Wall clock time and date at job start Tue Mar 31 2020 11:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46963 * 2 1 4 4 H 1.09009 * 109.47206 * 55.00443 * 3 2 1 5 5 C 1.52997 * 109.47453 * 295.00363 * 3 2 1 6 6 C 1.52999 * 109.46844 * 299.99888 * 5 3 2 7 7 C 1.53004 * 109.47046 * 299.99983 * 6 5 3 8 8 C 1.52997 * 109.47285 * 60.00288 * 7 6 5 9 9 H 1.08996 * 109.47244 * 59.99232 * 8 7 6 10 10 C 1.52995 * 109.47196 * 179.97438 * 8 7 6 11 11 N 1.46900 * 109.47246 * 296.84487 * 10 8 7 12 12 C 1.46891 * 111.00095 * 288.06291 * 11 10 8 13 13 C 1.50704 * 109.47467 * 299.13264 * 12 11 10 14 14 H 1.08000 * 119.99296 * 4.96700 * 13 12 11 15 15 C 1.37877 * 120.00275 * 184.97168 * 13 12 11 16 16 N 1.31510 * 119.99933 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99927 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47233 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47170 * 120.00154 * 17 15 13 20 20 H 1.48502 * 109.46996 * 240.00283 * 17 15 13 21 21 C 1.46903 * 110.99884 * 164.10801 * 11 10 8 22 22 C 1.50700 * 109.47181 * 190.00153 * 21 11 10 23 23 C 1.38222 * 119.61922 * 94.99934 * 22 21 11 24 24 C 1.38632 * 119.15863 * 180.27754 * 23 22 21 25 25 C 1.38666 * 118.42051 * 359.48691 * 24 23 22 26 26 C 1.38181 * 119.16663 * 0.51493 * 25 24 23 27 27 N 1.31859 * 119.61668 * 275.02901 * 22 21 11 28 28 C 1.52999 * 109.46844 * 299.99836 * 8 7 6 29 29 H 1.09008 * 109.47188 * 299.99989 * 1 2 3 30 30 H 1.09004 * 109.47215 * 59.99825 * 1 2 3 31 31 H 1.08996 * 109.47167 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47064 * 240.00455 * 2 1 3 33 33 H 1.08997 * 109.47310 * 119.99818 * 2 1 3 34 34 H 1.09005 * 109.47235 * 179.97438 * 5 3 2 35 35 H 1.09000 * 109.47453 * 59.99686 * 5 3 2 36 36 H 1.09000 * 109.47007 * 180.02562 * 6 5 3 37 37 H 1.08996 * 109.47231 * 60.00270 * 6 5 3 38 38 H 1.08999 * 109.46991 * 299.99343 * 7 6 5 39 39 H 1.09009 * 109.46708 * 179.97438 * 7 6 5 40 40 H 1.08999 * 109.46963 * 176.84095 * 10 8 7 41 41 H 1.08999 * 109.46921 * 56.84863 * 10 8 7 42 42 H 1.09009 * 109.47418 * 59.12852 * 12 11 10 43 43 H 1.09001 * 109.47428 * 179.12727 * 12 11 10 44 44 H 0.97001 * 120.00164 * 179.97438 * 16 15 13 45 45 H 1.08999 * 109.46981 * 69.99932 * 21 11 10 46 46 H 1.09003 * 109.47153 * 310.00355 * 21 11 10 47 47 H 1.07995 * 120.41529 * 0.02562 * 23 22 21 48 48 H 1.07996 * 120.78456 * 179.72226 * 24 23 22 49 49 H 1.08005 * 120.41629 * 180.26519 * 25 24 23 50 50 H 1.07999 * 119.62126 * 179.72626 * 26 25 24 51 51 H 1.08997 * 109.47725 * 179.97438 * 28 8 7 52 52 H 1.09005 * 109.47200 * 300.00016 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8419 5 6 1.6351 2.1266 -1.3073 6 6 2.2452 1.3701 -2.4889 7 6 3.7701 1.3719 -2.3632 8 6 4.1749 0.6878 -1.0559 9 1 3.8115 -0.3398 -1.0559 10 6 5.6997 0.6891 -0.9305 11 7 6.2816 -0.1014 -2.0234 12 6 6.0401 -1.5362 -1.8218 13 6 6.6846 -1.9780 -0.5332 14 1 7.1507 -1.2503 0.1146 15 6 6.6794 -3.3111 -0.1814 16 7 6.1115 -4.1971 -0.9700 17 14 7.4790 -3.8587 1.4156 18 1 8.0424 -2.6776 2.1175 19 1 6.4623 -4.5094 2.2805 20 1 8.5674 -4.8243 1.1185 21 6 7.7171 0.1758 -2.1672 22 6 8.2258 -0.4553 -3.4376 23 6 8.2985 0.2990 -4.5936 24 6 8.7624 -0.2928 -5.7582 25 6 9.1478 -1.6241 -5.7138 26 6 9.0472 -2.3149 -4.5213 27 7 8.5959 -1.7209 -3.4337 28 6 3.5648 1.4444 0.1257 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.9981 3.1545 -1.3070 35 1 0.5488 2.1253 -1.3969 36 1 1.9572 1.8577 -3.4202 37 1 1.8819 0.3424 -2.4890 38 1 4.1334 2.3996 -2.3633 39 1 4.2046 0.8325 -3.2049 40 1 5.9859 0.2523 0.0262 41 1 6.0680 1.7135 -0.9869 42 1 4.9669 -1.7208 -1.7731 43 1 6.4678 -2.0970 -2.6530 44 1 6.1082 -5.1350 -0.7227 45 1 8.2544 -0.2395 -1.3146 46 1 7.8768 1.2533 -2.2075 47 1 7.9938 1.3350 -4.5904 48 1 8.8258 0.2707 -6.6773 49 1 9.5182 -2.1161 -6.6011 50 1 9.3411 -3.3533 -4.4794 51 1 3.8527 0.9568 1.0571 52 1 3.9281 2.4721 0.1258 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183048214.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:33 Heat of formation + Delta-G solvation = 12.128391 kcal Electronic energy + Delta-G solvation = -27845.838048 eV Core-core repulsion = 24422.996011 eV Total energy + Delta-G solvation = -3422.842037 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.71742 -39.17085 -36.54078 -33.19124 -32.37323 -31.92237 -31.45613 -30.39240 -29.01038 -27.04464 -25.85384 -24.14213 -23.15571 -22.90386 -22.20474 -21.85242 -20.65658 -19.32721 -18.00857 -16.57075 -16.13688 -15.65443 -15.44267 -14.97119 -14.86448 -14.65132 -14.58880 -13.88206 -13.83129 -13.59185 -13.12057 -12.89118 -12.79545 -12.72579 -12.43591 -12.21568 -11.97874 -11.80508 -11.55538 -11.36078 -11.12770 -11.06872 -10.92734 -10.81141 -10.76618 -10.66311 -10.42766 -10.23267 -10.20687 -9.92419 -9.57115 -9.51656 -9.47844 -9.39491 -9.28918 -8.65443 -8.49901 -8.22609 -7.06703 -5.85864 -3.90354 1.61544 1.79931 3.35227 3.43185 3.45671 4.29538 4.54118 4.87134 4.94263 4.98550 5.09065 5.14346 5.25516 5.35290 5.40918 5.46803 5.48626 5.51347 5.56744 5.61459 5.64376 5.78720 5.86644 5.88787 5.94208 5.99422 6.01886 6.05387 6.11388 6.15605 6.18203 6.20938 6.23834 6.37025 6.40695 6.43952 6.48310 6.57872 6.58560 6.59376 6.70403 6.72100 6.78653 6.90797 7.00686 7.10925 7.20474 7.41528 7.73137 8.07240 8.15560 8.39920 8.45030 8.72018 9.15970 9.73317 11.20451 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.009762 B = 0.004970 C = 0.003670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2867.690165 B = 5632.753992 C = 7628.178172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C -0.083 4.083 4 H 0.060 0.940 5 C -0.112 4.112 6 C -0.122 4.122 7 C -0.100 4.100 8 C -0.077 4.077 9 H 0.080 0.920 10 C 0.065 3.935 11 N -0.533 5.533 12 C 0.186 3.814 13 C -0.528 4.528 14 H 0.052 0.948 15 C 0.070 3.930 16 N -0.889 5.889 17 Si 0.880 3.120 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.285 1.285 21 C 0.104 3.896 22 C 0.158 3.842 23 C -0.166 4.166 24 C -0.086 4.086 25 C -0.191 4.191 26 C 0.100 3.900 27 N -0.443 5.443 28 C -0.108 4.108 29 H 0.047 0.953 30 H 0.053 0.947 31 H 0.049 0.951 32 H 0.074 0.926 33 H 0.060 0.940 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.051 0.949 37 H 0.063 0.937 38 H 0.048 0.952 39 H 0.072 0.928 40 H 0.048 0.952 41 H 0.046 0.954 42 H 0.023 0.977 43 H 0.047 0.953 44 H 0.257 0.743 45 H 0.062 0.938 46 H 0.064 0.936 47 H 0.127 0.873 48 H 0.124 0.876 49 H 0.124 0.876 50 H 0.148 0.852 51 H 0.059 0.941 52 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.406 11.663 -5.208 13.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C -0.101 4.101 4 H 0.078 0.922 5 C -0.149 4.149 6 C -0.160 4.160 7 C -0.138 4.138 8 C -0.096 4.096 9 H 0.099 0.901 10 C -0.064 4.064 11 N -0.257 5.257 12 C 0.060 3.940 13 C -0.567 4.567 14 H 0.070 0.930 15 C -0.132 4.132 16 N -0.529 5.529 17 Si 0.709 3.291 18 H -0.201 1.201 19 H -0.214 1.214 20 H -0.212 1.212 21 C -0.024 4.024 22 C 0.019 3.981 23 C -0.187 4.187 24 C -0.112 4.112 25 C -0.211 4.211 26 C -0.058 4.058 27 N -0.151 5.151 28 C -0.146 4.146 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.092 0.908 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.066 0.934 39 H 0.091 0.909 40 H 0.066 0.934 41 H 0.064 0.936 42 H 0.041 0.959 43 H 0.065 0.935 44 H 0.067 0.933 45 H 0.080 0.920 46 H 0.082 0.918 47 H 0.145 0.855 48 H 0.142 0.858 49 H 0.142 0.858 50 H 0.165 0.835 51 H 0.078 0.922 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.737 11.143 -4.875 12.724 hybrid contribution 0.922 -0.363 0.815 1.283 sum -2.815 10.780 -4.060 11.858 Atomic orbital electron populations 1.21815 0.96682 1.01154 1.01179 1.21678 0.94976 0.96643 1.02964 1.21092 0.95890 0.96034 0.97096 0.92160 1.21564 0.99521 0.98785 0.95052 1.21607 0.96923 1.00497 0.96940 1.21423 0.93829 0.99761 0.98782 1.21077 0.94772 1.00222 0.93515 0.90129 1.21972 0.93939 0.95814 0.94635 1.62570 1.09751 1.10947 1.42453 1.19832 0.96274 0.81214 0.96644 1.21561 1.36434 0.92671 1.06027 0.93015 1.24815 0.95264 0.96789 0.96296 1.69949 1.44570 1.01655 1.36692 0.86734 0.79264 0.78654 0.84427 1.20118 1.21358 1.21176 1.20819 0.91379 0.96818 0.93409 1.21273 0.92410 0.89379 0.94997 1.21904 1.01905 1.01379 0.93498 1.21417 0.96813 0.94974 0.98008 1.22032 1.03793 0.95666 0.99592 1.22800 0.94808 0.99953 0.88269 1.67799 1.07616 1.10088 1.29632 1.21577 0.94198 0.99926 0.98858 0.93381 0.92814 0.93147 0.90777 0.92095 0.92663 0.92635 0.93063 0.91839 0.93367 0.90904 0.93407 0.93569 0.95908 0.93522 0.93329 0.92016 0.91776 0.85503 0.85786 0.85769 0.83504 0.92211 0.92748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.67 37.16 0.36 -1.40 16 2 C -0.13 -1.71 4.70 -26.73 -0.13 -1.84 16 3 C -0.08 -1.05 2.66 -90.62 -0.24 -1.30 16 4 H 0.06 0.72 8.14 -51.92 -0.42 0.29 16 5 C -0.11 -1.33 5.21 -26.73 -0.14 -1.47 16 6 C -0.12 -1.61 5.65 -26.73 -0.15 -1.77 16 7 C -0.10 -1.51 5.08 -26.73 -0.14 -1.64 16 8 C -0.08 -1.28 1.91 -90.62 -0.17 -1.45 16 9 H 0.08 1.59 5.03 -51.93 -0.26 1.33 16 10 C 0.06 1.20 4.21 -3.83 -0.02 1.18 16 11 N -0.53 -10.95 4.03 -237.52 -0.96 -11.91 16 12 C 0.19 4.70 4.71 -4.98 -0.02 4.67 16 13 C -0.53 -14.34 7.34 -34.44 -0.25 -14.59 16 14 H 0.05 1.41 5.95 -52.49 -0.31 1.10 16 15 C 0.07 1.99 5.46 -17.82 -0.10 1.89 16 16 N -0.89 -26.39 13.29 55.43 0.74 -25.66 16 17 Si 0.88 21.96 29.54 -169.99 -5.02 16.94 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 20 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 21 C 0.10 2.03 5.09 -4.97 -0.03 2.00 16 22 C 0.16 3.03 5.70 -82.59 -0.47 2.56 16 23 C -0.17 -2.61 9.72 -39.44 -0.38 -3.00 16 24 C -0.09 -1.19 10.18 -39.28 -0.40 -1.59 16 25 C -0.19 -2.75 10.11 -39.44 -0.40 -3.14 16 26 C 0.10 1.76 11.18 -17.55 -0.20 1.56 16 27 N -0.44 -9.39 8.77 -9.47 -0.08 -9.48 16 28 C -0.11 -1.54 4.73 -26.73 -0.13 -1.67 16 29 H 0.05 0.51 8.14 -51.92 -0.42 0.09 16 30 H 0.05 0.59 6.57 -51.93 -0.34 0.24 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.07 1.14 4.83 -51.93 -0.25 0.89 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.05 0.61 6.56 -51.93 -0.34 0.27 16 36 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.90 6.32 -51.93 -0.33 0.57 16 38 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.07 1.24 7.69 -51.92 -0.40 0.84 16 40 H 0.05 1.00 6.14 -51.93 -0.32 0.68 16 41 H 0.05 0.76 7.81 -51.93 -0.41 0.35 16 42 H 0.02 0.63 6.61 -51.92 -0.34 0.28 16 43 H 0.05 1.31 6.17 -51.93 -0.32 0.99 16 44 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 45 H 0.06 1.36 6.60 -51.93 -0.34 1.02 16 46 H 0.06 1.05 7.76 -51.93 -0.40 0.64 16 47 H 0.13 1.70 8.06 -52.49 -0.42 1.27 16 48 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 49 H 0.12 1.39 8.06 -52.48 -0.42 0.97 16 50 H 0.15 2.34 8.06 -52.49 -0.42 1.91 16 51 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 52 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 388.12 15.07 5.85 5.85 Total: -1.00 -29.99 388.12 -11.47 -41.47 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -9.00 Total: 3.79 kcal Atomic # 6 Polarization: -18.00 SS G_CDS: -3.00 Total: -21.00 kcal Atomic # 7 Polarization: -46.74 SS G_CDS: -0.30 Total: -47.04 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -29.99 -11.47 -41.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183048214.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.593 kcal (2) G-P(sol) polarization free energy of solvation -29.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds