Wall clock time and date at job start Tue Mar 31 2020 11:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46992 * 2 1 4 4 H 1.09002 * 109.47046 * 304.99502 * 3 2 1 5 5 C 1.52999 * 109.47254 * 64.99807 * 3 2 1 6 6 C 1.53001 * 109.47034 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.47405 * 300.00245 * 6 5 3 8 8 C 1.52999 * 109.47225 * 59.99872 * 7 6 5 9 9 H 1.09002 * 109.47343 * 60.00173 * 8 7 6 10 10 C 1.52997 * 109.47225 * 180.02562 * 8 7 6 11 11 N 1.46893 * 109.47308 * 294.77203 * 10 8 7 12 12 C 1.46904 * 111.00305 * 163.94112 * 11 10 8 13 13 C 1.50695 * 109.47569 * 202.95360 * 12 11 10 14 14 H 1.07997 * 120.00350 * 240.31793 * 13 12 11 15 15 C 1.37881 * 119.99545 * 60.32100 * 13 12 11 16 16 N 1.31519 * 120.00275 * 4.19592 * 15 13 12 17 17 Si 1.86800 * 120.00001 * 184.47804 * 15 13 12 18 18 H 1.48497 * 109.47311 * 174.75208 * 17 15 13 19 19 H 1.48498 * 109.46891 * 294.75953 * 17 15 13 20 20 H 1.48507 * 109.47043 * 54.75291 * 17 15 13 21 21 C 1.46895 * 111.00168 * 287.90165 * 11 10 8 22 22 C 1.50708 * 109.47135 * 169.99702 * 21 11 10 23 23 C 1.38664 * 120.41952 * 269.71952 * 22 21 11 24 24 C 1.38630 * 118.42065 * 179.78645 * 23 22 21 25 25 C 1.38222 * 119.16122 * 0.51226 * 24 23 22 26 26 N 1.31859 * 120.76027 * 359.72452 * 25 24 23 27 27 C 1.31881 * 121.72857 * 0.02562 * 26 25 24 28 28 C 1.52997 * 109.47045 * 184.99967 * 3 2 1 29 29 H 1.09002 * 109.46881 * 300.00206 * 1 2 3 30 30 H 1.09000 * 109.46727 * 60.00691 * 1 2 3 31 31 H 1.09000 * 109.46902 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47123 * 239.99488 * 2 1 3 33 33 H 1.09004 * 109.46598 * 119.99802 * 2 1 3 34 34 H 1.09002 * 109.47343 * 59.99876 * 5 3 2 35 35 H 1.08996 * 109.47073 * 299.99809 * 5 3 2 36 36 H 1.08996 * 109.47305 * 179.97438 * 6 5 3 37 37 H 1.09005 * 109.46721 * 60.00415 * 6 5 3 38 38 H 1.09002 * 109.46819 * 299.99724 * 7 6 5 39 39 H 1.09000 * 109.46965 * 179.97438 * 7 6 5 40 40 H 1.09002 * 109.47119 * 174.77183 * 10 8 7 41 41 H 1.09009 * 109.46980 * 54.77597 * 10 8 7 42 42 H 1.09008 * 109.46646 * 82.95895 * 12 11 10 43 43 H 1.08999 * 109.47306 * 322.96602 * 12 11 10 44 44 H 0.97002 * 119.99294 * 5.79277 * 16 15 13 45 45 H 1.08996 * 109.46969 * 289.99496 * 21 11 10 46 46 H 1.09000 * 109.47209 * 50.00250 * 21 11 10 47 47 H 1.08004 * 120.79222 * 0.02562 * 23 22 21 48 48 H 1.08001 * 120.41681 * 180.26387 * 24 23 22 49 49 H 1.07994 * 119.62290 * 179.70892 * 25 24 23 50 50 H 1.07997 * 119.61828 * 179.97438 * 27 26 25 51 51 H 1.09004 * 109.47256 * 59.99641 * 28 3 2 52 52 H 1.09005 * 109.47319 * 299.99754 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 1.6352 2.1266 1.3073 6 6 2.1458 3.5689 1.3075 7 6 3.6706 3.5702 1.1821 8 6 4.0754 2.8862 -0.1252 9 1 3.6411 3.4254 -0.9671 10 6 5.6002 2.8869 -0.2504 11 7 6.0806 4.2694 -0.3758 12 6 7.5245 4.3506 -0.1179 13 6 7.8821 5.7534 0.3007 14 1 8.5818 6.3302 -0.2858 15 6 7.3159 6.3003 1.4327 16 7 6.5283 5.5707 2.1924 17 14 7.6611 8.0801 1.8831 18 1 6.8412 8.4605 3.0613 19 1 9.1010 8.2375 2.2102 20 1 7.3154 8.9571 0.7355 21 6 5.7494 4.8242 -1.6950 22 6 6.0324 6.3044 -1.7030 23 6 5.0463 7.2098 -1.3415 24 6 5.3531 8.5616 -1.3592 25 6 6.6194 8.9598 -1.7443 26 7 7.5310 8.0707 -2.0866 27 6 7.2760 6.7769 -2.0767 28 6 3.5648 1.4443 -0.1257 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 2.0698 1.5876 2.1492 35 1 0.5490 2.1253 1.3968 36 1 1.8570 4.0564 2.2386 37 1 1.7114 4.1081 0.4656 38 1 4.1048 3.0310 2.0240 39 1 4.0342 4.5978 1.1818 40 1 5.8926 2.3192 -1.1337 41 1 6.0378 2.4293 0.6370 42 1 8.0707 4.0919 -1.0252 43 1 7.7912 3.6547 0.6775 44 1 6.4123 4.6262 2.0044 45 1 6.3549 4.3344 -2.4575 46 1 4.6933 4.6552 -1.9056 47 1 4.0638 6.8697 -1.0492 48 1 4.6107 9.2945 -1.0796 49 1 6.8650 10.0113 -1.7654 50 1 8.0481 6.0785 -2.3639 51 1 3.8532 0.9569 -1.0571 52 1 3.9995 0.9053 0.7161 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000182944953.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:47 Heat of formation + Delta-G solvation = -4.063129 kcal Electronic energy + Delta-G solvation = -28367.454456 eV Core-core repulsion = 24943.910302 eV Total energy + Delta-G solvation = -3423.544154 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.99971 -40.10693 -38.15096 -35.09463 -34.35183 -33.30813 -32.51868 -31.63567 -29.95773 -28.69595 -27.20501 -25.42052 -24.26747 -24.14653 -23.44393 -22.80294 -21.92968 -20.64801 -20.47546 -18.72396 -17.75910 -17.11101 -16.68560 -16.34515 -16.10549 -15.68341 -15.65825 -15.29692 -15.17990 -14.75468 -14.44962 -14.32792 -14.19243 -14.13995 -13.91773 -13.65894 -13.59818 -13.24503 -12.99730 -12.78531 -12.71855 -12.49331 -12.31897 -12.15688 -12.13629 -11.99549 -11.82645 -11.73763 -11.68495 -11.43130 -11.20238 -10.85626 -10.71156 -10.52621 -10.45641 -10.30036 -10.08672 -9.40963 -8.79126 -8.21216 -5.95332 0.56131 0.71496 1.53758 1.59235 1.76296 2.66276 3.06800 3.35266 3.66391 3.78215 3.82474 3.88845 3.95509 4.09363 4.12331 4.19396 4.34463 4.34948 4.41411 4.43013 4.47411 4.53715 4.58805 4.63912 4.65469 4.71732 4.79146 4.83183 4.84323 4.85277 4.91445 4.99542 5.00727 5.08583 5.10384 5.12393 5.15415 5.23032 5.27105 5.33709 5.40779 5.42527 5.47102 5.54123 5.61077 5.70048 5.70902 5.79334 6.08026 6.12398 6.31215 6.65353 6.73549 6.98798 7.35325 7.80398 9.13220 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.017319 B = 0.004070 C = 0.003894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.375201 B = 6877.697695 C = 7188.842493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 C -0.079 4.079 4 H 0.069 0.931 5 C -0.107 4.107 6 C -0.114 4.114 7 C -0.092 4.092 8 C -0.065 4.065 9 H 0.065 0.935 10 C 0.061 3.939 11 N -0.518 5.518 12 C 0.186 3.814 13 C -0.591 4.591 14 H 0.038 0.962 15 C 0.024 3.976 16 N -0.907 5.907 17 Si 1.062 2.938 18 H -0.296 1.296 19 H -0.297 1.297 20 H -0.254 1.254 21 C 0.111 3.889 22 C -0.089 4.089 23 C -0.072 4.072 24 C -0.185 4.185 25 C 0.076 3.924 26 N -0.520 5.520 27 C 0.141 3.859 28 C -0.103 4.103 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.052 0.948 35 H 0.073 0.927 36 H 0.051 0.949 37 H 0.060 0.940 38 H 0.031 0.969 39 H 0.049 0.951 40 H 0.026 0.974 41 H 0.044 0.956 42 H -0.012 1.012 43 H -0.007 1.007 44 H 0.273 0.727 45 H 0.027 0.973 46 H 0.083 0.917 47 H 0.129 0.871 48 H 0.149 0.851 49 H 0.163 0.837 50 H 0.127 0.873 51 H 0.065 0.935 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.507 -6.262 -6.735 15.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.154 4.154 3 C -0.097 4.097 4 H 0.088 0.912 5 C -0.144 4.144 6 C -0.151 4.151 7 C -0.130 4.130 8 C -0.084 4.084 9 H 0.084 0.916 10 C -0.067 4.067 11 N -0.243 5.243 12 C 0.061 3.939 13 C -0.630 4.630 14 H 0.056 0.944 15 C -0.182 4.182 16 N -0.542 5.542 17 Si 0.889 3.111 18 H -0.223 1.223 19 H -0.224 1.224 20 H -0.179 1.179 21 C -0.017 4.017 22 C -0.091 4.091 23 C -0.099 4.099 24 C -0.204 4.204 25 C -0.080 4.080 26 N -0.230 5.230 27 C -0.016 4.016 28 C -0.141 4.141 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.092 0.908 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.050 0.950 39 H 0.068 0.932 40 H 0.044 0.956 41 H 0.062 0.938 42 H 0.006 0.994 43 H 0.011 0.989 44 H 0.085 0.915 45 H 0.045 0.955 46 H 0.102 0.898 47 H 0.147 0.853 48 H 0.167 0.833 49 H 0.180 0.820 50 H 0.144 0.856 51 H 0.084 0.916 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.300 -4.519 -5.563 14.236 hybrid contribution 0.717 -1.918 -0.836 2.212 sum -11.583 -6.438 -6.399 14.716 Atomic orbital electron populations 1.21807 0.95226 1.01839 1.01998 1.21539 0.96415 0.95545 1.01903 1.21105 0.94401 0.96358 0.97846 0.91215 1.21586 1.00683 0.94765 0.97407 1.21504 0.95194 0.97386 1.01059 1.21257 0.95188 1.00458 0.96098 1.21002 0.93228 0.96281 0.97852 0.91634 1.22145 0.96238 0.89653 0.98658 1.62397 1.16987 1.17497 1.27388 1.19677 0.84684 0.96583 0.92963 1.21873 1.28628 1.00591 1.11864 0.94425 1.25897 0.93113 1.06149 0.93071 1.70662 1.34496 1.09272 1.39816 0.83746 0.75277 0.75339 0.76739 1.22263 1.22429 1.17867 1.20826 1.00300 0.90570 0.89988 1.20434 0.94564 0.96337 0.97813 1.21352 0.99447 0.93174 0.95906 1.22157 0.98902 0.96727 1.02652 1.22794 0.89826 0.99481 0.95915 1.67518 1.35324 1.03120 1.17026 1.22071 0.94135 0.91472 0.93948 1.21569 0.95824 0.95192 1.01474 0.92518 0.92623 0.92276 0.91755 0.92373 0.92920 0.90835 0.93067 0.92109 0.95027 0.93233 0.95634 0.93754 0.99435 0.98853 0.91534 0.95459 0.89839 0.85306 0.83331 0.81984 0.85597 0.91635 0.92906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 9.67 71.98 0.70 -1.53 16 2 C -0.12 -2.00 5.40 30.60 0.17 -1.83 16 3 C -0.08 -1.62 2.19 -10.80 -0.02 -1.64 16 4 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 5 C -0.11 -2.38 4.96 30.59 0.15 -2.23 16 6 C -0.11 -3.11 5.92 30.59 0.18 -2.93 16 7 C -0.09 -3.16 5.09 30.59 0.16 -3.00 16 8 C -0.06 -1.95 2.21 -10.81 -0.02 -1.97 16 9 H 0.07 1.94 6.45 -2.39 -0.02 1.92 16 10 C 0.06 2.18 4.35 86.30 0.38 2.56 16 11 N -0.52 -21.50 2.88 -905.37 -2.60 -24.10 16 12 C 0.19 9.01 4.31 85.55 0.37 9.38 16 13 C -0.59 -31.27 5.94 25.60 0.15 -31.12 16 14 H 0.04 2.08 6.19 -2.91 -0.02 2.06 16 15 C 0.02 1.30 5.37 84.65 0.45 1.75 16 16 N -0.91 -52.05 13.43 21.45 0.29 -51.76 16 17 Si 1.06 51.29 29.91 68.60 2.05 53.34 16 18 H -0.30 -14.60 7.11 99.48 0.71 -13.90 16 19 H -0.30 -14.31 7.11 99.48 0.71 -13.61 16 20 H -0.25 -11.38 5.65 99.48 0.56 -10.82 16 21 C 0.11 4.09 4.96 85.56 0.42 4.52 16 22 C -0.09 -3.50 4.14 -19.77 -0.08 -3.58 16 23 C -0.07 -2.66 9.86 22.47 0.22 -2.44 16 24 C -0.18 -6.28 10.11 22.36 0.23 -6.06 16 25 C 0.08 2.72 9.79 84.68 0.83 3.55 16 26 N -0.52 -21.36 10.36 -195.85 -2.03 -23.39 16 27 C 0.14 5.86 7.11 84.67 0.60 6.46 16 28 C -0.10 -2.49 4.48 30.58 0.14 -2.35 16 29 H 0.06 0.84 6.56 -2.39 -0.02 0.82 16 30 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 34 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.07 1.40 6.56 -2.39 -0.02 1.38 16 36 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.06 1.57 8.14 -2.38 -0.02 1.56 16 38 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.05 2.11 7.76 -2.39 -0.02 2.10 16 40 H 0.03 0.85 8.05 -2.39 -0.02 0.83 16 41 H 0.04 1.75 7.65 -2.38 -0.02 1.73 16 42 H -0.01 -0.59 7.79 -2.38 -0.02 -0.61 16 43 H -0.01 -0.35 7.23 -2.39 -0.02 -0.37 16 44 H 0.27 15.70 6.68 -92.71 -0.62 15.08 16 45 H 0.03 0.97 7.88 -2.39 -0.02 0.96 16 46 H 0.08 2.72 6.29 -2.39 -0.02 2.70 16 47 H 0.13 4.36 8.06 -2.91 -0.02 4.34 16 48 H 0.15 4.03 8.06 -2.91 -0.02 4.01 16 49 H 0.16 4.81 8.06 -2.91 -0.02 4.78 16 50 H 0.13 5.30 7.84 -2.91 -0.02 5.28 16 51 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 52 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 Total: -1.00 -60.20 388.96 3.58 -56.62 By element: Atomic # 1 Polarization: 20.89 SS G_CDS: 0.86 Total: 21.75 kcal Atomic # 6 Polarization: -37.48 SS G_CDS: 5.01 Total: -32.47 kcal Atomic # 7 Polarization: -94.91 SS G_CDS: -4.35 Total: -99.25 kcal Atomic # 14 Polarization: 51.29 SS G_CDS: 2.05 Total: 53.34 kcal Total: -60.20 3.58 -56.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182944953.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.558 kcal (2) G-P(sol) polarization free energy of solvation -60.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds