Wall clock time and date at job start Tue Mar 31 2020 11:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47273 * 2 1 4 4 H 1.08999 * 109.47226 * 54.99664 * 3 2 1 5 5 C 1.52997 * 109.47032 * 295.00001 * 3 2 1 6 6 C 1.53003 * 109.47104 * 299.99923 * 5 3 2 7 7 C 1.52996 * 109.46917 * 299.99753 * 6 5 3 8 8 C 1.53005 * 109.46996 * 60.00454 * 7 6 5 9 9 H 1.08998 * 109.47638 * 59.99454 * 8 7 6 10 10 C 1.52998 * 109.47279 * 179.97438 * 8 7 6 11 11 N 1.46896 * 109.47132 * 296.85201 * 10 8 7 12 12 C 1.46904 * 110.99884 * 288.01677 * 11 10 8 13 13 C 1.50702 * 109.46831 * 299.67350 * 12 11 10 14 14 H 1.08000 * 120.00251 * 4.64468 * 13 12 11 15 15 C 1.37877 * 119.99784 * 184.64595 * 13 12 11 16 16 N 1.31516 * 119.99901 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00230 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.47056 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47318 * 119.99573 * 17 15 13 20 20 H 1.48497 * 109.47363 * 240.00229 * 17 15 13 21 21 C 1.46906 * 111.00426 * 164.06357 * 11 10 8 22 22 C 1.50699 * 109.47146 * 189.99867 * 21 11 10 23 23 C 1.38661 * 120.41874 * 90.00344 * 22 21 11 24 24 C 1.38631 * 118.41938 * 180.27238 * 23 22 21 25 25 C 1.38227 * 119.16151 * 359.47453 * 24 23 22 26 26 N 1.31849 * 120.76249 * 0.53626 * 25 24 23 27 27 C 1.31884 * 121.72711 * 359.73805 * 26 25 24 28 28 C 1.52998 * 109.47187 * 174.99782 * 3 2 1 29 29 H 1.08998 * 109.46761 * 60.00233 * 1 2 3 30 30 H 1.08999 * 109.46854 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47070 * 300.00216 * 1 2 3 32 32 H 1.09002 * 109.47070 * 239.99784 * 2 1 3 33 33 H 1.08998 * 109.46761 * 119.99767 * 2 1 3 34 34 H 1.08998 * 109.47415 * 180.02562 * 5 3 2 35 35 H 1.09004 * 109.47217 * 59.99974 * 5 3 2 36 36 H 1.08998 * 109.47247 * 180.02562 * 6 5 3 37 37 H 1.08990 * 109.46922 * 60.00112 * 6 5 3 38 38 H 1.08996 * 109.48011 * 300.00126 * 7 6 5 39 39 H 1.08999 * 109.47069 * 179.97438 * 7 6 5 40 40 H 1.08993 * 109.47475 * 176.84991 * 10 8 7 41 41 H 1.09005 * 109.47066 * 56.84608 * 10 8 7 42 42 H 1.08997 * 109.46832 * 59.67234 * 12 11 10 43 43 H 1.09002 * 109.47422 * 179.67174 * 12 11 10 44 44 H 0.97008 * 119.99954 * 180.02562 * 16 15 13 45 45 H 1.08997 * 109.46938 * 69.99718 * 21 11 10 46 46 H 1.09001 * 109.46519 * 309.99673 * 21 11 10 47 47 H 1.08005 * 120.79284 * 359.97438 * 23 22 21 48 48 H 1.08004 * 120.42073 * 179.74428 * 24 23 22 49 49 H 1.07997 * 119.61583 * 180.27486 * 25 24 23 50 50 H 1.08000 * 119.62032 * 179.97438 * 27 26 25 51 51 H 1.09002 * 109.47433 * 299.99819 * 28 3 2 52 52 H 1.08998 * 109.47026 * 179.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6353 2.1265 -1.3073 6 6 2.2454 1.3698 -2.4890 7 6 3.7702 1.3717 -2.3632 8 6 4.1749 0.6876 -1.0559 9 1 3.8116 -0.3400 -1.0558 10 6 5.6998 0.6889 -0.9304 11 7 6.2817 -0.1015 -2.0233 12 6 6.0411 -1.5365 -1.8212 13 6 6.6751 -1.9746 -0.5261 14 1 7.1386 -1.2456 0.1220 15 6 6.6633 -3.3062 -0.1687 16 7 6.0993 -4.1940 -0.9582 17 14 7.4497 -3.8494 1.4362 18 1 8.0128 -2.6672 2.1366 19 1 6.4249 -4.4934 2.2966 20 1 8.5373 -4.8195 1.1511 21 6 7.7170 0.1764 -2.1678 22 6 8.2255 -0.4548 -3.4382 23 6 8.2080 0.2537 -4.6300 24 6 8.6805 -0.3692 -5.7748 25 6 9.1601 -1.6627 -5.6887 26 7 9.1616 -2.3062 -4.5379 27 6 8.7149 -1.7471 -3.4301 28 6 3.5649 1.4443 0.1258 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.9990 3.1540 -1.3076 35 1 0.5490 2.1252 -1.3969 36 1 1.9574 1.8574 -3.4203 37 1 1.8821 0.3423 -2.4889 38 1 4.1336 2.3993 -2.3632 39 1 4.2048 0.8323 -3.2048 40 1 5.9860 0.2520 0.0263 41 1 6.0681 1.7133 -0.9868 42 1 4.9679 -1.7229 -1.7817 43 1 6.4772 -2.0980 -2.6475 44 1 6.0907 -5.1308 -0.7065 45 1 8.2549 -0.2384 -1.3153 46 1 7.8761 1.2540 -2.2085 47 1 7.8307 1.2650 -4.6665 48 1 8.6779 0.1512 -6.7212 49 1 9.5341 -2.1534 -6.5751 50 1 8.7316 -2.3058 -2.5060 51 1 3.8533 0.9570 1.0572 52 1 3.9282 2.4719 0.1253 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000182944933.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:45 Heat of formation + Delta-G solvation = 4.625926 kcal Electronic energy + Delta-G solvation = -27852.925277 eV Core-core repulsion = 24429.757909 eV Total energy + Delta-G solvation = -3423.167368 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.73148 -39.20434 -36.71565 -33.31652 -32.68474 -31.92955 -31.31619 -30.35749 -29.02092 -27.17256 -25.74266 -24.20355 -23.22604 -22.92912 -22.24952 -21.88981 -20.63898 -19.38700 -18.04397 -16.69117 -16.33497 -15.79438 -15.50060 -14.95399 -14.80147 -14.67792 -14.52112 -13.95439 -13.82283 -13.61803 -13.11752 -12.96953 -12.87127 -12.62148 -12.55151 -12.38296 -12.01453 -11.83955 -11.65337 -11.37078 -11.19921 -11.14897 -10.98465 -10.95007 -10.81717 -10.72074 -10.47752 -10.29602 -10.25316 -10.01146 -9.64798 -9.58864 -9.53069 -9.44689 -9.26371 -8.86853 -8.45913 -8.38662 -7.15977 -6.03161 -4.12630 1.64542 1.81132 3.25298 3.34778 3.35959 4.30967 4.39168 4.87777 4.92998 4.98707 5.05783 5.17458 5.22894 5.27248 5.37112 5.45445 5.47514 5.49814 5.53697 5.59160 5.64267 5.75434 5.81940 5.85615 5.90501 5.96437 5.99266 6.03011 6.06974 6.09985 6.15840 6.20511 6.33472 6.36833 6.37483 6.40657 6.49466 6.54117 6.55396 6.59206 6.67007 6.68542 6.83588 6.90877 6.96367 7.05893 7.24283 7.32217 7.54953 7.90421 8.03618 8.24544 8.29870 8.54492 8.98091 9.54031 11.01037 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.009774 B = 0.004953 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2864.110795 B = 5651.934693 C = 7649.592049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C -0.083 4.083 4 H 0.060 0.940 5 C -0.112 4.112 6 C -0.122 4.122 7 C -0.100 4.100 8 C -0.077 4.077 9 H 0.080 0.920 10 C 0.065 3.935 11 N -0.533 5.533 12 C 0.183 3.817 13 C -0.549 4.549 14 H 0.057 0.943 15 C 0.069 3.931 16 N -0.884 5.884 17 Si 0.881 3.119 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.283 1.283 21 C 0.100 3.900 22 C -0.108 4.108 23 C -0.067 4.067 24 C -0.187 4.187 25 C 0.082 3.918 26 N -0.490 5.490 27 C 0.126 3.874 28 C -0.108 4.108 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.047 0.953 32 H 0.074 0.926 33 H 0.060 0.940 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.051 0.949 37 H 0.063 0.937 38 H 0.047 0.953 39 H 0.072 0.928 40 H 0.048 0.952 41 H 0.046 0.954 42 H 0.029 0.971 43 H 0.037 0.963 44 H 0.262 0.738 45 H 0.055 0.945 46 H 0.060 0.940 47 H 0.126 0.874 48 H 0.124 0.876 49 H 0.145 0.855 50 H 0.164 0.836 51 H 0.059 0.941 52 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.175 12.303 -3.424 13.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.101 4.101 4 H 0.079 0.921 5 C -0.149 4.149 6 C -0.160 4.160 7 C -0.138 4.138 8 C -0.096 4.096 9 H 0.099 0.901 10 C -0.064 4.064 11 N -0.257 5.257 12 C 0.058 3.942 13 C -0.588 4.588 14 H 0.075 0.925 15 C -0.134 4.134 16 N -0.522 5.522 17 Si 0.709 3.291 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.209 1.209 21 C -0.028 4.028 22 C -0.110 4.110 23 C -0.094 4.094 24 C -0.207 4.207 25 C -0.075 4.075 26 N -0.198 5.198 27 C -0.031 4.031 28 C -0.146 4.146 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.092 0.908 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.082 0.918 38 H 0.066 0.934 39 H 0.091 0.909 40 H 0.066 0.934 41 H 0.064 0.936 42 H 0.047 0.953 43 H 0.055 0.945 44 H 0.071 0.929 45 H 0.073 0.927 46 H 0.078 0.922 47 H 0.144 0.856 48 H 0.142 0.858 49 H 0.162 0.838 50 H 0.182 0.818 51 H 0.078 0.922 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.130 11.392 -3.853 12.715 hybrid contribution 0.396 0.109 1.634 1.685 sum -3.734 11.501 -2.218 12.294 Atomic orbital electron populations 1.21815 0.96660 1.01171 1.01201 1.21679 0.95005 0.96629 1.02928 1.21089 0.95866 0.96044 0.97117 0.92147 1.21566 0.99549 0.98789 0.95032 1.21605 0.96894 1.00508 0.96965 1.21421 0.93864 0.99757 0.98756 1.21081 0.94769 1.00208 0.93543 0.90149 1.21980 0.93964 0.95838 0.94578 1.62560 1.10200 1.10425 1.42492 1.19829 0.97023 0.81580 0.95803 1.21698 1.37896 0.92875 1.06335 0.92517 1.24911 0.95186 0.96804 0.96499 1.69952 1.43600 1.02028 1.36584 0.86715 0.79316 0.78796 0.84276 1.19908 1.21041 1.20906 1.20803 0.91005 0.97601 0.93412 1.20849 0.98257 0.95693 0.96242 1.21384 0.96101 0.99896 0.91980 1.21983 1.02580 0.97116 0.99009 1.22628 0.97019 0.91981 0.95903 1.67734 1.15686 1.37285 0.99088 1.23028 0.91461 0.91929 0.96702 1.21575 0.94230 0.99925 0.98828 0.92800 0.93136 0.93367 0.90793 0.92115 0.92661 0.92604 0.93043 0.91833 0.93389 0.90893 0.93390 0.93555 0.95337 0.94541 0.92860 0.92727 0.92165 0.85566 0.85770 0.83799 0.81840 0.92225 0.92760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.67 37.16 0.36 -1.36 16 2 C -0.13 -1.67 4.69 -26.73 -0.13 -1.80 16 3 C -0.08 -1.03 2.66 -90.62 -0.24 -1.27 16 4 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 5 C -0.11 -1.31 5.21 -26.73 -0.14 -1.45 16 6 C -0.12 -1.58 5.65 -26.73 -0.15 -1.73 16 7 C -0.10 -1.47 5.08 -26.73 -0.14 -1.61 16 8 C -0.08 -1.24 1.91 -90.62 -0.17 -1.42 16 9 H 0.08 1.54 5.05 -51.93 -0.26 1.27 16 10 C 0.06 1.15 4.21 -3.83 -0.02 1.13 16 11 N -0.53 -10.37 4.03 -237.51 -0.96 -11.32 16 12 C 0.18 4.37 4.63 -4.97 -0.02 4.35 16 13 C -0.55 -13.96 7.23 -34.44 -0.25 -14.21 16 14 H 0.06 1.44 5.95 -52.49 -0.31 1.13 16 15 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 16 N -0.88 -25.10 13.29 55.43 0.74 -24.37 16 17 Si 0.88 20.81 29.54 -169.99 -5.02 15.79 16 18 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 21 C 0.10 1.81 4.96 -4.97 -0.02 1.79 16 22 C -0.11 -1.95 4.90 -104.48 -0.51 -2.46 16 23 C -0.07 -1.04 9.86 -39.28 -0.39 -1.42 16 24 C -0.19 -2.67 10.11 -39.44 -0.40 -3.07 16 25 C 0.08 1.30 11.18 -17.55 -0.20 1.10 16 26 N -0.49 -9.57 10.36 -13.25 -0.14 -9.70 16 27 C 0.13 2.54 9.09 -17.55 -0.16 2.38 16 28 C -0.11 -1.50 4.73 -26.73 -0.13 -1.63 16 29 H 0.05 0.58 6.56 -51.93 -0.34 0.24 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 1.11 4.83 -51.93 -0.25 0.86 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.60 6.57 -51.93 -0.34 0.26 16 36 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.88 6.32 -51.93 -0.33 0.55 16 38 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.07 1.21 7.69 -51.93 -0.40 0.81 16 40 H 0.05 0.96 6.10 -51.93 -0.32 0.64 16 41 H 0.05 0.74 7.81 -51.93 -0.41 0.33 16 42 H 0.03 0.75 6.63 -51.93 -0.34 0.40 16 43 H 0.04 0.97 5.92 -51.93 -0.31 0.66 16 44 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 45 H 0.05 1.08 6.59 -51.93 -0.34 0.74 16 46 H 0.06 0.95 7.81 -51.93 -0.41 0.54 16 47 H 0.13 1.67 8.06 -52.48 -0.42 1.24 16 48 H 0.12 1.36 8.06 -52.48 -0.42 0.93 16 49 H 0.14 1.83 8.06 -52.49 -0.42 1.40 16 50 H 0.16 3.66 7.87 -52.49 -0.41 3.25 16 51 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 52 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 387.23 15.07 5.84 5.84 Total: -1.00 -27.63 387.23 -11.32 -38.95 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -8.98 Total: 5.72 kcal Atomic # 6 Polarization: -18.11 SS G_CDS: -2.80 Total: -20.91 kcal Atomic # 7 Polarization: -45.03 SS G_CDS: -0.36 Total: -45.39 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -27.63 -11.32 -38.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182944933.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.579 kcal (2) G-P(sol) polarization free energy of solvation -27.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds