Wall clock time and date at job start Tue Mar 31 2020 11:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47273 * 2 1 4 4 H 1.08999 * 109.47226 * 54.99664 * 3 2 1 5 5 C 1.52997 * 109.47032 * 295.00001 * 3 2 1 6 6 C 1.53003 * 109.47104 * 299.99923 * 5 3 2 7 7 C 1.52996 * 109.46917 * 299.99753 * 6 5 3 8 8 C 1.53005 * 109.46996 * 60.00454 * 7 6 5 9 9 H 1.08998 * 109.47638 * 59.99454 * 8 7 6 10 10 C 1.52998 * 109.47279 * 179.97438 * 8 7 6 11 11 N 1.46896 * 109.47132 * 296.85201 * 10 8 7 12 12 C 1.46904 * 110.99884 * 288.01677 * 11 10 8 13 13 C 1.50702 * 109.46831 * 299.67350 * 12 11 10 14 14 H 1.08000 * 120.00251 * 4.64468 * 13 12 11 15 15 C 1.37877 * 119.99784 * 184.64595 * 13 12 11 16 16 N 1.31516 * 119.99901 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00230 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.47056 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47318 * 119.99573 * 17 15 13 20 20 H 1.48497 * 109.47363 * 240.00229 * 17 15 13 21 21 C 1.46906 * 111.00426 * 164.06357 * 11 10 8 22 22 C 1.50699 * 109.47146 * 189.99867 * 21 11 10 23 23 C 1.38661 * 120.41874 * 90.00344 * 22 21 11 24 24 C 1.38631 * 118.41938 * 180.27238 * 23 22 21 25 25 C 1.38227 * 119.16151 * 359.47453 * 24 23 22 26 26 N 1.31849 * 120.76249 * 0.53626 * 25 24 23 27 27 C 1.31884 * 121.72711 * 359.73805 * 26 25 24 28 28 C 1.52998 * 109.47187 * 174.99782 * 3 2 1 29 29 H 1.08998 * 109.46761 * 60.00233 * 1 2 3 30 30 H 1.08999 * 109.46854 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47070 * 300.00216 * 1 2 3 32 32 H 1.09002 * 109.47070 * 239.99784 * 2 1 3 33 33 H 1.08998 * 109.46761 * 119.99767 * 2 1 3 34 34 H 1.08998 * 109.47415 * 180.02562 * 5 3 2 35 35 H 1.09004 * 109.47217 * 59.99974 * 5 3 2 36 36 H 1.08998 * 109.47247 * 180.02562 * 6 5 3 37 37 H 1.08990 * 109.46922 * 60.00112 * 6 5 3 38 38 H 1.08996 * 109.48011 * 300.00126 * 7 6 5 39 39 H 1.08999 * 109.47069 * 179.97438 * 7 6 5 40 40 H 1.08993 * 109.47475 * 176.84991 * 10 8 7 41 41 H 1.09005 * 109.47066 * 56.84608 * 10 8 7 42 42 H 1.08997 * 109.46832 * 59.67234 * 12 11 10 43 43 H 1.09002 * 109.47422 * 179.67174 * 12 11 10 44 44 H 0.97008 * 119.99954 * 180.02562 * 16 15 13 45 45 H 1.08997 * 109.46938 * 69.99718 * 21 11 10 46 46 H 1.09001 * 109.46519 * 309.99673 * 21 11 10 47 47 H 1.08005 * 120.79284 * 359.97438 * 23 22 21 48 48 H 1.08004 * 120.42073 * 179.74428 * 24 23 22 49 49 H 1.07997 * 119.61583 * 180.27486 * 25 24 23 50 50 H 1.08000 * 119.62032 * 179.97438 * 27 26 25 51 51 H 1.09002 * 109.47433 * 299.99819 * 28 3 2 52 52 H 1.08998 * 109.47026 * 179.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6353 2.1265 -1.3073 6 6 2.2454 1.3698 -2.4890 7 6 3.7702 1.3717 -2.3632 8 6 4.1749 0.6876 -1.0559 9 1 3.8116 -0.3400 -1.0558 10 6 5.6998 0.6889 -0.9304 11 7 6.2817 -0.1015 -2.0233 12 6 6.0411 -1.5365 -1.8212 13 6 6.6751 -1.9746 -0.5261 14 1 7.1386 -1.2456 0.1220 15 6 6.6633 -3.3062 -0.1687 16 7 6.0993 -4.1940 -0.9582 17 14 7.4497 -3.8494 1.4362 18 1 8.0128 -2.6672 2.1366 19 1 6.4249 -4.4934 2.2966 20 1 8.5373 -4.8195 1.1511 21 6 7.7170 0.1764 -2.1678 22 6 8.2255 -0.4548 -3.4382 23 6 8.2080 0.2537 -4.6300 24 6 8.6805 -0.3692 -5.7748 25 6 9.1601 -1.6627 -5.6887 26 7 9.1616 -2.3062 -4.5379 27 6 8.7149 -1.7471 -3.4301 28 6 3.5649 1.4443 0.1258 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.9990 3.1540 -1.3076 35 1 0.5490 2.1252 -1.3969 36 1 1.9574 1.8574 -3.4203 37 1 1.8821 0.3423 -2.4889 38 1 4.1336 2.3993 -2.3632 39 1 4.2048 0.8323 -3.2048 40 1 5.9860 0.2520 0.0263 41 1 6.0681 1.7133 -0.9868 42 1 4.9679 -1.7229 -1.7817 43 1 6.4772 -2.0980 -2.6475 44 1 6.0907 -5.1308 -0.7065 45 1 8.2549 -0.2384 -1.3153 46 1 7.8761 1.2540 -2.2085 47 1 7.8307 1.2650 -4.6665 48 1 8.6779 0.1512 -6.7212 49 1 9.5341 -2.1534 -6.5751 50 1 8.7316 -2.3058 -2.5060 51 1 3.8533 0.9570 1.0572 52 1 3.9282 2.4719 0.1253 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000182944933.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:44 Heat of formation + Delta-G solvation = -9.103972 kcal Electronic energy + Delta-G solvation = -27853.520650 eV Core-core repulsion = 24429.757909 eV Total energy + Delta-G solvation = -3423.762741 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.09453 -40.38051 -38.24289 -34.73727 -34.44892 -33.29382 -32.54697 -31.64763 -30.13495 -29.04893 -27.08448 -25.91446 -24.48392 -24.22914 -23.61873 -23.01174 -21.96668 -20.98129 -19.14074 -18.54390 -17.77206 -17.21435 -16.89212 -16.49943 -16.35537 -15.86294 -15.74470 -15.55318 -15.12424 -14.84171 -14.56983 -14.35744 -14.14850 -13.97163 -13.84252 -13.79555 -13.19561 -13.12707 -12.94962 -12.89302 -12.68395 -12.61037 -12.53637 -12.40064 -12.28489 -12.10222 -11.84106 -11.78857 -11.69936 -11.52833 -11.35671 -10.83019 -10.69827 -10.66938 -10.59198 -10.50633 -10.22604 -9.78921 -8.90530 -8.10726 -6.28697 0.31878 0.51501 1.31934 1.34922 1.43927 2.36575 2.94116 3.14214 3.53416 3.70377 3.85406 3.93296 3.98697 4.04055 4.10997 4.25570 4.26054 4.30419 4.40672 4.45762 4.47988 4.62087 4.69852 4.71090 4.74132 4.75755 4.81872 4.88135 4.91422 4.98694 5.02058 5.03160 5.04550 5.13323 5.18457 5.24733 5.27549 5.30279 5.33968 5.36408 5.42198 5.46685 5.51363 5.54794 5.59908 5.62670 5.76175 5.78702 5.84954 5.95935 6.11270 6.31057 6.61637 6.93344 7.19060 7.41504 8.90173 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.009774 B = 0.004953 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2864.110795 B = 5651.934693 C = 7649.592049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.126 4.126 3 C -0.079 4.079 4 H 0.079 0.921 5 C -0.105 4.105 6 C -0.120 4.120 7 C -0.092 4.092 8 C -0.072 4.072 9 H 0.039 0.961 10 C 0.066 3.934 11 N -0.525 5.525 12 C 0.207 3.793 13 C -0.541 4.541 14 H 0.056 0.944 15 C 0.018 3.982 16 N -0.922 5.922 17 Si 0.941 3.059 18 H -0.265 1.265 19 H -0.282 1.282 20 H -0.283 1.283 21 C 0.103 3.897 22 C -0.120 4.120 23 C -0.063 4.063 24 C -0.169 4.169 25 C 0.073 3.927 26 N -0.524 5.524 27 C 0.097 3.903 28 C -0.104 4.104 29 H 0.064 0.936 30 H 0.045 0.955 31 H 0.062 0.938 32 H 0.048 0.952 33 H 0.041 0.959 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.044 0.956 38 H 0.067 0.933 39 H 0.048 0.952 40 H 0.019 0.981 41 H 0.076 0.924 42 H -0.004 1.004 43 H 0.008 0.992 44 H 0.260 0.740 45 H 0.029 0.971 46 H 0.095 0.905 47 H 0.159 0.841 48 H 0.172 0.828 49 H 0.177 0.823 50 H 0.122 0.878 51 H 0.043 0.957 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.618 15.959 -4.465 17.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.164 4.164 3 C -0.097 4.097 4 H 0.097 0.903 5 C -0.143 4.143 6 C -0.158 4.158 7 C -0.130 4.130 8 C -0.091 4.091 9 H 0.057 0.943 10 C -0.062 4.062 11 N -0.248 5.248 12 C 0.081 3.919 13 C -0.580 4.580 14 H 0.074 0.926 15 C -0.182 4.182 16 N -0.562 5.562 17 Si 0.767 3.233 18 H -0.189 1.189 19 H -0.208 1.208 20 H -0.209 1.209 21 C -0.025 4.025 22 C -0.123 4.123 23 C -0.089 4.089 24 C -0.188 4.188 25 C -0.084 4.084 26 N -0.234 5.234 27 C -0.059 4.059 28 C -0.142 4.142 29 H 0.083 0.917 30 H 0.064 0.936 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.063 0.937 38 H 0.085 0.915 39 H 0.067 0.933 40 H 0.038 0.962 41 H 0.094 0.906 42 H 0.014 0.986 43 H 0.026 0.974 44 H 0.069 0.931 45 H 0.047 0.953 46 H 0.114 0.886 47 H 0.177 0.823 48 H 0.189 0.811 49 H 0.194 0.806 50 H 0.140 0.860 51 H 0.062 0.938 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.569 15.067 -4.874 16.482 hybrid contribution 0.584 -1.009 1.843 2.181 sum -3.985 14.058 -3.031 14.923 Atomic orbital electron populations 1.21773 0.94758 1.01367 1.02404 1.21647 0.96691 0.97236 1.00777 1.21086 0.94580 0.95395 0.98660 0.90291 1.21536 1.00449 0.99005 0.93265 1.21575 0.95535 1.00014 0.98648 1.21317 0.95198 0.99946 0.96512 1.20980 0.93584 0.98628 0.95875 0.94289 1.22064 0.95184 0.96569 0.92417 1.62496 1.11550 1.07717 1.43022 1.19322 0.94298 0.84274 0.94036 1.21910 1.36683 0.92778 1.06609 0.92598 1.25650 0.95900 0.97127 0.99513 1.70079 1.45481 1.02179 1.38448 0.85762 0.78350 0.78463 0.80703 1.18938 1.20777 1.20926 1.20851 0.89363 0.99433 0.92866 1.20826 0.98817 0.95145 0.97492 1.21765 0.95151 1.01024 0.91007 1.22461 0.99705 0.96201 1.00423 1.23274 0.96554 0.93088 0.95479 1.67619 1.16878 1.38755 1.00099 1.22534 0.94414 0.93023 0.95978 1.21544 0.95475 1.00299 0.96836 0.91701 0.93579 0.91900 0.93343 0.94042 0.91010 0.91046 0.91385 0.93704 0.91482 0.93286 0.96247 0.90554 0.98588 0.97439 0.93057 0.95288 0.88638 0.82332 0.81078 0.80556 0.86049 0.93783 0.90690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.17 9.67 71.98 0.70 -2.47 16 2 C -0.13 -3.42 4.69 30.60 0.14 -3.28 16 3 C -0.08 -1.84 2.66 -10.80 -0.03 -1.87 16 4 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 5 C -0.11 -2.14 5.21 30.59 0.16 -1.98 16 6 C -0.12 -2.93 5.65 30.59 0.17 -2.75 16 7 C -0.09 -2.59 5.08 30.59 0.16 -2.44 16 8 C -0.07 -2.35 1.91 -10.79 -0.02 -2.37 16 9 H 0.04 1.60 5.05 -2.39 -0.01 1.59 16 10 C 0.07 2.34 4.21 86.30 0.36 2.71 16 11 N -0.53 -21.00 4.03 -905.36 -3.65 -24.65 16 12 C 0.21 10.61 4.63 85.56 0.40 11.01 16 13 C -0.54 -29.21 7.23 25.60 0.19 -29.02 16 14 H 0.06 2.98 5.95 -2.91 -0.02 2.97 16 15 C 0.02 0.99 5.46 84.65 0.46 1.46 16 16 N -0.92 -55.64 13.29 21.45 0.28 -55.36 16 17 Si 0.94 44.64 29.54 68.60 2.03 46.66 16 18 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 19 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 20 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 21 C 0.10 3.75 4.96 85.56 0.42 4.18 16 22 C -0.12 -4.38 4.90 -19.78 -0.10 -4.48 16 23 C -0.06 -1.78 9.86 22.46 0.22 -1.56 16 24 C -0.17 -4.22 10.11 22.36 0.23 -3.99 16 25 C 0.07 2.21 11.18 84.69 0.95 3.16 16 26 N -0.52 -21.11 10.36 -195.84 -2.03 -23.14 16 27 C 0.10 4.15 9.09 84.67 0.77 4.92 16 28 C -0.10 -2.79 4.73 30.59 0.14 -2.65 16 29 H 0.06 1.26 6.56 -2.39 -0.02 1.25 16 30 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.05 1.56 4.83 -2.39 -0.01 1.54 16 33 H 0.04 1.24 8.14 -2.39 -0.02 1.23 16 34 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.07 1.27 6.57 -2.38 -0.02 1.26 16 36 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.04 1.26 6.32 -2.39 -0.02 1.24 16 38 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.05 1.61 7.69 -2.39 -0.02 1.59 16 40 H 0.02 0.80 6.10 -2.39 -0.01 0.79 16 41 H 0.08 2.28 7.81 -2.38 -0.02 2.26 16 42 H 0.00 -0.22 6.63 -2.39 -0.02 -0.24 16 43 H 0.01 0.43 5.92 -2.39 -0.01 0.42 16 44 H 0.26 15.03 8.31 -92.70 -0.77 14.26 16 45 H 0.03 1.20 6.59 -2.39 -0.02 1.18 16 46 H 0.10 2.78 7.81 -2.39 -0.02 2.77 16 47 H 0.16 3.45 8.06 -2.91 -0.02 3.42 16 48 H 0.17 2.72 8.06 -2.91 -0.02 2.69 16 49 H 0.18 3.99 8.06 -2.91 -0.02 3.97 16 50 H 0.12 6.07 7.87 -2.91 -0.02 6.05 16 51 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 52 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -66.01 387.23 2.83 -63.18 By element: Atomic # 1 Polarization: 23.87 SS G_CDS: 0.88 Total: 24.75 kcal Atomic # 6 Polarization: -36.76 SS G_CDS: 5.32 Total: -31.44 kcal Atomic # 7 Polarization: -97.76 SS G_CDS: -5.39 Total: -103.15 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.66 kcal Total: -66.01 2.83 -63.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182944933.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.071 kcal (2) G-P(sol) polarization free energy of solvation -66.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds