Wall clock time and date at job start Tue Mar 31 2020 11:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46992 * 2 1 4 4 H 1.09002 * 109.47046 * 304.99502 * 3 2 1 5 5 C 1.52999 * 109.47254 * 64.99807 * 3 2 1 6 6 C 1.53001 * 109.47034 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.47405 * 300.00245 * 6 5 3 8 8 C 1.52999 * 109.47225 * 59.99872 * 7 6 5 9 9 H 1.09002 * 109.47343 * 60.00173 * 8 7 6 10 10 C 1.52997 * 109.47225 * 180.02562 * 8 7 6 11 11 N 1.46893 * 109.47308 * 294.77203 * 10 8 7 12 12 C 1.46904 * 111.00305 * 163.94112 * 11 10 8 13 13 C 1.50695 * 109.47569 * 202.95360 * 12 11 10 14 14 H 1.07997 * 120.00350 * 240.31793 * 13 12 11 15 15 C 1.37881 * 119.99545 * 60.32100 * 13 12 11 16 16 N 1.31519 * 120.00275 * 4.19592 * 15 13 12 17 17 Si 1.86800 * 120.00001 * 184.47804 * 15 13 12 18 18 H 1.48497 * 109.47311 * 174.75208 * 17 15 13 19 19 H 1.48498 * 109.46891 * 294.75953 * 17 15 13 20 20 H 1.48507 * 109.47043 * 54.75291 * 17 15 13 21 21 C 1.46895 * 111.00168 * 287.90165 * 11 10 8 22 22 C 1.50708 * 109.47135 * 169.99702 * 21 11 10 23 23 C 1.38664 * 120.41952 * 269.71952 * 22 21 11 24 24 C 1.38630 * 118.42065 * 179.78645 * 23 22 21 25 25 C 1.38222 * 119.16122 * 0.51226 * 24 23 22 26 26 N 1.31859 * 120.76027 * 359.72452 * 25 24 23 27 27 C 1.31881 * 121.72857 * 0.02562 * 26 25 24 28 28 C 1.52997 * 109.47045 * 184.99967 * 3 2 1 29 29 H 1.09002 * 109.46881 * 300.00206 * 1 2 3 30 30 H 1.09000 * 109.46727 * 60.00691 * 1 2 3 31 31 H 1.09000 * 109.46902 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47123 * 239.99488 * 2 1 3 33 33 H 1.09004 * 109.46598 * 119.99802 * 2 1 3 34 34 H 1.09002 * 109.47343 * 59.99876 * 5 3 2 35 35 H 1.08996 * 109.47073 * 299.99809 * 5 3 2 36 36 H 1.08996 * 109.47305 * 179.97438 * 6 5 3 37 37 H 1.09005 * 109.46721 * 60.00415 * 6 5 3 38 38 H 1.09002 * 109.46819 * 299.99724 * 7 6 5 39 39 H 1.09000 * 109.46965 * 179.97438 * 7 6 5 40 40 H 1.09002 * 109.47119 * 174.77183 * 10 8 7 41 41 H 1.09009 * 109.46980 * 54.77597 * 10 8 7 42 42 H 1.09008 * 109.46646 * 82.95895 * 12 11 10 43 43 H 1.08999 * 109.47306 * 322.96602 * 12 11 10 44 44 H 0.97002 * 119.99294 * 5.79277 * 16 15 13 45 45 H 1.08996 * 109.46969 * 289.99496 * 21 11 10 46 46 H 1.09000 * 109.47209 * 50.00250 * 21 11 10 47 47 H 1.08004 * 120.79222 * 0.02562 * 23 22 21 48 48 H 1.08001 * 120.41681 * 180.26387 * 24 23 22 49 49 H 1.07994 * 119.62290 * 179.70892 * 25 24 23 50 50 H 1.07997 * 119.61828 * 179.97438 * 27 26 25 51 51 H 1.09004 * 109.47256 * 59.99641 * 28 3 2 52 52 H 1.09005 * 109.47319 * 299.99754 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 1.6352 2.1266 1.3073 6 6 2.1458 3.5689 1.3075 7 6 3.6706 3.5702 1.1821 8 6 4.0754 2.8862 -0.1252 9 1 3.6411 3.4254 -0.9671 10 6 5.6002 2.8869 -0.2504 11 7 6.0806 4.2694 -0.3758 12 6 7.5245 4.3506 -0.1179 13 6 7.8821 5.7534 0.3007 14 1 8.5818 6.3302 -0.2858 15 6 7.3159 6.3003 1.4327 16 7 6.5283 5.5707 2.1924 17 14 7.6611 8.0801 1.8831 18 1 6.8412 8.4605 3.0613 19 1 9.1010 8.2375 2.2102 20 1 7.3154 8.9571 0.7355 21 6 5.7494 4.8242 -1.6950 22 6 6.0324 6.3044 -1.7030 23 6 5.0463 7.2098 -1.3415 24 6 5.3531 8.5616 -1.3592 25 6 6.6194 8.9598 -1.7443 26 7 7.5310 8.0707 -2.0866 27 6 7.2760 6.7769 -2.0767 28 6 3.5648 1.4443 -0.1257 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 2.0698 1.5876 2.1492 35 1 0.5490 2.1253 1.3968 36 1 1.8570 4.0564 2.2386 37 1 1.7114 4.1081 0.4656 38 1 4.1048 3.0310 2.0240 39 1 4.0342 4.5978 1.1818 40 1 5.8926 2.3192 -1.1337 41 1 6.0378 2.4293 0.6370 42 1 8.0707 4.0919 -1.0252 43 1 7.7912 3.6547 0.6775 44 1 6.4123 4.6262 2.0044 45 1 6.3549 4.3344 -2.4575 46 1 4.6933 4.6552 -1.9056 47 1 4.0638 6.8697 -1.0492 48 1 4.6107 9.2945 -1.0796 49 1 6.8650 10.0113 -1.7654 50 1 8.0481 6.0785 -2.3639 51 1 3.8532 0.9569 -1.0571 52 1 3.9995 0.9053 0.7161 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000182944953.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:48 Heat of formation + Delta-G solvation = 7.818262 kcal Electronic energy + Delta-G solvation = -28366.939240 eV Core-core repulsion = 24943.910302 eV Total energy + Delta-G solvation = -3423.028938 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.49339 -38.89634 -36.65015 -33.89515 -32.53648 -31.88688 -31.06867 -30.24130 -28.89584 -26.89930 -25.75721 -24.00215 -23.00435 -22.60296 -21.84836 -21.61514 -20.44232 -19.62135 -19.14096 -16.73764 -16.24852 -15.54400 -15.16844 -15.13840 -14.77586 -14.64950 -14.01852 -13.80427 -13.73013 -13.50133 -13.20783 -13.08239 -12.74062 -12.65249 -12.49967 -12.20664 -12.14691 -11.79014 -11.61174 -11.51826 -11.32996 -11.18271 -11.06290 -10.85322 -10.71693 -10.60718 -10.53996 -10.37396 -10.10853 -9.91119 -9.79598 -9.62661 -9.50575 -8.87386 -8.62175 -8.52494 -8.43713 -7.73859 -7.10879 -6.13485 -3.85151 2.07836 2.24441 3.52839 3.58185 3.72748 4.58676 4.66902 4.73870 4.81760 4.94320 5.12551 5.17056 5.29669 5.36789 5.40838 5.46436 5.55375 5.60877 5.64561 5.65581 5.73009 5.77653 5.83135 5.85331 5.87587 5.90625 5.93829 5.96352 5.99513 6.07775 6.12888 6.14779 6.20911 6.25604 6.30000 6.31962 6.49469 6.51111 6.54819 6.58433 6.61581 6.73354 6.82000 6.95289 6.97591 7.03887 7.21844 7.24052 7.62303 7.97596 8.17775 8.46069 8.64941 8.89145 9.08513 9.86946 11.24389 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.017319 B = 0.004070 C = 0.003894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.375201 B = 6877.697695 C = 7188.842493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.084 4.084 4 H 0.065 0.935 5 C -0.112 4.112 6 C -0.119 4.119 7 C -0.102 4.102 8 C -0.076 4.076 9 H 0.061 0.939 10 C 0.058 3.942 11 N -0.510 5.510 12 C 0.176 3.824 13 C -0.596 4.596 14 H 0.052 0.948 15 C 0.054 3.946 16 N -0.883 5.883 17 Si 1.034 2.966 18 H -0.289 1.289 19 H -0.296 1.296 20 H -0.272 1.272 21 C 0.109 3.891 22 C -0.078 4.078 23 C -0.066 4.066 24 C -0.187 4.187 25 C 0.087 3.913 26 N -0.502 5.502 27 C 0.158 3.842 28 C -0.108 4.108 29 H 0.056 0.944 30 H 0.051 0.949 31 H 0.048 0.952 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.053 0.947 38 H 0.052 0.948 39 H 0.090 0.910 40 H 0.013 0.987 41 H 0.064 0.936 42 H -0.012 1.012 43 H 0.018 0.982 44 H 0.280 0.720 45 H 0.022 0.978 46 H 0.063 0.937 47 H 0.117 0.883 48 H 0.116 0.884 49 H 0.135 0.865 50 H 0.136 0.864 51 H 0.053 0.947 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.343 -6.231 -5.669 13.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.102 4.102 4 H 0.083 0.917 5 C -0.150 4.150 6 C -0.156 4.156 7 C -0.139 4.139 8 C -0.095 4.095 9 H 0.079 0.921 10 C -0.071 4.071 11 N -0.235 5.235 12 C 0.052 3.948 13 C -0.634 4.634 14 H 0.070 0.930 15 C -0.156 4.156 16 N -0.516 5.516 17 Si 0.864 3.136 18 H -0.215 1.215 19 H -0.223 1.223 20 H -0.198 1.198 21 C -0.019 4.019 22 C -0.080 4.080 23 C -0.092 4.092 24 C -0.207 4.207 25 C -0.069 4.069 26 N -0.212 5.212 27 C 0.000 4.000 28 C -0.146 4.146 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.109 0.891 40 H 0.031 0.969 41 H 0.082 0.918 42 H 0.006 0.994 43 H 0.036 0.964 44 H 0.092 0.908 45 H 0.040 0.960 46 H 0.082 0.918 47 H 0.135 0.865 48 H 0.135 0.865 49 H 0.153 0.847 50 H 0.153 0.847 51 H 0.071 0.929 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.137 -4.480 -4.477 11.953 hybrid contribution 0.009 -1.955 -1.122 2.254 sum -10.129 -6.435 -5.599 13.242 Atomic orbital electron populations 1.21819 0.96253 1.01084 1.01852 1.21579 0.95563 0.96941 1.01640 1.21144 0.95802 0.95103 0.98189 0.91657 1.21625 0.99684 0.96518 0.97145 1.21560 0.97490 0.95602 1.00993 1.21434 0.93189 1.03271 0.96010 1.21105 0.95217 0.94473 0.98719 0.92082 1.22131 0.94597 0.91237 0.99087 1.62688 1.19307 1.15612 1.25887 1.19923 0.82584 0.98394 0.93903 1.21849 1.29279 0.99979 1.12311 0.93040 1.25221 0.93183 1.04344 0.92835 1.70598 1.32720 1.09408 1.38918 0.84113 0.75694 0.77125 0.76683 1.21490 1.22294 1.19793 1.20779 0.99088 0.91066 0.91008 1.20311 0.94521 0.95636 0.97518 1.21060 0.99073 0.92595 0.96461 1.21771 0.98458 0.96435 1.04071 1.22255 0.89723 0.98449 0.96477 1.67539 1.34264 1.02837 1.16542 1.22119 0.93825 0.91307 0.92766 1.21620 0.94576 0.97358 1.01073 0.92495 0.92959 0.93246 0.92373 0.92203 0.92367 0.92674 0.92583 0.92826 0.92896 0.89133 0.96907 0.91775 0.99424 0.96373 0.90784 0.96030 0.91827 0.86487 0.86546 0.84717 0.84691 0.92850 0.92286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.67 37.16 0.36 -1.00 16 2 C -0.12 -1.19 5.40 -26.73 -0.14 -1.34 16 3 C -0.08 -0.97 2.19 -90.62 -0.20 -1.17 16 4 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 5 C -0.11 -1.36 4.96 -26.73 -0.13 -1.49 16 6 C -0.12 -1.69 5.92 -26.73 -0.16 -1.85 16 7 C -0.10 -1.72 5.09 -26.73 -0.14 -1.86 16 8 C -0.08 -1.18 2.21 -90.65 -0.20 -1.38 16 9 H 0.06 0.96 6.45 -51.93 -0.33 0.63 16 10 C 0.06 1.03 4.35 -3.83 -0.02 1.01 16 11 N -0.51 -10.48 2.88 -237.52 -0.68 -11.16 16 12 C 0.18 4.15 4.31 -4.98 -0.02 4.13 16 13 C -0.60 -15.50 5.94 -34.44 -0.20 -15.70 16 14 H 0.05 1.40 6.19 -52.49 -0.32 1.08 16 15 C 0.05 1.47 5.37 -17.82 -0.10 1.38 16 16 N -0.88 -24.77 13.43 55.43 0.74 -24.03 16 17 Si 1.03 25.41 29.91 -169.99 -5.08 20.33 16 18 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 19 H -0.30 -7.26 7.11 56.52 0.40 -6.86 16 20 H -0.27 -6.39 5.65 56.52 0.32 -6.07 16 21 C 0.11 2.04 4.96 -4.97 -0.02 2.02 16 22 C -0.08 -1.55 4.14 -104.48 -0.43 -1.98 16 23 C -0.07 -1.26 9.86 -39.28 -0.39 -1.65 16 24 C -0.19 -3.42 10.11 -39.44 -0.40 -3.82 16 25 C 0.09 1.65 9.79 -17.55 -0.17 1.48 16 26 N -0.50 -10.53 10.36 -13.26 -0.14 -10.67 16 27 C 0.16 3.28 7.11 -17.55 -0.12 3.16 16 28 C -0.11 -1.41 4.48 -26.76 -0.12 -1.53 16 29 H 0.06 0.51 6.56 -51.93 -0.34 0.16 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.05 0.60 6.56 -51.93 -0.34 0.26 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.09 1.90 7.76 -51.93 -0.40 1.49 16 40 H 0.01 0.22 8.05 -51.93 -0.42 -0.20 16 41 H 0.06 1.22 7.65 -51.92 -0.40 0.82 16 42 H -0.01 -0.29 7.79 -51.92 -0.40 -0.69 16 43 H 0.02 0.46 7.23 -51.93 -0.38 0.08 16 44 H 0.28 7.76 6.68 -40.82 -0.27 7.49 16 45 H 0.02 0.39 7.88 -51.93 -0.41 -0.02 16 46 H 0.06 1.09 6.29 -51.93 -0.33 0.76 16 47 H 0.12 2.09 8.06 -52.48 -0.42 1.67 16 48 H 0.12 1.80 8.06 -52.49 -0.42 1.38 16 49 H 0.14 2.20 8.06 -52.49 -0.42 1.78 16 50 H 0.14 2.77 7.84 -52.49 -0.41 2.36 16 51 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 52 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 388.96 15.07 5.86 5.86 Total: -1.00 -27.68 388.96 -11.46 -39.14 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -9.56 Total: 2.11 kcal Atomic # 6 Polarization: -18.98 SS G_CDS: -2.61 Total: -21.58 kcal Atomic # 7 Polarization: -45.79 SS G_CDS: -0.08 Total: -45.86 kcal Atomic # 14 Polarization: 25.41 SS G_CDS: -5.08 Total: 20.33 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -27.68 -11.46 -39.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182944953.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.962 kcal (2) G-P(sol) polarization free energy of solvation -27.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds