Wall clock time and date at job start Tue Mar 31 2020 11:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46899 * 2 1 4 4 H 1.09006 * 109.47391 * 304.99907 * 3 2 1 5 5 C 1.53000 * 109.47547 * 65.00009 * 3 2 1 6 6 C 1.52992 * 109.47265 * 180.02562 * 5 3 2 7 7 C 1.53001 * 109.47156 * 299.99412 * 6 5 3 8 8 C 1.53004 * 109.46855 * 60.00314 * 7 6 5 9 9 H 1.08997 * 109.47262 * 180.02562 * 8 7 6 10 10 C 1.53006 * 109.46932 * 59.99969 * 8 7 6 11 11 N 1.46901 * 109.47179 * 66.03193 * 10 8 7 12 12 C 1.46895 * 111.00241 * 196.51503 * 11 10 8 13 13 C 1.50699 * 109.47127 * 67.55554 * 12 11 10 14 14 H 1.08003 * 119.99908 * 4.73541 * 13 12 11 15 15 C 1.37870 * 120.00075 * 184.72516 * 13 12 11 16 16 N 1.31516 * 120.00119 * 0.02562 * 15 13 12 17 17 Si 1.86808 * 120.00312 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.46706 * 60.00326 * 17 15 13 19 19 H 1.48495 * 109.47168 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.46867 * 300.00590 * 17 15 13 21 21 C 1.46898 * 111.00078 * 72.55638 * 11 10 8 22 22 C 1.50703 * 109.47187 * 196.43865 * 21 11 10 23 23 C 1.38672 * 120.42022 * 272.40239 * 22 21 11 24 24 C 1.38619 * 118.42050 * 179.78402 * 23 22 21 25 25 C 1.38228 * 119.15964 * 0.51390 * 24 23 22 26 26 N 1.31851 * 120.76573 * 359.72811 * 25 24 23 27 27 C 1.31881 * 121.72528 * 0.02562 * 26 25 24 28 28 C 1.52999 * 109.46984 * 184.99940 * 3 2 1 29 29 H 1.09000 * 109.47304 * 300.00400 * 1 2 3 30 30 H 1.09004 * 109.46931 * 60.00596 * 1 2 3 31 31 H 1.08998 * 109.46943 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47121 * 240.00098 * 2 1 3 33 33 H 1.08998 * 109.46906 * 119.99857 * 2 1 3 34 34 H 1.09008 * 109.46516 * 299.99936 * 5 3 2 35 35 H 1.08998 * 109.47139 * 59.99662 * 5 3 2 36 36 H 1.09006 * 109.47035 * 179.97438 * 6 5 3 37 37 H 1.09006 * 109.47673 * 59.99897 * 6 5 3 38 38 H 1.08998 * 109.47159 * 300.00457 * 7 6 5 39 39 H 1.08999 * 109.47580 * 179.97438 * 7 6 5 40 40 H 1.08997 * 109.46714 * 186.02644 * 10 8 7 41 41 H 1.08997 * 109.47020 * 306.03008 * 10 8 7 42 42 H 1.09001 * 109.47526 * 187.56297 * 12 11 10 43 43 H 1.09008 * 109.46858 * 307.56371 * 12 11 10 44 44 H 0.97006 * 119.99836 * 180.02562 * 16 15 13 45 45 H 1.09000 * 109.47355 * 316.44240 * 21 11 10 46 46 H 1.09001 * 109.47045 * 76.44388 * 21 11 10 47 47 H 1.08006 * 120.78867 * 0.02606 * 23 22 21 48 48 H 1.08003 * 120.42337 * 180.22329 * 24 23 22 49 49 H 1.08010 * 119.61663 * 179.70495 * 25 24 23 50 50 H 1.08001 * 119.62006 * 180.02562 * 27 26 25 51 51 H 1.08998 * 109.46963 * 299.99886 * 28 3 2 52 52 H 1.08997 * 109.47465 * 59.99773 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8419 5 6 1.6352 2.1266 1.3073 6 6 2.1446 3.5692 1.3070 7 6 3.6695 3.5717 1.1811 8 6 4.0743 2.8876 -0.1263 9 1 5.1606 2.8889 -0.2158 10 6 3.4637 3.6439 -1.3079 11 7 4.0614 4.9830 -1.3938 12 6 3.2508 5.8681 -2.2408 13 6 1.9324 6.1419 -1.5641 14 1 1.7480 5.7658 -0.5686 15 6 0.9618 6.8727 -2.2158 16 7 1.1862 7.3304 -3.4281 17 14 -0.6722 7.2128 -1.3767 18 1 -0.4358 7.9696 -0.1212 19 1 -1.5365 8.0121 -2.2818 20 1 -1.3434 5.9264 -1.0604 21 6 5.4457 4.9115 -1.8802 22 6 6.1513 6.2088 -1.5801 23 6 6.0893 7.2654 -2.4761 24 6 6.7500 8.4413 -2.1563 25 6 7.4526 8.5174 -0.9683 26 7 7.4940 7.4905 -0.1423 27 6 6.8735 6.3584 -0.4116 28 6 3.5648 1.4443 -0.1257 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 0.5488 2.1253 1.3968 35 1 2.0698 1.5876 2.1491 36 1 1.8559 4.0567 2.2382 37 1 1.7097 4.1081 0.4651 38 1 4.1044 3.0329 2.0229 39 1 4.0324 4.5995 1.1804 40 1 3.6619 3.0978 -2.2302 41 1 2.3872 3.7350 -1.1637 42 1 3.7812 6.8075 -2.3970 43 1 3.0725 5.3872 -3.2027 44 1 0.5034 7.8449 -3.8864 45 1 5.9640 4.0922 -1.3820 46 1 5.4441 4.7393 -2.9566 47 1 5.5361 7.1756 -3.3994 48 1 6.7201 9.2858 -2.8289 49 1 7.9740 9.4284 -0.7140 50 1 6.9298 5.5389 0.2896 51 1 3.9994 0.9053 0.7161 52 1 3.8532 0.9570 -1.0570 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000182944916.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:42 Heat of formation + Delta-G solvation = 4.440347 kcal Electronic energy + Delta-G solvation = -27926.997809 eV Core-core repulsion = 24503.822393 eV Total energy + Delta-G solvation = -3423.175416 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.87200 -39.19482 -36.48282 -33.77915 -32.78740 -31.99946 -31.23975 -30.55839 -28.78037 -27.35185 -25.95277 -24.13650 -23.44110 -23.03092 -21.93080 -21.81572 -20.42064 -20.13850 -17.99233 -16.70360 -16.51243 -15.92441 -15.55231 -15.00785 -14.69126 -14.67660 -14.40195 -13.97587 -13.93818 -13.42339 -13.33544 -13.05243 -12.88754 -12.75109 -12.64371 -12.35879 -12.24816 -11.95344 -11.81074 -11.51071 -11.35929 -11.10325 -11.02727 -10.93477 -10.86349 -10.75676 -10.65585 -10.39699 -10.21236 -9.98013 -9.61719 -9.56287 -9.46175 -9.29398 -9.20945 -9.01855 -8.56027 -8.43590 -7.24925 -6.04794 -4.04802 1.51241 1.70629 3.30923 3.35449 3.38422 4.16411 4.41661 4.78839 4.86775 4.91921 4.95987 5.13910 5.17653 5.28518 5.31380 5.37575 5.38706 5.42351 5.48012 5.51999 5.65266 5.70217 5.74153 5.79020 5.84943 5.94629 5.95312 5.97011 6.01087 6.06234 6.09650 6.12139 6.17785 6.23475 6.29974 6.36610 6.38912 6.46784 6.53086 6.56833 6.62090 6.73196 6.75395 6.82916 6.94188 7.06265 7.09283 7.28474 7.32720 7.82792 8.07950 8.18052 8.32964 8.52637 9.03472 9.59149 11.05964 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.009460 B = 0.005211 C = 0.003771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2959.184237 B = 5371.737299 C = 7424.006122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.118 4.118 3 C -0.091 4.091 4 H 0.077 0.923 5 C -0.110 4.110 6 C -0.128 4.128 7 C -0.098 4.098 8 C -0.083 4.083 9 H 0.060 0.940 10 C 0.065 3.935 11 N -0.526 5.526 12 C 0.189 3.811 13 C -0.503 4.503 14 H 0.066 0.934 15 C 0.057 3.943 16 N -0.899 5.899 17 Si 0.890 3.110 18 H -0.276 1.276 19 H -0.289 1.289 20 H -0.276 1.276 21 C 0.091 3.909 22 C -0.106 4.106 23 C -0.059 4.059 24 C -0.173 4.173 25 C 0.084 3.916 26 N -0.492 5.492 27 C 0.109 3.891 28 C -0.105 4.105 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.047 0.953 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.052 0.948 36 H 0.051 0.949 37 H 0.084 0.916 38 H 0.042 0.958 39 H 0.075 0.925 40 H 0.015 0.985 41 H 0.095 0.905 42 H 0.033 0.967 43 H -0.009 1.009 44 H 0.261 0.739 45 H 0.073 0.927 46 H 0.034 0.966 47 H 0.133 0.867 48 H 0.129 0.871 49 H 0.147 0.853 50 H 0.149 0.851 51 H 0.056 0.944 52 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.701 -9.177 4.683 12.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.155 4.155 3 C -0.109 4.109 4 H 0.095 0.905 5 C -0.147 4.147 6 C -0.165 4.165 7 C -0.135 4.135 8 C -0.102 4.102 9 H 0.079 0.921 10 C -0.062 4.062 11 N -0.250 5.250 12 C 0.064 3.936 13 C -0.542 4.542 14 H 0.084 0.916 15 C -0.144 4.144 16 N -0.539 5.539 17 Si 0.718 3.282 18 H -0.202 1.202 19 H -0.214 1.214 20 H -0.202 1.202 21 C -0.037 4.037 22 C -0.108 4.108 23 C -0.086 4.086 24 C -0.193 4.193 25 C -0.074 4.074 26 N -0.201 5.201 27 C -0.049 4.049 28 C -0.143 4.143 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.102 0.898 38 H 0.061 0.939 39 H 0.093 0.907 40 H 0.033 0.967 41 H 0.113 0.887 42 H 0.051 0.949 43 H 0.009 0.991 44 H 0.070 0.930 45 H 0.091 0.909 46 H 0.052 0.948 47 H 0.151 0.849 48 H 0.147 0.853 49 H 0.165 0.835 50 H 0.167 0.833 51 H 0.074 0.926 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.081 -8.797 5.783 12.687 hybrid contribution -1.577 -0.019 -1.349 2.075 sum 5.504 -8.816 4.433 11.299 Atomic orbital electron populations 1.21827 0.96216 1.00922 1.02201 1.21561 0.95697 0.96978 1.01270 1.21231 0.95630 0.95138 0.98928 0.90504 1.21590 1.00029 0.96404 0.96697 1.21655 0.96513 0.95896 1.02423 1.21332 0.95550 1.01282 0.95372 1.21171 0.99066 0.93605 0.96339 0.92142 1.22170 1.01156 0.88396 0.94512 1.62093 0.99606 1.10392 1.52931 1.19829 0.92126 0.91378 0.90286 1.21146 0.98187 1.33044 1.01803 0.91590 1.24943 0.98589 0.96013 0.94854 1.69936 1.34613 1.36942 1.12386 0.86674 0.83663 0.78420 0.79405 1.20182 1.21433 1.20199 1.20968 0.91917 0.93038 0.97825 1.20807 0.97454 0.97190 0.95350 1.21597 0.95061 0.92351 0.99591 1.22062 0.99539 0.98761 0.98973 1.22580 0.97103 0.96914 0.90756 1.67618 1.19844 1.00423 1.32213 1.22494 0.92976 0.94917 0.94465 1.21583 0.95282 0.96636 1.00802 0.92508 0.92632 0.93403 0.92444 0.92541 0.92506 0.92956 0.93054 0.89806 0.93886 0.90673 0.96676 0.88676 0.94937 0.99094 0.92974 0.90891 0.94833 0.84908 0.85325 0.83515 0.83347 0.92557 0.92699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.67 37.16 0.36 -1.33 16 2 C -0.12 -1.31 5.40 -26.73 -0.14 -1.46 16 3 C -0.09 -1.18 1.92 -90.62 -0.17 -1.36 16 4 H 0.08 1.16 6.57 -51.93 -0.34 0.82 16 5 C -0.11 -1.46 4.96 -26.73 -0.13 -1.59 16 6 C -0.13 -1.99 5.65 -26.73 -0.15 -2.14 16 7 C -0.10 -1.47 5.35 -26.73 -0.14 -1.61 16 8 C -0.08 -1.20 2.69 -90.59 -0.24 -1.44 16 9 H 0.06 0.84 6.43 -51.93 -0.33 0.51 16 10 C 0.07 1.16 3.49 -3.82 -0.01 1.15 16 11 N -0.53 -10.31 3.88 -237.52 -0.92 -11.23 16 12 C 0.19 4.59 4.55 -4.98 -0.02 4.57 16 13 C -0.50 -13.38 8.19 -34.44 -0.28 -13.66 16 14 H 0.07 1.73 5.93 -52.48 -0.31 1.42 16 15 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 16 N -0.90 -25.90 13.29 55.43 0.74 -25.17 16 17 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 C 0.09 1.53 5.00 -4.98 -0.02 1.51 16 22 C -0.11 -1.79 5.14 -104.48 -0.54 -2.33 16 23 C -0.06 -1.01 8.25 -39.28 -0.32 -1.33 16 24 C -0.17 -2.62 10.11 -39.44 -0.40 -3.02 16 25 C 0.08 1.25 11.18 -17.55 -0.20 1.05 16 26 N -0.49 -8.19 10.36 -13.25 -0.14 -8.33 16 27 C 0.11 1.77 10.85 -17.55 -0.19 1.58 16 28 C -0.10 -1.33 4.74 -26.70 -0.13 -1.46 16 29 H 0.06 0.62 6.56 -51.93 -0.34 0.28 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.75 6.57 -51.92 -0.34 0.41 16 35 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.08 1.57 4.66 -51.93 -0.24 1.32 16 38 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 1.29 7.78 -51.93 -0.40 0.89 16 40 H 0.02 0.27 8.04 -51.93 -0.42 -0.15 16 41 H 0.10 1.91 3.55 -51.93 -0.18 1.72 16 42 H 0.03 0.84 5.41 -51.93 -0.28 0.56 16 43 H -0.01 -0.23 8.11 -51.92 -0.42 -0.65 16 44 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 45 H 0.07 1.06 6.19 -51.93 -0.32 0.74 16 46 H 0.03 0.58 8.01 -51.93 -0.42 0.16 16 47 H 0.13 2.31 7.52 -52.48 -0.39 1.91 16 48 H 0.13 1.62 8.06 -52.48 -0.42 1.19 16 49 H 0.15 1.72 8.06 -52.48 -0.42 1.30 16 50 H 0.15 2.13 8.06 -52.49 -0.42 1.71 16 51 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 52 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 388.07 15.07 5.85 5.85 Total: -1.00 -28.63 388.07 -11.30 -39.93 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -8.96 Total: 4.08 kcal Atomic # 6 Polarization: -18.56 SS G_CDS: -2.84 Total: -21.40 kcal Atomic # 7 Polarization: -44.41 SS G_CDS: -0.32 Total: -44.73 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -28.63 -11.30 -39.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182944916.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.367 kcal (2) G-P(sol) polarization free energy of solvation -28.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds