Wall clock time and date at job start Tue Mar 31 2020 11:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46899 * 2 1 4 4 H 1.09006 * 109.47391 * 304.99907 * 3 2 1 5 5 C 1.53000 * 109.47547 * 65.00009 * 3 2 1 6 6 C 1.52992 * 109.47265 * 180.02562 * 5 3 2 7 7 C 1.53001 * 109.47156 * 299.99412 * 6 5 3 8 8 C 1.53004 * 109.46855 * 60.00314 * 7 6 5 9 9 H 1.08997 * 109.47262 * 180.02562 * 8 7 6 10 10 C 1.53006 * 109.46932 * 59.99969 * 8 7 6 11 11 N 1.46901 * 109.47179 * 66.03193 * 10 8 7 12 12 C 1.46895 * 111.00241 * 196.51503 * 11 10 8 13 13 C 1.50699 * 109.47127 * 67.55554 * 12 11 10 14 14 H 1.08003 * 119.99908 * 4.73541 * 13 12 11 15 15 C 1.37870 * 120.00075 * 184.72516 * 13 12 11 16 16 N 1.31516 * 120.00119 * 0.02562 * 15 13 12 17 17 Si 1.86808 * 120.00312 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.46706 * 60.00326 * 17 15 13 19 19 H 1.48495 * 109.47168 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.46867 * 300.00590 * 17 15 13 21 21 C 1.46898 * 111.00078 * 72.55638 * 11 10 8 22 22 C 1.50703 * 109.47187 * 196.43865 * 21 11 10 23 23 C 1.38672 * 120.42022 * 272.40239 * 22 21 11 24 24 C 1.38619 * 118.42050 * 179.78402 * 23 22 21 25 25 C 1.38228 * 119.15964 * 0.51390 * 24 23 22 26 26 N 1.31851 * 120.76573 * 359.72811 * 25 24 23 27 27 C 1.31881 * 121.72528 * 0.02562 * 26 25 24 28 28 C 1.52999 * 109.46984 * 184.99940 * 3 2 1 29 29 H 1.09000 * 109.47304 * 300.00400 * 1 2 3 30 30 H 1.09004 * 109.46931 * 60.00596 * 1 2 3 31 31 H 1.08998 * 109.46943 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47121 * 240.00098 * 2 1 3 33 33 H 1.08998 * 109.46906 * 119.99857 * 2 1 3 34 34 H 1.09008 * 109.46516 * 299.99936 * 5 3 2 35 35 H 1.08998 * 109.47139 * 59.99662 * 5 3 2 36 36 H 1.09006 * 109.47035 * 179.97438 * 6 5 3 37 37 H 1.09006 * 109.47673 * 59.99897 * 6 5 3 38 38 H 1.08998 * 109.47159 * 300.00457 * 7 6 5 39 39 H 1.08999 * 109.47580 * 179.97438 * 7 6 5 40 40 H 1.08997 * 109.46714 * 186.02644 * 10 8 7 41 41 H 1.08997 * 109.47020 * 306.03008 * 10 8 7 42 42 H 1.09001 * 109.47526 * 187.56297 * 12 11 10 43 43 H 1.09008 * 109.46858 * 307.56371 * 12 11 10 44 44 H 0.97006 * 119.99836 * 180.02562 * 16 15 13 45 45 H 1.09000 * 109.47355 * 316.44240 * 21 11 10 46 46 H 1.09001 * 109.47045 * 76.44388 * 21 11 10 47 47 H 1.08006 * 120.78867 * 0.02606 * 23 22 21 48 48 H 1.08003 * 120.42337 * 180.22329 * 24 23 22 49 49 H 1.08010 * 119.61663 * 179.70495 * 25 24 23 50 50 H 1.08001 * 119.62006 * 180.02562 * 27 26 25 51 51 H 1.08998 * 109.46963 * 299.99886 * 28 3 2 52 52 H 1.08997 * 109.47465 * 59.99773 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8419 5 6 1.6352 2.1266 1.3073 6 6 2.1446 3.5692 1.3070 7 6 3.6695 3.5717 1.1811 8 6 4.0743 2.8876 -0.1263 9 1 5.1606 2.8889 -0.2158 10 6 3.4637 3.6439 -1.3079 11 7 4.0614 4.9830 -1.3938 12 6 3.2508 5.8681 -2.2408 13 6 1.9324 6.1419 -1.5641 14 1 1.7480 5.7658 -0.5686 15 6 0.9618 6.8727 -2.2158 16 7 1.1862 7.3304 -3.4281 17 14 -0.6722 7.2128 -1.3767 18 1 -0.4358 7.9696 -0.1212 19 1 -1.5365 8.0121 -2.2818 20 1 -1.3434 5.9264 -1.0604 21 6 5.4457 4.9115 -1.8802 22 6 6.1513 6.2088 -1.5801 23 6 6.0893 7.2654 -2.4761 24 6 6.7500 8.4413 -2.1563 25 6 7.4526 8.5174 -0.9683 26 7 7.4940 7.4905 -0.1423 27 6 6.8735 6.3584 -0.4116 28 6 3.5648 1.4443 -0.1257 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 0.5488 2.1253 1.3968 35 1 2.0698 1.5876 2.1491 36 1 1.8559 4.0567 2.2382 37 1 1.7097 4.1081 0.4651 38 1 4.1044 3.0329 2.0229 39 1 4.0324 4.5995 1.1804 40 1 3.6619 3.0978 -2.2302 41 1 2.3872 3.7350 -1.1637 42 1 3.7812 6.8075 -2.3970 43 1 3.0725 5.3872 -3.2027 44 1 0.5034 7.8449 -3.8864 45 1 5.9640 4.0922 -1.3820 46 1 5.4441 4.7393 -2.9566 47 1 5.5361 7.1756 -3.3994 48 1 6.7201 9.2858 -2.8289 49 1 7.9740 9.4284 -0.7140 50 1 6.9298 5.5389 0.2896 51 1 3.9994 0.9053 0.7161 52 1 3.8532 0.9570 -1.0570 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000182944916.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:41 Heat of formation + Delta-G solvation = -9.359369 kcal Electronic energy + Delta-G solvation = -27927.596210 eV Core-core repulsion = 24503.822393 eV Total energy + Delta-G solvation = -3423.773816 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.15367 -40.38519 -37.92991 -34.97354 -34.67980 -33.33466 -32.50983 -31.87050 -29.88506 -29.11103 -27.32525 -25.79704 -24.58197 -24.26414 -23.35099 -23.07034 -21.84866 -21.27352 -19.23932 -18.53755 -17.93138 -17.30441 -16.83729 -16.52609 -16.18147 -16.00196 -15.72163 -15.32292 -15.19575 -14.71099 -14.53068 -14.35164 -14.14817 -14.01467 -13.95484 -13.75418 -13.65535 -13.41777 -13.23591 -12.96883 -12.69998 -12.65712 -12.43205 -12.32016 -12.15471 -12.08598 -11.95328 -11.74208 -11.63656 -11.43633 -11.23781 -10.84866 -10.69519 -10.67359 -10.56363 -10.48593 -10.35052 -9.83127 -8.91384 -8.17920 -6.24186 0.26967 0.40884 1.37005 1.38543 1.45825 2.38748 2.89179 3.15513 3.47623 3.64163 3.80186 3.91285 3.94628 3.98712 4.05152 4.15233 4.19226 4.28597 4.30712 4.44023 4.48940 4.55952 4.58175 4.64791 4.70171 4.75259 4.80859 4.86309 4.88467 4.91763 4.95360 5.01009 5.03753 5.11945 5.15101 5.23351 5.25366 5.27784 5.28753 5.31639 5.38641 5.43780 5.47081 5.51438 5.58685 5.67580 5.69946 5.74002 5.85759 5.86540 6.14233 6.42582 6.69354 6.93375 7.08562 7.44020 8.92516 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.009460 B = 0.005211 C = 0.003771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2959.184237 B = 5371.737299 C = 7424.006122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.112 4.112 3 C -0.091 4.091 4 H 0.045 0.955 5 C -0.103 4.103 6 C -0.127 4.127 7 C -0.092 4.092 8 C -0.074 4.074 9 H 0.075 0.925 10 C 0.070 3.930 11 N -0.526 5.526 12 C 0.206 3.794 13 C -0.509 4.509 14 H 0.065 0.935 15 C 0.006 3.994 16 N -0.933 5.933 17 Si 0.950 3.050 18 H -0.272 1.272 19 H -0.285 1.285 20 H -0.268 1.268 21 C 0.095 3.905 22 C -0.121 4.121 23 C -0.081 4.081 24 C -0.174 4.174 25 C 0.085 3.915 26 N -0.507 5.507 27 C 0.106 3.894 28 C -0.099 4.099 29 H 0.055 0.945 30 H 0.039 0.961 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.054 0.946 35 H 0.073 0.927 36 H 0.052 0.948 37 H 0.044 0.956 38 H 0.069 0.931 39 H 0.049 0.951 40 H 0.009 0.991 41 H 0.068 0.932 42 H 0.015 0.985 43 H -0.044 1.044 44 H 0.261 0.739 45 H 0.102 0.898 46 H 0.025 0.975 47 H 0.116 0.884 48 H 0.153 0.847 49 H 0.182 0.818 50 H 0.168 0.832 51 H 0.080 0.920 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.637 -10.505 6.834 14.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.150 4.150 3 C -0.109 4.109 4 H 0.064 0.936 5 C -0.141 4.141 6 C -0.165 4.165 7 C -0.130 4.130 8 C -0.093 4.093 9 H 0.093 0.907 10 C -0.058 4.058 11 N -0.249 5.249 12 C 0.080 3.920 13 C -0.548 4.548 14 H 0.083 0.917 15 C -0.192 4.192 16 N -0.574 5.574 17 Si 0.776 3.224 18 H -0.197 1.197 19 H -0.211 1.211 20 H -0.193 1.193 21 C -0.033 4.033 22 C -0.123 4.123 23 C -0.107 4.107 24 C -0.194 4.194 25 C -0.072 4.072 26 N -0.215 5.215 27 C -0.051 4.051 28 C -0.137 4.137 29 H 0.074 0.926 30 H 0.058 0.942 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.092 0.908 34 H 0.073 0.927 35 H 0.092 0.908 36 H 0.071 0.929 37 H 0.063 0.937 38 H 0.088 0.912 39 H 0.068 0.932 40 H 0.027 0.973 41 H 0.086 0.914 42 H 0.033 0.967 43 H -0.027 1.027 44 H 0.070 0.930 45 H 0.120 0.880 46 H 0.043 0.957 47 H 0.135 0.865 48 H 0.170 0.830 49 H 0.199 0.801 50 H 0.185 0.815 51 H 0.099 0.901 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 8.025 -10.143 7.945 15.179 hybrid contribution -1.824 0.432 -2.042 2.772 sum 6.201 -9.711 5.903 12.946 Atomic orbital electron populations 1.21835 0.96310 1.01718 1.01404 1.21518 0.95606 0.95514 1.02311 1.21194 0.96019 0.96138 0.97572 0.93649 1.21539 1.00021 0.94913 0.97582 1.21602 0.97009 0.97167 1.00702 1.21273 0.94999 1.00239 0.96487 1.21119 0.99593 0.94330 0.94248 0.90684 1.22153 0.99935 0.87711 0.96004 1.62030 1.00475 1.10883 1.51531 1.19444 0.92017 0.91332 0.89184 1.21467 0.99219 1.32323 1.01768 0.91699 1.25723 1.01972 0.96032 0.95435 1.70061 1.35682 1.37921 1.13750 0.85724 0.79792 0.78497 0.78428 1.19728 1.21066 1.19343 1.21010 0.90326 0.94405 0.97594 1.20840 0.98273 0.97152 0.96032 1.21677 0.95899 0.93705 0.99448 1.22350 0.98763 0.98659 0.99625 1.23159 0.96403 0.97607 0.90056 1.67691 1.20211 1.00878 1.32770 1.22756 0.92483 0.95552 0.94284 1.21559 0.94795 0.95198 1.02168 0.92598 0.94193 0.91794 0.91993 0.90798 0.92715 0.90793 0.92936 0.93742 0.91249 0.93174 0.97271 0.91359 0.96668 1.02676 0.93031 0.88012 0.95709 0.86547 0.82953 0.80077 0.81511 0.90131 0.92112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.17 9.67 71.98 0.70 -2.47 16 2 C -0.11 -2.24 5.40 30.59 0.17 -2.08 16 3 C -0.09 -2.25 1.92 -10.79 -0.02 -2.27 16 4 H 0.05 1.41 6.57 -2.38 -0.02 1.40 16 5 C -0.10 -2.58 4.96 30.59 0.15 -2.43 16 6 C -0.13 -3.92 5.65 30.59 0.17 -3.74 16 7 C -0.09 -2.64 5.35 30.60 0.16 -2.48 16 8 C -0.07 -2.04 2.69 -10.77 -0.03 -2.07 16 9 H 0.07 1.87 6.43 -2.39 -0.02 1.86 16 10 C 0.07 2.54 3.49 86.31 0.30 2.84 16 11 N -0.53 -21.27 3.88 -905.36 -3.51 -24.78 16 12 C 0.21 10.61 4.55 85.56 0.39 11.00 16 13 C -0.51 -28.24 8.19 25.60 0.21 -28.03 16 14 H 0.06 3.55 5.93 -2.91 -0.02 3.54 16 15 C 0.01 0.35 5.46 84.65 0.46 0.81 16 16 N -0.93 -55.76 13.29 21.44 0.28 -55.47 16 17 Si 0.95 44.70 29.54 68.60 2.03 46.73 16 18 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 19 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 20 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 21 C 0.09 3.23 5.00 85.56 0.43 3.66 16 22 C -0.12 -4.11 5.14 -19.77 -0.10 -4.21 16 23 C -0.08 -2.81 8.25 22.46 0.19 -2.63 16 24 C -0.17 -5.15 10.11 22.36 0.23 -4.92 16 25 C 0.08 2.37 11.18 84.69 0.95 3.32 16 26 N -0.51 -16.06 10.36 -195.84 -2.03 -18.09 16 27 C 0.11 3.34 10.85 84.67 0.92 4.26 16 28 C -0.10 -2.27 4.74 30.61 0.14 -2.12 16 29 H 0.05 1.14 6.56 -2.39 -0.02 1.12 16 30 H 0.04 0.92 8.14 -2.38 -0.02 0.90 16 31 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.05 1.38 6.57 -2.38 -0.02 1.37 16 35 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 37 H 0.04 1.72 4.66 -2.38 -0.01 1.71 16 38 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.05 1.68 7.78 -2.39 -0.02 1.67 16 40 H 0.01 0.34 8.04 -2.39 -0.02 0.32 16 41 H 0.07 2.89 3.55 -2.39 -0.01 2.88 16 42 H 0.02 0.84 5.41 -2.39 -0.01 0.82 16 43 H -0.04 -2.55 8.11 -2.38 -0.02 -2.57 16 44 H 0.26 14.85 8.31 -92.70 -0.77 14.08 16 45 H 0.10 2.83 6.19 -2.39 -0.01 2.82 16 46 H 0.02 0.88 8.01 -2.39 -0.02 0.87 16 47 H 0.12 4.35 7.52 -2.91 -0.02 4.33 16 48 H 0.15 3.64 8.06 -2.91 -0.02 3.62 16 49 H 0.18 3.70 8.06 -2.91 -0.02 3.68 16 50 H 0.17 4.47 8.06 -2.91 -0.02 4.45 16 51 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 52 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -64.19 388.07 3.06 -61.12 By element: Atomic # 1 Polarization: 23.19 SS G_CDS: 0.88 Total: 24.07 kcal Atomic # 6 Polarization: -38.98 SS G_CDS: 5.41 Total: -33.57 kcal Atomic # 7 Polarization: -93.10 SS G_CDS: -5.25 Total: -98.35 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -64.19 3.06 -61.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182944916.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.765 kcal (2) G-P(sol) polarization free energy of solvation -64.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds