Wall clock time and date at job start Tue Mar 31 2020 11:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47050 * 2 1 4 4 H 1.09004 * 109.47109 * 54.99970 * 3 2 1 5 5 C 1.52994 * 109.47302 * 294.99464 * 3 2 1 6 6 C 1.52998 * 109.47302 * 179.97438 * 5 3 2 7 7 C 1.52996 * 109.47268 * 60.00032 * 6 5 3 8 8 C 1.52998 * 109.47266 * 300.00276 * 7 6 5 9 9 H 1.08996 * 109.46935 * 299.99641 * 8 7 6 10 10 C 1.53003 * 109.47206 * 179.97438 * 8 7 6 11 11 N 1.46906 * 109.46616 * 65.08943 * 10 8 7 12 12 C 1.46901 * 110.99376 * 200.34944 * 11 10 8 13 13 C 1.50694 * 109.47548 * 63.40255 * 12 11 10 14 14 H 1.07999 * 119.99919 * 5.24325 * 13 12 11 15 15 C 1.37876 * 120.00302 * 185.24925 * 13 12 11 16 16 N 1.31514 * 119.99880 * 354.90028 * 15 13 12 17 17 Si 1.86802 * 120.00269 * 174.89896 * 15 13 12 18 18 H 1.48499 * 109.47035 * 94.99569 * 17 15 13 19 19 H 1.48504 * 109.47129 * 214.99664 * 17 15 13 20 20 H 1.48494 * 109.46842 * 334.99389 * 17 15 13 21 21 C 1.46891 * 110.99915 * 76.39666 * 11 10 8 22 22 C 1.50702 * 109.47264 * 189.99879 * 21 11 10 23 23 C 1.38671 * 120.41766 * 270.02357 * 22 21 11 24 24 C 1.38628 * 118.42440 * 179.97438 * 23 22 21 25 25 C 1.38228 * 119.16126 * 0.02562 * 24 23 22 26 26 N 1.31865 * 120.76164 * 359.97252 * 25 24 23 27 27 C 1.31886 * 121.72064 * 0.02890 * 26 25 24 28 28 C 1.53004 * 109.46822 * 174.99468 * 3 2 1 29 29 H 1.09001 * 109.46447 * 60.00441 * 1 2 3 30 30 H 1.09001 * 109.47048 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47074 * 300.00190 * 1 2 3 32 32 H 1.08998 * 109.47546 * 239.99686 * 2 1 3 33 33 H 1.08999 * 109.47058 * 119.99983 * 2 1 3 34 34 H 1.08996 * 109.47169 * 300.00246 * 5 3 2 35 35 H 1.09007 * 109.46554 * 60.00200 * 5 3 2 36 36 H 1.09003 * 109.47517 * 180.02562 * 6 5 3 37 37 H 1.09004 * 109.47109 * 300.00506 * 6 5 3 38 38 H 1.09000 * 109.47264 * 179.97438 * 7 6 5 39 39 H 1.09004 * 109.46668 * 60.00204 * 7 6 5 40 40 H 1.08997 * 109.47345 * 305.08901 * 10 8 7 41 41 H 1.08997 * 109.46990 * 185.08272 * 10 8 7 42 42 H 1.09001 * 109.46619 * 183.39867 * 12 11 10 43 43 H 1.08999 * 109.47238 * 303.39170 * 12 11 10 44 44 H 0.96999 * 120.00011 * 180.02562 * 16 15 13 45 45 H 1.09001 * 109.47405 * 69.99979 * 21 11 10 46 46 H 1.09001 * 109.47625 * 309.99637 * 21 11 10 47 47 H 1.07997 * 120.79142 * 359.97438 * 23 22 21 48 48 H 1.07995 * 120.42504 * 180.29327 * 24 23 22 49 49 H 1.07994 * 119.62254 * 180.02562 * 25 24 23 50 50 H 1.08005 * 119.60836 * 179.97438 * 27 26 25 51 51 H 1.09004 * 109.46869 * 60.00354 * 28 3 2 52 52 H 1.08998 * 109.47453 * 299.99934 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6354 2.1265 -1.3073 6 6 2.1448 3.5692 -1.3071 7 6 3.6696 3.5716 -1.1809 8 6 4.0743 2.8876 0.1264 9 1 3.6393 3.4264 0.9681 10 6 5.5991 2.8895 0.2523 11 7 6.0785 4.2727 0.3749 12 6 7.5003 4.3705 0.0186 13 6 7.6822 3.9963 -1.4298 14 1 6.8197 3.7964 -2.0483 15 6 8.9496 3.9091 -1.9654 16 7 9.9940 4.2491 -1.2421 17 14 9.1835 3.3079 -3.7185 18 1 9.2603 4.4734 -4.6354 19 1 10.4410 2.5230 -3.8091 20 1 8.0352 2.4491 -4.1046 21 6 5.8372 4.7956 1.7262 22 6 6.1110 6.2774 1.7478 23 6 7.3795 6.7528 2.0442 24 6 7.5853 8.1237 2.0520 25 6 6.5266 8.9653 1.7665 26 7 5.3333 8.4778 1.4889 27 6 5.1012 7.1796 1.4724 28 6 3.5649 1.4443 0.1259 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 2.0700 1.5875 -2.1491 35 1 0.5490 2.1252 -1.3969 36 1 1.8562 4.0567 -2.2383 37 1 1.7098 4.1080 -0.4652 38 1 4.0325 4.5994 -1.1812 39 1 4.1046 3.0328 -2.0227 40 1 6.0374 2.4302 -0.6337 41 1 5.8914 2.3240 1.1370 42 1 7.8447 5.3927 0.1757 43 1 8.0793 3.6918 0.6448 44 1 10.8857 4.1881 -1.6190 45 1 6.4977 4.2938 2.4333 46 1 4.7996 4.6138 2.0063 47 1 8.1879 6.0712 2.2639 48 1 8.5614 8.5289 2.2740 49 1 6.6786 10.0345 1.7701 50 1 4.1104 6.8175 1.2410 51 1 3.9995 0.9052 -0.7160 52 1 3.8532 0.9570 1.0573 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000182944898.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:39 Heat of formation + Delta-G solvation = -0.770962 kcal Electronic energy + Delta-G solvation = -27374.765154 eV Core-core repulsion = 23951.363759 eV Total energy + Delta-G solvation = -3423.401395 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.83493 -38.99117 -36.70562 -33.89818 -32.77873 -32.14215 -31.38093 -30.57964 -28.94370 -27.39340 -25.76599 -24.17979 -23.44765 -23.02324 -21.89600 -21.68465 -20.49109 -19.59689 -19.18587 -16.68737 -16.45133 -15.83849 -15.32301 -15.24796 -14.81406 -14.55830 -14.40368 -14.13211 -13.80004 -13.66440 -13.38635 -13.20622 -13.07012 -12.77806 -12.62552 -12.41063 -12.26262 -11.97993 -11.72915 -11.59417 -11.33682 -11.24740 -11.04856 -10.93678 -10.87958 -10.70042 -10.65178 -10.59282 -10.40900 -10.00005 -9.93172 -9.65358 -9.52912 -9.29733 -9.24059 -9.03144 -8.56289 -8.41428 -7.25499 -6.05708 -4.04942 1.52002 1.71240 3.29540 3.36450 3.39875 4.17006 4.41767 4.68295 4.80321 4.80920 4.92964 5.06714 5.15695 5.18900 5.30256 5.31772 5.34297 5.38386 5.41134 5.47389 5.48004 5.62701 5.68827 5.71227 5.79719 5.83249 5.84840 5.89359 5.92616 5.96305 6.02049 6.10209 6.13957 6.17641 6.22564 6.23302 6.31202 6.38959 6.48408 6.52583 6.53638 6.66655 6.68484 6.73661 6.94838 6.98410 7.09760 7.29971 7.32194 7.79709 8.06605 8.17325 8.34173 8.52473 9.02787 9.58732 11.05361 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.008526 B = 0.004699 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3283.154191 B = 5957.631482 C = 8340.260154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.084 4.084 4 H 0.065 0.935 5 C -0.113 4.113 6 C -0.120 4.120 7 C -0.103 4.103 8 C -0.077 4.077 9 H 0.060 0.940 10 C 0.066 3.934 11 N -0.527 5.527 12 C 0.189 3.811 13 C -0.505 4.505 14 H 0.064 0.936 15 C 0.057 3.943 16 N -0.897 5.897 17 Si 0.892 3.108 18 H -0.282 1.282 19 H -0.287 1.287 20 H -0.273 1.273 21 C 0.094 3.906 22 C -0.109 4.109 23 C -0.058 4.058 24 C -0.174 4.174 25 C 0.085 3.915 26 N -0.492 5.492 27 C 0.111 3.889 28 C -0.109 4.109 29 H 0.056 0.944 30 H 0.048 0.952 31 H 0.051 0.949 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.077 0.923 39 H 0.057 0.943 40 H 0.089 0.911 41 H 0.018 0.982 42 H 0.035 0.965 43 H -0.011 1.011 44 H 0.260 0.740 45 H 0.032 0.968 46 H 0.073 0.927 47 H 0.132 0.868 48 H 0.129 0.871 49 H 0.148 0.852 50 H 0.150 0.850 51 H 0.061 0.939 52 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.544 -2.176 6.182 15.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.103 4.103 4 H 0.084 0.916 5 C -0.151 4.151 6 C -0.157 4.157 7 C -0.140 4.140 8 C -0.096 4.096 9 H 0.078 0.922 10 C -0.062 4.062 11 N -0.251 5.251 12 C 0.064 3.936 13 C -0.543 4.543 14 H 0.082 0.918 15 C -0.144 4.144 16 N -0.537 5.537 17 Si 0.720 3.280 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.198 1.198 21 C -0.035 4.035 22 C -0.111 4.111 23 C -0.085 4.085 24 C -0.194 4.194 25 C -0.072 4.072 26 N -0.201 5.201 27 C -0.046 4.046 28 C -0.147 4.147 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.095 0.905 39 H 0.075 0.925 40 H 0.107 0.893 41 H 0.036 0.964 42 H 0.053 0.947 43 H 0.007 0.993 44 H 0.070 0.930 45 H 0.050 0.950 46 H 0.091 0.909 47 H 0.150 0.850 48 H 0.147 0.853 49 H 0.165 0.835 50 H 0.167 0.833 51 H 0.080 0.920 52 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -14.287 -1.309 5.650 15.419 hybrid contribution 1.661 -1.398 -0.272 2.188 sum -12.625 -2.707 5.378 13.987 Atomic orbital electron populations 1.21818 0.96294 1.01099 1.01788 1.21581 0.95499 0.96943 1.01774 1.21152 0.95908 0.95142 0.98057 0.91624 1.21623 0.99740 0.96340 0.97356 1.21574 0.97266 0.95907 1.00985 1.21427 0.93390 1.02251 0.96947 1.21134 0.95742 0.94602 0.98135 0.92183 1.22073 0.93492 0.89582 1.01087 1.62111 1.22778 1.19336 1.20838 1.19818 0.80783 0.96976 0.96025 1.21147 0.92076 1.45904 0.95206 0.91753 1.24953 0.96025 0.95664 0.97781 1.69958 0.98476 1.48304 1.36960 0.86569 0.77568 0.78894 0.84937 1.20773 1.21313 1.19769 1.20958 1.00346 0.89866 0.92309 1.20791 0.94243 0.97188 0.98884 1.21570 0.96601 0.95516 0.94792 1.22055 1.00399 0.94343 1.02573 1.22590 0.88505 0.99957 0.96191 1.67634 1.23485 1.15649 1.13339 1.22496 0.99159 0.87939 0.95031 1.21632 0.94374 0.97247 1.01480 0.92546 0.93248 0.92969 0.92140 0.92287 0.92262 0.92617 0.92664 0.92612 0.90460 0.92468 0.89262 0.96407 0.94726 0.99312 0.93029 0.95021 0.90902 0.85038 0.85301 0.83489 0.83280 0.91978 0.92624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.67 37.16 0.36 -0.95 16 2 C -0.12 -1.17 5.40 -26.73 -0.14 -1.31 16 3 C -0.08 -0.92 2.19 -90.62 -0.20 -1.12 16 4 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 5 C -0.11 -1.26 4.96 -26.74 -0.13 -1.40 16 6 C -0.12 -1.49 5.92 -26.73 -0.16 -1.65 16 7 C -0.10 -1.55 5.09 -26.73 -0.14 -1.69 16 8 C -0.08 -1.12 2.25 -90.59 -0.20 -1.33 16 9 H 0.06 0.85 6.70 -51.93 -0.35 0.50 16 10 C 0.07 1.19 4.21 -3.82 -0.02 1.17 16 11 N -0.53 -10.44 3.89 -237.52 -0.92 -11.36 16 12 C 0.19 4.65 4.48 -4.98 -0.02 4.63 16 13 C -0.50 -13.65 8.07 -34.44 -0.28 -13.93 16 14 H 0.06 1.74 7.36 -52.49 -0.39 1.35 16 15 C 0.06 1.58 5.45 -17.82 -0.10 1.48 16 16 N -0.90 -26.05 13.29 55.43 0.74 -25.31 16 17 Si 0.89 21.41 29.54 -169.99 -5.02 16.38 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 21 C 0.09 1.59 4.96 -4.98 -0.02 1.56 16 22 C -0.11 -1.86 4.91 -104.48 -0.51 -2.38 16 23 C -0.06 -1.00 8.04 -39.28 -0.32 -1.31 16 24 C -0.17 -2.66 10.11 -39.44 -0.40 -3.06 16 25 C 0.08 1.28 11.18 -17.54 -0.20 1.09 16 26 N -0.49 -8.32 10.36 -13.25 -0.14 -8.46 16 27 C 0.11 1.84 10.86 -17.55 -0.19 1.65 16 28 C -0.11 -1.39 4.49 -26.70 -0.12 -1.51 16 29 H 0.06 0.48 6.56 -51.93 -0.34 0.14 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.56 6.57 -51.93 -0.34 0.22 16 36 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.08 1.34 7.76 -51.93 -0.40 0.94 16 39 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.09 1.85 6.47 -51.93 -0.34 1.51 16 41 H 0.02 0.31 7.99 -51.93 -0.41 -0.10 16 42 H 0.03 0.91 5.67 -51.93 -0.29 0.62 16 43 H -0.01 -0.29 8.14 -51.93 -0.42 -0.72 16 44 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 45 H 0.03 0.54 8.07 -51.93 -0.42 0.12 16 46 H 0.07 1.07 6.56 -51.93 -0.34 0.73 16 47 H 0.13 2.28 7.95 -52.49 -0.42 1.86 16 48 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 49 H 0.15 1.75 8.06 -52.49 -0.42 1.33 16 50 H 0.15 2.19 8.06 -52.48 -0.42 1.77 16 51 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 52 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 398.51 15.07 6.01 6.01 Total: -1.00 -29.06 398.51 -11.65 -40.71 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -9.52 Total: 2.07 kcal Atomic # 6 Polarization: -17.25 SS G_CDS: -2.79 Total: -20.04 kcal Atomic # 7 Polarization: -44.81 SS G_CDS: -0.33 Total: -45.13 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -29.06 -11.65 -40.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182944898.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.935 kcal (2) G-P(sol) polarization free energy of solvation -29.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds