Wall clock time and date at job start Tue Mar 31 2020 11:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47050 * 2 1 4 4 H 1.09004 * 109.47109 * 54.99970 * 3 2 1 5 5 C 1.52994 * 109.47302 * 294.99464 * 3 2 1 6 6 C 1.52998 * 109.47302 * 179.97438 * 5 3 2 7 7 C 1.52996 * 109.47268 * 60.00032 * 6 5 3 8 8 C 1.52998 * 109.47266 * 300.00276 * 7 6 5 9 9 H 1.08996 * 109.46935 * 299.99641 * 8 7 6 10 10 C 1.53003 * 109.47206 * 179.97438 * 8 7 6 11 11 N 1.46906 * 109.46616 * 65.08943 * 10 8 7 12 12 C 1.46901 * 110.99376 * 200.34944 * 11 10 8 13 13 C 1.50694 * 109.47548 * 63.40255 * 12 11 10 14 14 H 1.07999 * 119.99919 * 5.24325 * 13 12 11 15 15 C 1.37876 * 120.00302 * 185.24925 * 13 12 11 16 16 N 1.31514 * 119.99880 * 354.90028 * 15 13 12 17 17 Si 1.86802 * 120.00269 * 174.89896 * 15 13 12 18 18 H 1.48499 * 109.47035 * 94.99569 * 17 15 13 19 19 H 1.48504 * 109.47129 * 214.99664 * 17 15 13 20 20 H 1.48494 * 109.46842 * 334.99389 * 17 15 13 21 21 C 1.46891 * 110.99915 * 76.39666 * 11 10 8 22 22 C 1.50702 * 109.47264 * 189.99879 * 21 11 10 23 23 C 1.38671 * 120.41766 * 270.02357 * 22 21 11 24 24 C 1.38628 * 118.42440 * 179.97438 * 23 22 21 25 25 C 1.38228 * 119.16126 * 0.02562 * 24 23 22 26 26 N 1.31865 * 120.76164 * 359.97252 * 25 24 23 27 27 C 1.31886 * 121.72064 * 0.02890 * 26 25 24 28 28 C 1.53004 * 109.46822 * 174.99468 * 3 2 1 29 29 H 1.09001 * 109.46447 * 60.00441 * 1 2 3 30 30 H 1.09001 * 109.47048 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47074 * 300.00190 * 1 2 3 32 32 H 1.08998 * 109.47546 * 239.99686 * 2 1 3 33 33 H 1.08999 * 109.47058 * 119.99983 * 2 1 3 34 34 H 1.08996 * 109.47169 * 300.00246 * 5 3 2 35 35 H 1.09007 * 109.46554 * 60.00200 * 5 3 2 36 36 H 1.09003 * 109.47517 * 180.02562 * 6 5 3 37 37 H 1.09004 * 109.47109 * 300.00506 * 6 5 3 38 38 H 1.09000 * 109.47264 * 179.97438 * 7 6 5 39 39 H 1.09004 * 109.46668 * 60.00204 * 7 6 5 40 40 H 1.08997 * 109.47345 * 305.08901 * 10 8 7 41 41 H 1.08997 * 109.46990 * 185.08272 * 10 8 7 42 42 H 1.09001 * 109.46619 * 183.39867 * 12 11 10 43 43 H 1.08999 * 109.47238 * 303.39170 * 12 11 10 44 44 H 0.96999 * 120.00011 * 180.02562 * 16 15 13 45 45 H 1.09001 * 109.47405 * 69.99979 * 21 11 10 46 46 H 1.09001 * 109.47625 * 309.99637 * 21 11 10 47 47 H 1.07997 * 120.79142 * 359.97438 * 23 22 21 48 48 H 1.07995 * 120.42504 * 180.29327 * 24 23 22 49 49 H 1.07994 * 119.62254 * 180.02562 * 25 24 23 50 50 H 1.08005 * 119.60836 * 179.97438 * 27 26 25 51 51 H 1.09004 * 109.46869 * 60.00354 * 28 3 2 52 52 H 1.08998 * 109.47453 * 299.99934 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6354 2.1265 -1.3073 6 6 2.1448 3.5692 -1.3071 7 6 3.6696 3.5716 -1.1809 8 6 4.0743 2.8876 0.1264 9 1 3.6393 3.4264 0.9681 10 6 5.5991 2.8895 0.2523 11 7 6.0785 4.2727 0.3749 12 6 7.5003 4.3705 0.0186 13 6 7.6822 3.9963 -1.4298 14 1 6.8197 3.7964 -2.0483 15 6 8.9496 3.9091 -1.9654 16 7 9.9940 4.2491 -1.2421 17 14 9.1835 3.3079 -3.7185 18 1 9.2603 4.4734 -4.6354 19 1 10.4410 2.5230 -3.8091 20 1 8.0352 2.4491 -4.1046 21 6 5.8372 4.7956 1.7262 22 6 6.1110 6.2774 1.7478 23 6 7.3795 6.7528 2.0442 24 6 7.5853 8.1237 2.0520 25 6 6.5266 8.9653 1.7665 26 7 5.3333 8.4778 1.4889 27 6 5.1012 7.1796 1.4724 28 6 3.5649 1.4443 0.1259 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 2.0700 1.5875 -2.1491 35 1 0.5490 2.1252 -1.3969 36 1 1.8562 4.0567 -2.2383 37 1 1.7098 4.1080 -0.4652 38 1 4.0325 4.5994 -1.1812 39 1 4.1046 3.0328 -2.0227 40 1 6.0374 2.4302 -0.6337 41 1 5.8914 2.3240 1.1370 42 1 7.8447 5.3927 0.1757 43 1 8.0793 3.6918 0.6448 44 1 10.8857 4.1881 -1.6190 45 1 6.4977 4.2938 2.4333 46 1 4.7996 4.6138 2.0063 47 1 8.1879 6.0712 2.2639 48 1 8.5614 8.5289 2.2740 49 1 6.6786 10.0345 1.7701 50 1 4.1104 6.8175 1.2410 51 1 3.9995 0.9052 -0.7160 52 1 3.8532 0.9570 1.0573 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000182944898.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:38 Heat of formation + Delta-G solvation = -14.501013 kcal Electronic energy + Delta-G solvation = -27375.360534 eV Core-core repulsion = 23951.363759 eV Total energy + Delta-G solvation = -3423.996775 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.12940 -40.10745 -38.14371 -35.01660 -34.69126 -33.44462 -32.61310 -31.89282 -29.94415 -29.17800 -27.11579 -25.78106 -24.58370 -24.23143 -23.35582 -22.77145 -21.87536 -20.59434 -20.49285 -18.50559 -17.92393 -17.24998 -16.80112 -16.43027 -16.27839 -15.84642 -15.66739 -15.33773 -15.19311 -14.71452 -14.63210 -14.39110 -14.31307 -14.06471 -13.95078 -13.80981 -13.65260 -13.29585 -13.22141 -12.82826 -12.73590 -12.53655 -12.51612 -12.28423 -12.20364 -12.13944 -11.83823 -11.78439 -11.66893 -11.44087 -11.31085 -11.09644 -10.71219 -10.68158 -10.66774 -10.47717 -10.35493 -9.85045 -8.92964 -8.20270 -6.26368 0.25867 0.40218 1.37334 1.38043 1.49223 2.38627 2.87909 3.13222 3.42002 3.62780 3.83059 3.90542 3.92355 3.96386 4.01664 4.14814 4.18315 4.22730 4.38262 4.45800 4.48552 4.50877 4.57256 4.65642 4.67790 4.72690 4.80048 4.85918 4.87640 4.89310 4.94098 4.96644 5.04249 5.10463 5.14647 5.22937 5.24885 5.28523 5.30208 5.34999 5.39774 5.43497 5.44922 5.49291 5.56864 5.64789 5.68033 5.68985 5.78520 5.85206 6.10200 6.38366 6.67377 6.90222 7.07907 7.41766 8.90723 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.008526 B = 0.004699 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3283.154191 B = 5957.631482 C = 8340.260154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.119 4.119 3 C -0.078 4.078 4 H 0.073 0.927 5 C -0.110 4.110 6 C -0.114 4.114 7 C -0.098 4.098 8 C -0.065 4.065 9 H 0.073 0.927 10 C 0.069 3.931 11 N -0.527 5.527 12 C 0.208 3.792 13 C -0.515 4.515 14 H 0.059 0.941 15 C 0.006 3.994 16 N -0.930 5.930 17 Si 0.955 3.045 18 H -0.277 1.277 19 H -0.282 1.282 20 H -0.266 1.266 21 C 0.098 3.902 22 C -0.124 4.124 23 C -0.079 4.079 24 C -0.175 4.175 25 C 0.085 3.915 26 N -0.507 5.507 27 C 0.106 3.894 28 C -0.106 4.106 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.050 0.950 35 H 0.074 0.926 36 H 0.058 0.942 37 H 0.066 0.934 38 H 0.052 0.948 39 H 0.035 0.965 40 H 0.057 0.943 41 H 0.019 0.981 42 H 0.015 0.985 43 H -0.043 1.043 44 H 0.262 0.738 45 H 0.026 0.974 46 H 0.101 0.899 47 H 0.118 0.882 48 H 0.154 0.846 49 H 0.183 0.817 50 H 0.166 0.834 51 H 0.049 0.951 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.730 -2.067 6.175 17.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.156 4.156 3 C -0.097 4.097 4 H 0.092 0.908 5 C -0.147 4.147 6 C -0.151 4.151 7 C -0.136 4.136 8 C -0.084 4.084 9 H 0.091 0.909 10 C -0.059 4.059 11 N -0.251 5.251 12 C 0.082 3.918 13 C -0.554 4.554 14 H 0.077 0.923 15 C -0.192 4.192 16 N -0.571 5.571 17 Si 0.781 3.219 18 H -0.203 1.203 19 H -0.207 1.207 20 H -0.190 1.190 21 C -0.030 4.030 22 C -0.126 4.126 23 C -0.106 4.106 24 C -0.194 4.194 25 C -0.072 4.072 26 N -0.216 5.216 27 C -0.050 4.050 28 C -0.144 4.144 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.069 0.931 35 H 0.093 0.907 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.070 0.930 39 H 0.054 0.946 40 H 0.075 0.925 41 H 0.037 0.963 42 H 0.033 0.967 43 H -0.026 1.026 44 H 0.071 0.929 45 H 0.045 0.955 46 H 0.119 0.881 47 H 0.136 0.864 48 H 0.171 0.829 49 H 0.199 0.801 50 H 0.183 0.817 51 H 0.068 0.932 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.496 -1.207 5.648 17.478 hybrid contribution 2.377 -1.383 -0.225 2.759 sum -14.119 -2.590 5.423 15.345 Atomic orbital electron populations 1.21799 0.95106 1.01772 1.02098 1.21552 0.96493 0.95840 1.01739 1.21108 0.94139 0.96230 0.98184 0.90821 1.21606 1.00783 0.95159 0.97193 1.21519 0.94766 0.97158 1.01660 1.21338 0.95613 1.00282 0.96383 1.21036 0.92801 0.96266 0.98300 0.90854 1.22068 0.95935 0.88357 0.99561 1.62045 1.19438 1.20523 1.23077 1.19415 0.83260 0.94721 0.94448 1.21433 0.92046 1.45525 0.96354 0.92251 1.25757 0.95800 0.95800 1.01812 1.70073 0.98875 1.49400 1.38773 0.85576 0.77722 0.78498 0.80123 1.20332 1.20746 1.18989 1.21003 1.01779 0.89901 0.90356 1.20833 0.94621 0.97219 0.99942 1.21676 0.96508 0.96568 0.95804 1.22354 1.01795 0.93513 1.01762 1.23174 0.87743 1.01614 0.94661 1.67700 1.24402 1.15660 1.13856 1.22743 0.99681 0.87938 0.94664 1.21602 0.95963 0.95470 1.01356 0.92363 0.92490 0.92488 0.92600 0.92005 0.93070 0.90725 0.92354 0.91486 0.92962 0.94618 0.92491 0.96254 0.96658 1.02576 0.92920 0.95535 0.88098 0.86392 0.82871 0.80052 0.81655 0.93193 0.91950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 9.67 71.98 0.70 -1.45 16 2 C -0.12 -2.03 5.40 30.59 0.17 -1.86 16 3 C -0.08 -1.53 2.19 -10.80 -0.02 -1.55 16 4 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 5 C -0.11 -2.22 4.96 30.59 0.15 -2.06 16 6 C -0.11 -2.62 5.92 30.59 0.18 -2.44 16 7 C -0.10 -2.97 5.09 30.59 0.16 -2.82 16 8 C -0.07 -1.86 2.25 -10.77 -0.02 -1.89 16 9 H 0.07 1.93 6.70 -2.39 -0.02 1.91 16 10 C 0.07 2.55 4.21 86.30 0.36 2.91 16 11 N -0.53 -21.54 3.89 -905.38 -3.52 -25.07 16 12 C 0.21 10.73 4.48 85.55 0.38 11.12 16 13 C -0.52 -28.86 8.07 25.60 0.21 -28.65 16 14 H 0.06 3.31 7.36 -2.91 -0.02 3.29 16 15 C 0.01 0.36 5.45 84.65 0.46 0.82 16 16 N -0.93 -55.51 13.29 21.45 0.29 -55.23 16 17 Si 0.96 44.62 29.54 68.60 2.03 46.65 16 18 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 19 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 20 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 21 C 0.10 3.34 4.96 85.56 0.42 3.76 16 22 C -0.12 -4.27 4.91 -19.77 -0.10 -4.37 16 23 C -0.08 -2.76 8.04 22.47 0.18 -2.58 16 24 C -0.17 -5.21 10.11 22.36 0.23 -4.99 16 25 C 0.08 2.43 11.18 84.69 0.95 3.38 16 26 N -0.51 -16.45 10.36 -195.84 -2.03 -18.48 16 27 C 0.11 3.44 10.86 84.67 0.92 4.36 16 28 C -0.11 -2.57 4.49 30.62 0.14 -2.44 16 29 H 0.06 0.81 6.56 -2.39 -0.02 0.79 16 30 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.06 0.76 8.14 -2.39 -0.02 0.75 16 32 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.07 1.26 6.57 -2.38 -0.02 1.25 16 36 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 38 H 0.05 1.83 7.76 -2.39 -0.02 1.81 16 39 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 40 H 0.06 2.47 6.47 -2.39 -0.02 2.46 16 41 H 0.02 0.70 7.99 -2.39 -0.02 0.68 16 42 H 0.02 0.85 5.67 -2.39 -0.01 0.84 16 43 H -0.04 -2.48 8.14 -2.39 -0.02 -2.50 16 44 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 45 H 0.03 0.93 8.07 -2.39 -0.02 0.91 16 46 H 0.10 2.84 6.56 -2.39 -0.02 2.83 16 47 H 0.12 4.35 7.95 -2.91 -0.02 4.33 16 48 H 0.15 3.70 8.06 -2.91 -0.02 3.68 16 49 H 0.18 3.80 8.06 -2.91 -0.02 3.77 16 50 H 0.17 4.63 8.06 -2.91 -0.02 4.60 16 51 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 52 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -64.17 398.51 3.07 -61.10 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: 0.85 Total: 21.77 kcal Atomic # 6 Polarization: -36.21 SS G_CDS: 5.46 Total: -30.75 kcal Atomic # 7 Polarization: -93.50 SS G_CDS: -5.27 Total: -98.77 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -64.17 3.07 -61.10 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182944898.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.603 kcal (2) G-P(sol) polarization free energy of solvation -64.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds