Wall clock time and date at job start Tue Mar 31 2020 11:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46963 * 2 1 4 4 H 1.09009 * 109.47206 * 55.00443 * 3 2 1 5 5 C 1.52997 * 109.47453 * 295.00363 * 3 2 1 6 6 C 1.52999 * 109.46844 * 299.99888 * 5 3 2 7 7 C 1.53004 * 109.47046 * 299.99983 * 6 5 3 8 8 C 1.52997 * 109.47285 * 60.00288 * 7 6 5 9 9 H 1.08996 * 109.47244 * 59.99232 * 8 7 6 10 10 C 1.52995 * 109.47196 * 179.97438 * 8 7 6 11 11 N 1.46900 * 109.47246 * 296.84487 * 10 8 7 12 12 C 1.46891 * 111.00095 * 288.06291 * 11 10 8 13 13 C 1.50704 * 109.47467 * 299.13264 * 12 11 10 14 14 H 1.08000 * 119.99296 * 4.96700 * 13 12 11 15 15 C 1.37877 * 120.00275 * 184.97168 * 13 12 11 16 16 N 1.31510 * 119.99933 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99927 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47233 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47170 * 120.00154 * 17 15 13 20 20 H 1.48502 * 109.46996 * 240.00283 * 17 15 13 21 21 C 1.46903 * 110.99884 * 164.10801 * 11 10 8 22 22 C 1.50700 * 109.47181 * 190.00153 * 21 11 10 23 23 C 1.38222 * 119.61922 * 94.99934 * 22 21 11 24 24 C 1.38632 * 119.15863 * 180.27754 * 23 22 21 25 25 C 1.38666 * 118.42051 * 359.48691 * 24 23 22 26 26 C 1.38181 * 119.16663 * 0.51493 * 25 24 23 27 27 N 1.31859 * 119.61668 * 275.02901 * 22 21 11 28 28 C 1.52999 * 109.46844 * 299.99836 * 8 7 6 29 29 H 1.09008 * 109.47188 * 299.99989 * 1 2 3 30 30 H 1.09004 * 109.47215 * 59.99825 * 1 2 3 31 31 H 1.08996 * 109.47167 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47064 * 240.00455 * 2 1 3 33 33 H 1.08997 * 109.47310 * 119.99818 * 2 1 3 34 34 H 1.09005 * 109.47235 * 179.97438 * 5 3 2 35 35 H 1.09000 * 109.47453 * 59.99686 * 5 3 2 36 36 H 1.09000 * 109.47007 * 180.02562 * 6 5 3 37 37 H 1.08996 * 109.47231 * 60.00270 * 6 5 3 38 38 H 1.08999 * 109.46991 * 299.99343 * 7 6 5 39 39 H 1.09009 * 109.46708 * 179.97438 * 7 6 5 40 40 H 1.08999 * 109.46963 * 176.84095 * 10 8 7 41 41 H 1.08999 * 109.46921 * 56.84863 * 10 8 7 42 42 H 1.09009 * 109.47418 * 59.12852 * 12 11 10 43 43 H 1.09001 * 109.47428 * 179.12727 * 12 11 10 44 44 H 0.97001 * 120.00164 * 179.97438 * 16 15 13 45 45 H 1.08999 * 109.46981 * 69.99932 * 21 11 10 46 46 H 1.09003 * 109.47153 * 310.00355 * 21 11 10 47 47 H 1.07995 * 120.41529 * 0.02562 * 23 22 21 48 48 H 1.07996 * 120.78456 * 179.72226 * 24 23 22 49 49 H 1.08005 * 120.41629 * 180.26519 * 25 24 23 50 50 H 1.07999 * 119.62126 * 179.72626 * 26 25 24 51 51 H 1.08997 * 109.47725 * 179.97438 * 28 8 7 52 52 H 1.09005 * 109.47200 * 300.00016 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8419 5 6 1.6351 2.1266 -1.3073 6 6 2.2452 1.3701 -2.4889 7 6 3.7701 1.3719 -2.3632 8 6 4.1749 0.6878 -1.0559 9 1 3.8115 -0.3398 -1.0559 10 6 5.6997 0.6891 -0.9305 11 7 6.2816 -0.1014 -2.0234 12 6 6.0401 -1.5362 -1.8218 13 6 6.6846 -1.9780 -0.5332 14 1 7.1507 -1.2503 0.1146 15 6 6.6794 -3.3111 -0.1814 16 7 6.1115 -4.1971 -0.9700 17 14 7.4790 -3.8587 1.4156 18 1 8.0424 -2.6776 2.1175 19 1 6.4623 -4.5094 2.2805 20 1 8.5674 -4.8243 1.1185 21 6 7.7171 0.1758 -2.1672 22 6 8.2258 -0.4553 -3.4376 23 6 8.2985 0.2990 -4.5936 24 6 8.7624 -0.2928 -5.7582 25 6 9.1478 -1.6241 -5.7138 26 6 9.0472 -2.3149 -4.5213 27 7 8.5959 -1.7209 -3.4337 28 6 3.5648 1.4444 0.1257 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.9981 3.1545 -1.3070 35 1 0.5488 2.1253 -1.3969 36 1 1.9572 1.8577 -3.4202 37 1 1.8819 0.3424 -2.4890 38 1 4.1334 2.3996 -2.3633 39 1 4.2046 0.8325 -3.2049 40 1 5.9859 0.2523 0.0262 41 1 6.0680 1.7135 -0.9869 42 1 4.9669 -1.7208 -1.7731 43 1 6.4678 -2.0970 -2.6530 44 1 6.1082 -5.1350 -0.7227 45 1 8.2544 -0.2395 -1.3146 46 1 7.8768 1.2533 -2.2075 47 1 7.9938 1.3350 -4.5904 48 1 8.8258 0.2707 -6.6773 49 1 9.5182 -2.1161 -6.6011 50 1 9.3411 -3.3533 -4.4794 51 1 3.8527 0.9568 1.0571 52 1 3.9281 2.4721 0.1258 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183048214.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:32 Heat of formation + Delta-G solvation = -3.629585 kcal Electronic energy + Delta-G solvation = -27846.521365 eV Core-core repulsion = 24422.996011 eV Total energy + Delta-G solvation = -3423.525354 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.05114 -40.37018 -38.12265 -34.67164 -34.22917 -33.18149 -32.71806 -31.71055 -30.14606 -28.97814 -27.24642 -25.89293 -24.40955 -24.18420 -23.59878 -23.00990 -22.00057 -20.97825 -19.13961 -18.51769 -17.51832 -17.01990 -16.84254 -16.50821 -16.38293 -16.07728 -15.74735 -15.54649 -15.17929 -14.86557 -14.56904 -14.17009 -14.13212 -13.98386 -13.90336 -13.60502 -13.16470 -13.08690 -12.89037 -12.83406 -12.67272 -12.65121 -12.45893 -12.31283 -12.25864 -12.14515 -11.91070 -11.77413 -11.68328 -11.50373 -11.34540 -10.81957 -10.69189 -10.64538 -10.62329 -10.45624 -9.99080 -9.79196 -8.89069 -8.04255 -6.17567 0.34162 0.59302 1.31981 1.33713 1.43476 2.40960 2.94688 3.22649 3.51951 3.73107 3.85939 3.94690 3.98772 3.99489 4.13415 4.26133 4.33608 4.40450 4.42328 4.45662 4.48261 4.60444 4.67483 4.71967 4.74418 4.80040 4.83452 4.87735 4.91453 4.95151 4.99741 5.03846 5.07428 5.13331 5.19220 5.25341 5.28985 5.35171 5.36410 5.39795 5.41092 5.45249 5.49787 5.53150 5.60664 5.62995 5.76863 5.80286 5.90340 5.99593 6.18318 6.33834 6.64115 7.00023 7.40568 7.49487 8.98972 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.009762 B = 0.004970 C = 0.003670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2867.690165 B = 5632.753992 C = 7628.178172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.126 4.126 3 C -0.079 4.079 4 H 0.080 0.920 5 C -0.105 4.105 6 C -0.120 4.120 7 C -0.092 4.092 8 C -0.071 4.071 9 H 0.038 0.962 10 C 0.065 3.935 11 N -0.524 5.524 12 C 0.211 3.789 13 C -0.524 4.524 14 H 0.046 0.954 15 C 0.016 3.984 16 N -0.925 5.925 17 Si 0.942 3.058 18 H -0.270 1.270 19 H -0.281 1.281 20 H -0.284 1.284 21 C 0.107 3.893 22 C 0.124 3.876 23 C -0.161 4.161 24 C -0.079 4.079 25 C -0.175 4.175 26 C 0.069 3.931 27 N -0.501 5.501 28 C -0.104 4.104 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.045 0.955 32 H 0.047 0.953 33 H 0.040 0.960 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.044 0.956 38 H 0.067 0.933 39 H 0.047 0.953 40 H 0.016 0.984 41 H 0.077 0.923 42 H -0.010 1.010 43 H 0.018 0.982 44 H 0.257 0.743 45 H 0.025 0.975 46 H 0.100 0.900 47 H 0.155 0.845 48 H 0.170 0.830 49 H 0.163 0.837 50 H 0.148 0.852 51 H 0.043 0.957 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.680 14.836 -6.382 16.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.164 4.164 3 C -0.097 4.097 4 H 0.098 0.902 5 C -0.142 4.142 6 C -0.157 4.157 7 C -0.130 4.130 8 C -0.090 4.090 9 H 0.056 0.944 10 C -0.063 4.063 11 N -0.247 5.247 12 C 0.084 3.916 13 C -0.563 4.563 14 H 0.065 0.935 15 C -0.182 4.182 16 N -0.566 5.566 17 Si 0.768 3.232 18 H -0.195 1.195 19 H -0.207 1.207 20 H -0.210 1.210 21 C -0.022 4.022 22 C -0.014 4.014 23 C -0.181 4.181 24 C -0.104 4.104 25 C -0.195 4.195 26 C -0.088 4.088 27 N -0.211 5.211 28 C -0.142 4.142 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.063 0.937 38 H 0.086 0.914 39 H 0.066 0.934 40 H 0.034 0.966 41 H 0.095 0.905 42 H 0.008 0.992 43 H 0.036 0.964 44 H 0.066 0.934 45 H 0.043 0.957 46 H 0.118 0.882 47 H 0.172 0.828 48 H 0.188 0.812 49 H 0.180 0.820 50 H 0.165 0.835 51 H 0.061 0.939 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.007 14.333 -6.043 16.063 hybrid contribution 1.064 -1.346 1.097 2.036 sum -2.943 12.987 -4.946 14.206 Atomic orbital electron populations 1.21770 0.94669 1.01378 1.02436 1.21648 0.96756 0.97248 1.00740 1.21090 0.94475 0.95400 0.98731 0.90197 1.21535 1.00484 0.99010 0.93190 1.21575 0.95419 1.00025 0.98715 1.21316 0.95291 0.99946 0.96397 1.20970 0.93403 0.98617 0.95999 0.94396 1.22068 0.95336 0.96551 0.92310 1.62494 1.11135 1.08150 1.42962 1.19298 0.93495 0.84058 0.94710 1.21768 1.35484 0.92610 1.06433 0.93548 1.25576 0.96063 0.97088 0.99461 1.70075 1.46128 1.01852 1.38501 0.85763 0.78378 0.78244 0.80794 1.19463 1.20651 1.21005 1.20881 0.89626 0.98752 0.92896 1.21302 0.94452 0.89525 0.96131 1.22171 1.00843 1.02326 0.92773 1.21947 0.94736 0.94817 0.98926 1.22395 1.01796 0.95994 0.99293 1.23024 0.96025 1.00560 0.89177 1.67610 1.09582 1.11741 1.32141 1.21547 0.95562 1.00300 0.96745 0.91862 0.91653 0.93580 0.93411 0.94097 0.90942 0.90956 0.91296 0.93730 0.91389 0.93436 0.96564 0.90487 0.99201 0.96419 0.93370 0.95686 0.88151 0.82751 0.81227 0.81988 0.83458 0.93865 0.90604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.23 9.67 71.98 0.70 -2.53 16 2 C -0.13 -3.54 4.70 30.59 0.14 -3.39 16 3 C -0.08 -1.89 2.66 -10.79 -0.03 -1.92 16 4 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 5 C -0.10 -2.19 5.21 30.59 0.16 -2.03 16 6 C -0.12 -3.01 5.65 30.60 0.17 -2.84 16 7 C -0.09 -2.69 5.08 30.59 0.16 -2.54 16 8 C -0.07 -2.43 1.91 -10.80 -0.02 -2.45 16 9 H 0.04 1.62 5.03 -2.39 -0.01 1.61 16 10 C 0.07 2.48 4.21 86.30 0.36 2.84 16 11 N -0.52 -22.44 4.03 -905.37 -3.65 -26.09 16 12 C 0.21 11.45 4.71 85.56 0.40 11.86 16 13 C -0.52 -30.20 7.34 25.60 0.19 -30.01 16 14 H 0.05 2.68 5.95 -2.91 -0.02 2.66 16 15 C 0.02 0.98 5.46 84.66 0.46 1.44 16 16 N -0.92 -57.84 13.29 21.45 0.28 -57.56 16 17 Si 0.94 46.92 29.54 68.60 2.03 48.95 16 18 H -0.27 -13.06 7.11 99.48 0.71 -12.35 16 19 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 20 H -0.28 -14.01 7.11 99.48 0.71 -13.31 16 21 C 0.11 4.25 5.09 85.56 0.44 4.69 16 22 C 0.12 4.82 5.70 42.55 0.24 5.06 16 23 C -0.16 -4.72 9.72 22.36 0.22 -4.51 16 24 C -0.08 -1.91 10.18 22.47 0.23 -1.68 16 25 C -0.17 -4.67 10.11 22.36 0.23 -4.44 16 26 C 0.07 2.51 11.18 84.67 0.95 3.45 16 27 N -0.50 -22.26 8.77 -183.89 -1.61 -23.88 16 28 C -0.10 -2.91 4.73 30.60 0.14 -2.77 16 29 H 0.06 1.21 8.14 -2.38 -0.02 1.20 16 30 H 0.06 1.30 6.57 -2.38 -0.02 1.28 16 31 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.05 1.58 4.83 -2.39 -0.01 1.57 16 33 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 35 H 0.07 1.32 6.56 -2.39 -0.02 1.30 16 36 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.04 1.29 6.32 -2.39 -0.02 1.27 16 38 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.05 1.62 7.69 -2.38 -0.02 1.61 16 40 H 0.02 0.71 6.14 -2.39 -0.01 0.70 16 41 H 0.08 2.44 7.81 -2.39 -0.02 2.42 16 42 H -0.01 -0.60 6.61 -2.38 -0.02 -0.62 16 43 H 0.02 1.07 6.17 -2.39 -0.01 1.06 16 44 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 45 H 0.02 1.16 6.60 -2.39 -0.02 1.15 16 46 H 0.10 3.16 7.76 -2.39 -0.02 3.14 16 47 H 0.15 3.57 8.06 -2.91 -0.02 3.55 16 48 H 0.17 2.61 8.06 -2.91 -0.02 2.59 16 49 H 0.16 3.03 8.06 -2.91 -0.02 3.00 16 50 H 0.15 4.97 8.06 -2.91 -0.02 4.94 16 51 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 52 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 Total: -1.00 -71.48 388.12 3.06 -68.42 By element: Atomic # 1 Polarization: 21.05 SS G_CDS: 0.88 Total: 21.93 kcal Atomic # 6 Polarization: -36.91 SS G_CDS: 5.14 Total: -31.78 kcal Atomic # 7 Polarization: -102.55 SS G_CDS: -4.98 Total: -107.52 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 2.03 Total: 48.95 kcal Total: -71.48 3.06 -68.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183048214.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.788 kcal (2) G-P(sol) polarization free energy of solvation -71.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds