0.94673 0.86031 0.88769 0.92926 0.92551 0.90436 0.97309 0.97129 0.92380 0.85165 0.84382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.35 14.32 67.77 0.97 -2.38 16 2 C -0.16 -2.49 9.52 25.64 0.24 -2.24 16 3 C -0.09 -1.42 5.66 29.85 0.17 -1.25 16 4 C -0.10 -1.61 5.08 30.59 0.16 -1.45 16 5 C -0.10 -1.49 4.89 30.59 0.15 -1.34 16 6 C 0.08 1.31 2.59 44.91 0.12 1.43 16 7 H 0.08 1.20 7.80 -2.39 -0.02 1.18 16 8 C -0.18 -2.61 9.16 71.98 0.66 -1.95 16 9 N -0.68 -13.93 5.69 -495.56 -2.82 -16.75 16 10 C 0.12 2.63 5.61 85.56 0.48 3.11 16 11 C -0.16 -4.49 5.39 -19.84 -0.11 -4.60 16 12 C -0.07 -2.31 9.69 22.25 0.22 -2.09 16 13 C -0.22 -9.13 9.21 22.40 0.21 -8.93 16 14 C 0.21 8.80 6.55 38.21 0.25 9.05 16 15 N -0.63 -28.28 2.99 -726.56 -2.17 -30.45 16 16 C 0.10 3.49 10.19 127.77 1.30 4.80 16 17 C 0.27 14.23 4.91 85.64 0.42 14.65 16 18 C -0.54 -30.76 9.39 25.60 0.24 -30.51 16 19 H 0.05 2.80 7.81 -2.91 -0.02 2.78 16 20 C 0.01 0.70 5.46 84.66 0.46 1.16 16 21 N -0.93 -54.81 13.29 21.45 0.28 -54.53 16 22 Si 0.96 44.51 29.54 68.60 2.03 46.53 16 23 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 24 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 25 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 26 C -0.22 -7.40 9.21 22.40 0.21 -7.19 16 27 C -0.05 -1.42 9.69 22.25 0.22 -1.20 16 28 H 0.10 1.43 8.06 -2.91 -0.02 1.41 16 29 H 0.09 1.50 7.84 -2.91 -0.02 1.48 16 30 H 0.11 1.57 8.06 -2.91 -0.02 1.55 16 31 H 0.06 0.94 7.79 -2.39 -0.02 0.92 16 32 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 33 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.06 1.20 7.75 -2.38 -0.02 1.18 16 35 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 37 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.05 0.78 7.45 -2.39 -0.02 0.76 16 39 H 0.05 0.82 8.13 -2.38 -0.02 0.80 16 40 H 0.34 7.53 8.46 -89.69 -0.76 6.77 16 41 H 0.08 1.61 8.00 -2.39 -0.02 1.59 16 42 H 0.04 0.73 7.38 -2.38 -0.02 0.71 16 43 H 0.12 3.62 8.06 -2.91 -0.02 3.60 16 44 H 0.09 4.59 6.14 -2.91 -0.02 4.57 16 45 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 46 H 0.06 2.08 8.07 -2.38 -0.02 2.06 16 47 H 0.08 2.36 6.20 -2.39 -0.01 2.35 16 48 H 0.01 0.50 8.07 -2.39 -0.02 0.48 16 49 H 0.01 0.62 6.20 -2.39 -0.01 0.60 16 50 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 51 H 0.13 3.87 6.14 -2.91 -0.02 3.85 16 52 H 0.14 3.24 8.06 -2.91 -0.02 3.21 16 Total: -1.00 -62.90 417.98 3.77 -59.13 By element: Atomic # 1 Polarization: 26.91 SS G_CDS: 0.10 Total: 27.01 kcal Atomic # 6 Polarization: -37.30 SS G_CDS: 6.36 Total: -30.94 kcal Atomic # 7 Polarization: -97.02 SS G_CDS: -4.71 Total: -101.73 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Total: -62.90 3.77 -59.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182683583.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.586 kcal (2) G-P(sol) polarization free energy of solvation -62.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds